Wnt5a (wingless-type MMTV integration site family, member 5A) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Wnt5a (wingless-type MMTV integration site family, member 5A) Mus musculus
Analyze
Symbol: Wnt5a
Name: wingless-type MMTV integration site family, member 5A
RGD ID: 734385
MGI Page MGI
Description: Enables frizzled binding activity; protein domain specific binding activity; and receptor ligand activity. Involved in several processes, including heart development; neuron differentiation; and positive regulation of macromolecule metabolic process. Acts upstream of or within several processes, including embryonic morphogenesis; morphogenesis of an epithelium; and reproductive structure development. Located in cell surface and extracellular matrix. Is active in Schaffer collateral - CA1 synapse and glutamatergic synapse. Is expressed in several structures, including alimentary system; embryo ectoderm; genitourinary system; limb; and sensory organ. Used to study Robinow syndrome. Human ortholog(s) of this gene implicated in autosomal dominant Robinow syndrome 1. Orthologous to human WNT5A (Wnt family member 5A).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 8030457G12Rik; wingless-related MMTV integration site 5A; Wnt-; Wnt-5a
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391428,224,962 - 28,249,405 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1428,226,707 - 28,249,405 (+)EnsemblGRCm39 Ensembl
GRCm381428,504,543 - 28,527,448 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1428,504,750 - 28,527,448 (+)EnsemblGRCm38mm10GRCm38
MGSCv371429,318,659 - 29,338,620 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361427,332,339 - 27,352,300 (+)NCBIMGSCv36mm8
Celera1424,754,276 - 24,774,180 (+)NCBICelera
Cytogenetic Map14A3NCBI
cM Map1416.8NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Wnt5aMousecolon cancer treatmentISOWnt5a (Rattus norvegicus)150530464 RGD 
Wnt5aMouseendometrial carcinoma  ISOWNT5A (Homo sapiens)2291875 RGD 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Wnt5aMouseautosomal dominant Robinow syndrome 1  ISOWNT5A (Homo sapiens)8554872ClinVar more ...ClinVarPMID:16602827 more ...
Wnt5aMouseDwarfism  ISOWNT5A (Homo sapiens)8554872ClinVar Annotator: match by term: Short statureClinVarPMID:25741868
Wnt5aMousegenetic disease  ISOWNT5A (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 more ...
Wnt5aMouseRobinow syndrome  ISOWNT5A (Homo sapiens)8554872ClinVar more ...ClinVarPMID:18414213 more ...
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Wnt5aMouseFemale Urogenital Diseases  ISOWNT5A (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16002989
Wnt5aMouseidiopathic pulmonary fibrosis  ISOWNT5A (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:28726637
Wnt5aMouseLung Neoplasms  ISOWNT5A (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:23349696
Wnt5aMouseNeoplastic Cell Transformation  ISOWNT5A (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:19061910
Wnt5aMouseRobinow syndrome  ISOWNT5A (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
Wnt5aMouseUterine Cervical Neoplasms  ISOWNT5A (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:25061499
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Wnt5aMouseRobinow syndrome  IAGP 13592920 MouseDO 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Wnt5aMouseautosomal dominant Robinow syndrome 1  ISOWNT5A (Homo sapiens)7240710 OMIM 

1 to 20 of 258 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Wnt5aMouse(-)-epigallocatechin 3-gallate increases expressionISOWNT5A (Homo sapiens)6480464epigallocatechin gallate results in increased expression of WNT5A mRNACTDPMID:22079256
Wnt5aMouse(-)-epigallocatechin 3-gallate multiple interactionsISOWNT5A (Homo sapiens)6480464[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of WNT5A mRNACTDPMID:22079256
Wnt5aMouse(-)-gambogic acid decreases expressionISOWNT5A (Homo sapiens)6480464gambogic acid results in decreased expression of WNT5A mRNA and gambogic acid results in decreased expression of WNT5A proteinCTDPMID:33533530
Wnt5aMouse(R)-lipoic acid multiple interactionsEXP 6480464Thioctic Acid inhibits the reaction [Sodium Fluoride results in increased expression of WNT5A protein]CTDPMID:37739047
Wnt5aMouse1,1-dichloroethene decreases expressionEXP 6480464vinylidene chloride results in decreased expression of WNT5A mRNACTDPMID:26682919
Wnt5aMouse1,2-dimethylhydrazine increases expressionEXP 64804641 and 2-Dimethylhydrazine results in increased expression of WNT5A mRNACTDPMID:22206623
Wnt5aMouse1,4-benzoquinone increases expressionISOWNT5A (Homo sapiens)6480464quinone results in increased expression of WNT5A mRNACTDPMID:22960397
Wnt5aMouse1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine increases expressionISOWnt5a (Rattus norvegicus)6480464chlorcyclizine results in increased expression of WNT5A mRNACTDPMID:21058326
Wnt5aMouse17alpha-ethynylestradiol affects expressionISOWnt5a (Rattus norvegicus)6480464Ethinyl Estradiol affects the expression of WNT5A mRNACTDPMID:16551644
Wnt5aMouse17beta-estradiol multiple interactionsISOWNT5A (Homo sapiens)6480464[Estradiol co-treated with Bucladesine co-treated with Medroxyprogesterone Acetate] results in increased expression of WNT5A mRNA more ...CTDPMID:19619570 more ...
Wnt5aMouse17beta-estradiol decreases expressionISOWNT5A (Homo sapiens)6480464Estradiol results in decreased expression of WNT5A mRNACTDPMID:31614463 and PMID:31646340
Wnt5aMouse17beta-estradiol increases expressionISOWnt5a (Rattus norvegicus)6480464Estradiol results in increased expression of WNT5A mRNACTDPMID:31119341
Wnt5aMouse17beta-estradiol multiple interactionsISOWnt5a (Rattus norvegicus)6480464[bisphenol A co-treated with Estradiol] results in increased expression of WNT5A mRNACTDPMID:26496021
Wnt5aMouse17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of WNT5A mRNACTDPMID:19484750
Wnt5aMouse17beta-estradiol increases expressionISOWNT5A (Homo sapiens)6480464Estradiol results in increased expression of WNT5A mRNACTDPMID:19619570
Wnt5aMouse2,2',4,4',5,5'-hexachlorobiphenyl decreases expressionISOWNT5A (Homo sapiens)64804642 more ...CTDPMID:22262711
Wnt5aMouse2,3,7,8-tetrachlorodibenzodioxine decreases secretionEXP 6480464Tetrachlorodibenzodioxin results in decreased secretion of WNT5A proteinCTDPMID:26572662
Wnt5aMouse2,3,7,8-tetrachlorodibenzodioxine increases expressionISOWnt5a (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in increased expression of WNT5A mRNACTDPMID:34747641
Wnt5aMouse2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of WNT5A mRNACTDPMID:24680724
Wnt5aMouse2,3,7,8-tetrachlorodibenzodioxine increases expressionISOWNT5A (Homo sapiens)6480464Tetrachlorodibenzodioxin results in increased expression of WNT5A mRNA and Tetrachlorodibenzodioxin results in increased expression of WNT5A proteinCTDPMID:19619570 more ...

1 to 20 of 258 rows

Biological Process
1 to 20 of 278 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Wnt5aMouseactivation of GTPase activity involved_inIDA 2290270 PMID:18953410ParkinsonsUK-UCLPMID:18953410
Wnt5aMouseactivation of protein kinase B activity acts_upstream_ofISOUniProtKB:P412212290270 GO_CentralGO_REF:0000119
Wnt5aMouseanimal organ morphogenesis acts_upstream_of_or_withinTAS 2290270 PMID:9889131MGIPMID:9889131
Wnt5aMouseanterior/posterior axis specification, embryo involved_inIDA 2290270 PMID:9054360BHF-UCLPMID:9054360
Wnt5aMouseanterior/posterior pattern specification acts_upstream_of_or_withinIMPMGI:18576172290270 PMID:15073149 and PMID:19795512MGIPMID:15073149 and PMID:19795512
Wnt5aMouseatrial septum development involved_inIGIUniProtKB:P486152290270 PMID:22569553CACAOPMID:22569553
Wnt5aMouseaxis elongation acts_upstream_of_or_withinIMPMGI:18576172290270 PMID:19100728 and PMID:19795512MGIPMID:19100728 and PMID:19795512
Wnt5aMouseaxon extension involved in axon guidance acts_upstream_ofIGIMGI:1017662290270 PMID:16723543MGIPMID:16723543
Wnt5aMouseaxon guidance involved_inIDA 2290270 PMID:21483795UniProtPMID:21483795
Wnt5aMouseaxonal fasciculation involved_inTAS 2290270 PMID:22290867ParkinsonsUK-UCLPMID:22290867
Wnt5aMouseaxonogenesis involved_inIDA 2290270 PMID:23517308ParkinsonsUK-UCLPMID:23517308
Wnt5aMouseBMP signaling pathway acts_upstream_ofIMPMGI:18576172290270 PMID:18351662MGIPMID:18351662
Wnt5aMousecanonical Wnt signaling pathway acts_upstream_of_or_withinIGIMGI:1085202290270 PMID:16602827MGIPMID:16602827
Wnt5aMousecanonical Wnt signaling pathway involved_inIDA 2290270 PMID:18929644 and PMID:24681597BHF-UCLPMID:18929644 and PMID:24681597
Wnt5aMousecanonical Wnt signaling pathway acts_upstream_of_or_withinIDA 2290270 PMID:17804636MGIPMID:17804636
Wnt5aMousecanonical Wnt signaling pathway acts_upstream_of_or_withinIMP 2290270 PMID:17804636MGIPMID:17804636
Wnt5aMousecanonical Wnt signaling pathway acts_upstream_ofIMP 2290270 PMID:12952940 and PMID:18070933MGIPMID:12952940 and PMID:18070933
Wnt5aMousecanonical Wnt signaling pathway involved_inIBAPANTHER:PTN000246517 more ...2290270 GO_CentralGO_REF:0000033
Wnt5aMousecartilage development involved_inIEAUniProtKB-KW:KW-08912290270 UniProtGO_REF:0000043
Wnt5aMousecell differentiation  ISOWnt5a (Rattus norvegicus)9068941 RGDPMID:16780995 and REF_RGD_ID:2317900
1 to 20 of 278 rows

Cellular Component
1 to 17 of 17 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Wnt5aMousecell surface located_inIDA 2290270 PMID:8167409BHF-UCLPMID:8167409
Wnt5aMouseendoplasmic reticulum lumen located_inTAS 2290270 ReactomeReactome:R-MMU-3238692
Wnt5aMouseextracellular matrix located_inIDA 2290270 PMID:8167409MGIPMID:8167409
Wnt5aMouseextracellular region located_inTAS 2290270 ReactomeReactome:R-MMU-3769366 more ...
Wnt5aMouseextracellular space located_inISOWnt5a (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Wnt5aMouseextracellular space located_inIEAUniProtKB:P41221 and ensembl:ENSP000002646342290270 EnsemblGO_REF:0000107
Wnt5aMouseextracellular space located_inISOUniProtKB:P412212290270 GO_CentralGO_REF:0000119
Wnt5aMouseextracellular space is_active_inIBAPANTHER:PTN000246517 more ...2290270 GO_CentralGO_REF:0000033
Wnt5aMouseextracellular space  ISOWnt5a (Rattus norvegicus)9068941 RGDPMID:16243537 and REF_RGD_ID:2317901
Wnt5aMouseglutamatergic synapse is_active_inISOWnt5a (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Wnt5aMouseglutamatergic synapse is_active_inIDA 2290270 PMID:28069946SynGOPMID:28069946
Wnt5aMouseglutamatergic synapse is_active_inIMP 2290270 PMID:28069946SynGOPMID:28069946
Wnt5aMouseglutamatergic synapse is_active_inISOUniProtKB:P412212290270 GO_CentralGO_REF:0000119
Wnt5aMousepostsynapse located_inIEAGO:0099170 and GO:00995662290270 GOCGO_REF:0000108
Wnt5aMouseSchaffer collateral - CA1 synapse is_active_inIDA 2290270 PMID:28069946SynGOPMID:28069946
Wnt5aMouseSchaffer collateral - CA1 synapse is_active_inIMP 2290270 PMID:28069946SynGOPMID:28069946
Wnt5aMouseSchaffer collateral - CA1 synapse is_active_inISOWnt5a (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
1 to 17 of 17 rows

Molecular Function
1 to 20 of 23 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Wnt5aMousechemoattractant activity involved in axon guidance enablesIDA 2290270 PMID:21106844ParkinsonsUK-UCLPMID:21106844
Wnt5aMousecytokine activity enablesIDA 2290270 PMID:18986540BHF-UCLPMID:18986540
Wnt5aMousecytokine activity enablesIBAPANTHER:PTN000246517 more ...2290270 GO_CentralGO_REF:0000033
Wnt5aMousefrizzled binding enablesIPIUniProtKB:Q9UP382290270 PMID:10557084BHF-UCLPMID:10557084
Wnt5aMousefrizzled binding enablesIDA 2290270 PMID:10893270 and PMID:19910923MGIPMID:10893270 and PMID:19910923
Wnt5aMousefrizzled binding enablesISOUniProtKB:P412212290270 GO_CentralGO_REF:0000119
Wnt5aMousefrizzled binding enablesIBAPANTHER:PTN000246517 more ...2290270 GO_CentralGO_REF:0000033
Wnt5aMouseprotein binding enablesIPIUniProtKB:Q6DID72290270 PMID:19841259UniProtPMID:19841259
Wnt5aMouseprotein binding enablesIPIUniProtKB:O350822290270 PMID:17690294IntActPMID:17690294
Wnt5aMouseprotein binding enablesIPIPR:Q9JJJ72290270 PMID:10866835MGIPMID:10866835
Wnt5aMouseprotein binding enablesIPIPR:O885722290270 PMID:19056682MGIPMID:19056682
Wnt5aMouseprotein binding enablesIPIPR:Q9D1D6 and PR:Q9Z1382290270 PMID:18606138MGIPMID:18606138
Wnt5aMouseprotein binding enablesIPIPR:P972992290270 PMID:17462603MGIPMID:17462603
Wnt5aMouseprotein binding enablesIPIUniProtKB:Q8N4742290270 PMID:17462603ParkinsonsUK-UCLPMID:17462603
Wnt5aMouseprotein binding enablesIPIPR:Q6DID72290270 PMID:33324648MGIPMID:33324648
Wnt5aMouseprotein binding enablesIPIPR:Q9Z1382290270 PMID:12839624MGIPMID:12839624
Wnt5aMouseprotein binding enablesIPIUniProtKB:Q9Y5W52290270 PMID:22986341IntActPMID:22986341
Wnt5aMouseprotein domain specific binding enablesIPIUniProtKB:Q018872290270 PMID:16723543UniProtPMID:16723543
Wnt5aMousereceptor tyrosine kinase-like orphan receptor binding enablesISOUniProtKB:P412212290270 GO_CentralGO_REF:0000119
Wnt5aMousereceptor tyrosine kinase-like orphan receptor binding enablesIEAUniProtKB:P41221 and ensembl:ENSP000002646342290270 EnsemblGO_REF:0000107
1 to 20 of 23 rows

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Wnt5aMouseWnt signaling pathway  TAS 2301993 RGD 
Wnt5aMouseWnt signaling, canonical pathway   ISOWNT5A (Homo sapiens)2313743 RGD 

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Wnt5aMousebasal cell carcinoma pathway  IEA 6907045 KEGGmmu:05217
Wnt5aMouseHedgehog signaling pathway   IEA 6907045 KEGGmmu:04340
Wnt5aMouseWnt signaling pathway  IEA 6907045 KEGGmmu:04310

Imported Annotations - PID (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Wnt5aMouseWnt signaling, non-canonical pathway  ISOWNT5A (Homo sapiens)6484113 PIDPID:200020
1 to 20 of 107 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Wnt5aMouseabnormal anus morphology  IAGP 5509061 MGIPMID:19577771
Wnt5aMouseabnormal autopod morphology  IEA 5509061 MGI 
Wnt5aMouseabnormal axon extension  IAGP 5509061 MGIPMID:23454479
Wnt5aMouseabnormal colon morphology  IAGP 5509061 MGIPMID:19577771
Wnt5aMouseabnormal craniofacial morphology  IAGP 5509061 MGIPMID:23454479
Wnt5aMouseabnormal digestive system development  IAGP 5509061 MGIPMID:24091014
Wnt5aMouseabnormal embryo attachment  IAGP 5509061 MGIPMID:25043182
Wnt5aMouseabnormal embryo development  IAGP 5509061 MGIPMID:25043182
Wnt5aMouseabnormal embryonic tissue morphology  IAGP 5509061 MGIPMID:10021340
Wnt5aMouseabnormal heart morphology  IAGP 5509061 MGIPMID:26526197
Wnt5aMouseabnormal heart right ventricle morphology  IAGP 5509061 MGIPMID:26526197
Wnt5aMouseabnormal interventricular septum morphology  IAGP 5509061 MGIPMID:26526197
Wnt5aMouseabnormal intestine morphology  IEA 5509061 MGI 
Wnt5aMouseabnormal intestine regeneration  IAGP 5509061 MGIPMID:22956684
Wnt5aMouseabnormal kidney morphology  IEA 5509061 MGI 
Wnt5aMouseabnormal limb morphology  IAGP 5509061 MGIPMID:19285468
Wnt5aMouseabnormal liver morphology  IAGP 5509061 MGIPMID:19577771
Wnt5aMouseabnormal lung development  IAGP 5509061 MGIPMID:12142021
Wnt5aMouseabnormal lung interstitium morphology  IAGP 5509061 MGIPMID:12142021
Wnt5aMouseabnormal maternal decidual layer morphology  IAGP 5509061 MGIPMID:25043182
1 to 20 of 107 rows

1 to 15 of 15 rows
#
Reference Title
Reference Citation
1. Quercetin Confers Tumoricidal Activity Through Multipathway Mechanisms in A N-Methylnitrosourea Rat Model of Colon Cancer Ahmed HH, etal., Asian Pac J Cancer Prev. 2016 Nov 1;17(11):4991-4998. doi: 10.22034/APJCP.2016.17.11.4991.
2. Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis. Brady KP, etal., Genome Res 1997 Nov;7(11):1085-93.
3. Expression and hormone regulation of Wnt2, 3, 4, 5a, 7a, 7b and 10b in normal human endometrium and endometrial carcinoma. Bui TD, etal., Br J Cancer. 1997;75(8):1131-6.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. MGD IEA MGD IEA
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Wnt signaling in the ovary: identification and compartmentalized expression of wnt-2, wnt-2b, and frizzled-4 mRNAs. Ricken A, etal., Endocrinology 2002 Jul;143(7):2741-9.
13. The Wnt Homepage Roel Nusse - Howard Hughes Medical Institute and the Department of Developmental Biology at Stanford University, California, USA
14. Alternative wnt signaling is initiated by distinct receptors. van Amerongen R, etal., Sci Signal. 2008 Sep 2;1(35):re9.
15. Multiple mouse chromosomal loci for dynein-based motility. Vaughan KT, etal., Genomics 1996 Aug 15;36(1):29-38.
1 to 15 of 15 rows
1 to 10 of 59 rows
PMID:1373817   PMID:1534034   PMID:1846319   PMID:2279700   PMID:7556445   PMID:7588057   PMID:7896292   PMID:7908629   PMID:7915533   PMID:7958454   PMID:8058323   PMID:8167409  
PMID:8275860   PMID:8288227   PMID:8299937   PMID:8575294   PMID:8858134   PMID:8887323   PMID:8889548   PMID:8938449   PMID:9006074   PMID:9054360   PMID:9160667   PMID:9203584  
PMID:9415428   PMID:9417917   PMID:9435283   PMID:9441761   PMID:9584130   PMID:9620855   PMID:9671592   PMID:9671940   PMID:9712518   PMID:9828146   PMID:9889131   PMID:10021340  
PMID:10049363   PMID:10090727   PMID:10325223   PMID:10349636   PMID:10415363   PMID:10473117   PMID:10557084   PMID:10585256   PMID:10642791   PMID:10729342   PMID:10806358   PMID:10866835  
PMID:10893270   PMID:11042159   PMID:11044609   PMID:11076861   PMID:11092808   PMID:11165475   PMID:11217851   PMID:11429295   PMID:11520664   PMID:11543617   PMID:11719201   PMID:11738789  
PMID:11914369   PMID:12074550   PMID:12142021   PMID:12193642   PMID:12203726   PMID:12412008   PMID:12413903   PMID:12433684   PMID:12466851   PMID:12477932   PMID:12538525   PMID:12591596  
PMID:12697065   PMID:12702652   PMID:12812787   PMID:12815618   PMID:12839624   PMID:12952940   PMID:12958364   PMID:14557550   PMID:14602679   PMID:14628042   PMID:14667502   PMID:14671310  
PMID:14681479   PMID:15037319   PMID:15044261   PMID:15053977   PMID:15057272   PMID:15073149   PMID:15136142   PMID:15136151   PMID:15143170   PMID:15147765   PMID:15226823   PMID:15242796  
PMID:15306564   PMID:15342465   PMID:15342729   PMID:15472070   PMID:15533830   PMID:15576404   PMID:15617677   PMID:15637299   PMID:15748172   PMID:15800025   PMID:15831454   PMID:15858069  
PMID:15880404   PMID:15917450   PMID:15929941   PMID:16115200   PMID:16116452   PMID:16141072   PMID:16141073   PMID:16150699   PMID:16169547   PMID:16246260   PMID:16251184   PMID:16330189  
1 to 10 of 59 rows



Wnt5a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391428,224,962 - 28,249,405 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1428,226,707 - 28,249,405 (+)EnsemblGRCm39 Ensembl
GRCm381428,504,543 - 28,527,448 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1428,504,750 - 28,527,448 (+)EnsemblGRCm38mm10GRCm38
MGSCv371429,318,659 - 29,338,620 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361427,332,339 - 27,352,300 (+)NCBIMGSCv36mm8
Celera1424,754,276 - 24,774,180 (+)NCBICelera
Cytogenetic Map14A3NCBI
cM Map1416.8NCBI
WNT5A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38355,465,715 - 55,505,263 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl355,465,715 - 55,490,539 (-)EnsemblGRCh38hg38GRCh38
GRCh37355,499,743 - 55,521,334 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36355,474,783 - 55,496,371 (-)NCBINCBI36Build 36hg18NCBI36
Build 34355,474,783 - 55,496,371NCBI
Celera355,465,957 - 55,488,272 (-)NCBICelera
Cytogenetic Map3p14.3NCBI
HuRef355,548,623 - 55,570,480 (-)NCBIHuRef
CHM1_1355,451,089 - 55,473,010 (-)NCBICHM1_1
T2T-CHM13v2.0355,499,921 - 55,539,460 (-)NCBIT2T-CHM13v2.0
Wnt5a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8163,702,300 - 3,724,860 (+)NCBIGRCr8
mRatBN7.2163,697,032 - 3,718,230 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl163,697,032 - 3,718,234 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx163,703,581 - 3,724,806 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0164,848,997 - 4,870,222 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0163,708,537 - 3,729,736 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0164,469,451 - 4,490,271 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl164,469,468 - 4,489,860 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0164,414,512 - 4,433,990 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4163,782,025 - 3,799,625 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1163,782,022 - 3,799,623 (+)NCBI
Celera163,644,605 - 3,665,720 (+)NCBICelera
Cytogenetic Map16p16NCBI
Wnt5a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554305,304,745 - 5,325,684 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554305,304,817 - 5,325,684 (-)NCBIChiLan1.0ChiLan1.0
WNT5A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2255,448,868 - 55,472,802 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1355,453,639 - 55,475,159 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0355,396,279 - 55,418,579 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1356,617,006 - 56,639,367 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl356,621,380 - 56,638,051 (-)Ensemblpanpan1.1panPan2
WNT5A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12034,756,430 - 34,790,937 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2034,769,930 - 34,786,673 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2034,700,143 - 34,711,111 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02035,028,713 - 35,063,140 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2035,042,240 - 35,061,488 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12034,490,948 - 34,501,920 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02034,851,115 - 34,862,094 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02035,066,932 - 35,077,922 (+)NCBIUU_Cfam_GSD_1.0
Wnt5a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118172,893,045 - 172,913,645 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364736,029,976 - 6,052,159 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364736,031,627 - 6,052,211 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WNT5A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1337,344,699 - 37,367,207 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11337,344,684 - 37,367,215 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21340,872,351 - 40,892,735 (-)NCBISscrofa10.2Sscrofa10.2susScr3
WNT5A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12216,809,454 - 16,836,815 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2216,809,451 - 16,825,048 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041150,043,734 - 150,071,018 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wnt5a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248221,825,238 - 1,841,288 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248221,824,378 - 1,843,599 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Wnt5a
813 total Variants

Predicted Target Of
Summary Value
Count of predictions:2844
Count of miRNA genes:773
Interacting mature miRNAs:1018
Transcripts:ENSMUST00000063465, ENSMUST00000112272, ENSMUST00000134163, ENSMUST00000134766, ENSMUST00000146192, ENSMUST00000151929
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 14 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
27226748Femd8_mfemur midshaft diameter 8, 10 week (mouse)141376927346737457Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
4141265Appd2_mAPP associated premature death 2 (mouse)Not determined14594555230114862Mouse
1301372Sluc13_msusceptibility to lung cancer 13 (mouse)Not determined141882760452827726Mouse
4141550Dbm3_mdiabetes modifier 3 (mouse)Not determined514347339143596Mouse
1300544Hypn_mhyperinsulinemia (mouse)Not determined141516061649160765Mouse
1301991Wta3_mweight adult 3 (mouse)Not determined14388747337887650Mouse
4141864Mrdq4_mmodifier of retinal degeneration QTL 4 (mouse)Not determined992324548765082Mouse

1 to 10 of 14 rows
Wnt5a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371429,336,653 - 29,336,839UniSTSGRCm37
MGSCv371429,336,521 - 29,337,004UniSTSGRCm37
MGSCv371429,325,020 - 29,326,437UniSTSGRCm37
MGSCv371429,325,104 - 29,326,483UniSTSGRCm37
MGSCv371429,338,457 - 29,338,662UniSTSGRCm37
MGSCv371429,335,893 - 29,336,113UniSTSGRCm37
MGSCv371429,337,701 - 29,338,233UniSTSGRCm37
MGSCv371429,335,893 - 29,336,081UniSTSGRCm37
Celera1424,774,017 - 24,774,222UniSTS
Celera1424,771,453 - 24,771,673UniSTS
Celera1424,773,261 - 24,773,793UniSTS
Celera1424,760,723 - 24,762,102UniSTS
Celera1424,772,081 - 24,772,564UniSTS
Celera1424,760,639 - 24,762,056UniSTS
Celera1424,772,213 - 24,772,399UniSTS
Celera1424,771,453 - 24,771,641UniSTS
Cytogenetic Map14A3UniSTS
cM Map147.8UniSTS
cM Map147.8UniSTS
cM Map147.8UniSTS
cM Map147.8UniSTS
BB055853  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381428,513,939 - 28,514,077UniSTSGRCm38
MGSCv371429,327,125 - 29,327,263UniSTSGRCm37
Celera1424,762,744 - 24,762,882UniSTS
Cytogenetic Map14A3UniSTS
cM Map147.8UniSTS
Whitehead/MRC_RH14217.38UniSTS
MDB0332  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381428,525,268 - 28,525,433UniSTSGRCm38
MGSCv371429,338,454 - 29,338,619UniSTSGRCm37
Celera1424,774,014 - 24,774,179UniSTS
Cytogenetic Map14A3UniSTS
cM Map147.8UniSTS
Whitehead_YAC14 UniSTS
UniSTS:237146  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381428,523,213 - 28,523,413UniSTSGRCm38
MGSCv371429,336,399 - 29,336,599UniSTSGRCm37
Celera1424,771,959 - 24,772,159UniSTS
Cytogenetic Map14A3UniSTS
cM Map147.8UniSTS
Wnt5a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381428,524,515 - 28,525,047UniSTSGRCm38
MGSCv371429,337,701 - 29,338,233UniSTSGRCm37
Celera1424,773,261 - 24,773,793UniSTS
Cytogenetic Map14A3UniSTS
Wnt5a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map14A3UniSTS
Wnt5a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381428,523,335 - 28,523,818UniSTSGRCm38
MGSCv371429,336,521 - 29,337,004UniSTSGRCm37
Celera1424,772,081 - 24,772,564UniSTS
Cytogenetic Map14A3UniSTS
Wnt5a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381428,523,467 - 28,523,653UniSTSGRCm38
MGSCv371429,336,653 - 29,336,839UniSTSGRCm37
Celera1424,772,213 - 24,772,399UniSTS
Cytogenetic Map14A3UniSTS
Wnt5a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map14A3UniSTS
Wnt5a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381428,511,834 - 28,513,251UniSTSGRCm38
MGSCv371429,325,020 - 29,326,437UniSTSGRCm37
Celera1424,760,639 - 24,762,056UniSTS
Cytogenetic Map14A3UniSTS
Wnt5a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map14A3UniSTS
Wnt5a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map14A3UniSTS
Wnt5a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map14A3UniSTS
Wnt5a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381428,511,918 - 28,513,297UniSTSGRCm38
MGSCv371429,325,104 - 29,326,483UniSTSGRCm37
Celera1424,760,723 - 24,762,102UniSTS
Cytogenetic Map14A3UniSTS
Wnt5a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381428,525,271 - 28,525,476UniSTSGRCm38
MGSCv371429,338,457 - 29,338,662UniSTSGRCm37
Celera1424,774,017 - 24,774,222UniSTS
Cytogenetic Map14A3UniSTS
cM Map147.8UniSTS
Wnt5a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381428,522,707 - 28,522,895UniSTSGRCm38
MGSCv371429,335,893 - 29,336,081UniSTSGRCm37
Celera1424,771,453 - 24,771,641UniSTS
Cytogenetic Map14A3UniSTS
cM Map147.8UniSTS
Wnt5a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381428,522,707 - 28,522,927UniSTSGRCm38
MGSCv371429,335,893 - 29,336,113UniSTSGRCm37
Celera1424,771,453 - 24,771,673UniSTS
Cytogenetic Map14A3UniSTS
cM Map147.8UniSTS
Wnt5a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map14A3UniSTS
Wnt5a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map14A3UniSTS
Wnt5a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map14A3UniSTS
Wnt5a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map14A3UniSTS
Wnt5a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map14A3UniSTS






1 to 16 of 16 rows
RefSeq Transcripts NM_001256224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006518923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006518924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK031512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC018425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY721304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CQ970154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT025649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M89798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 16 of 16 rows

Ensembl Acc Id: ENSMUST00000063465   ⟹   ENSMUSP00000064878
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1428,226,707 - 28,249,405 (+)Ensembl
GRCm38.p6 Ensembl1428,504,750 - 28,527,448 (+)Ensembl
Ensembl Acc Id: ENSMUST00000112272   ⟹   ENSMUSP00000107891
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1428,233,362 - 28,247,391 (+)Ensembl
GRCm38.p6 Ensembl1428,511,405 - 28,525,434 (+)Ensembl
Ensembl Acc Id: ENSMUST00000134163
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1428,233,347 - 28,245,474 (+)Ensembl
GRCm38.p6 Ensembl1428,511,390 - 28,523,517 (+)Ensembl
Ensembl Acc Id: ENSMUST00000134766
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1428,227,857 - 28,231,078 (+)Ensembl
GRCm38.p6 Ensembl1428,505,900 - 28,509,121 (+)Ensembl
Ensembl Acc Id: ENSMUST00000146192
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1428,233,408 - 28,233,864 (+)Ensembl
GRCm38.p6 Ensembl1428,511,451 - 28,511,907 (+)Ensembl
Ensembl Acc Id: ENSMUST00000151929
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1428,232,575 - 28,233,882 (+)Ensembl
GRCm38.p6 Ensembl1428,510,618 - 28,511,925 (+)Ensembl
RefSeq Acc Id: NM_001256224   ⟹   NP_001243153
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391428,233,362 - 28,249,404 (+)NCBI
GRCm381428,511,405 - 28,527,447 (+)NCBI
Celera1424,754,276 - 24,774,261 (+)ENTREZGENE
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_009524   ⟹   NP_033550
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391428,227,430 - 28,249,404 (+)NCBI
GRCm381428,505,473 - 28,527,447 (+)NCBI
MGSCv371429,318,659 - 29,338,620 (+)RGD
Celera1424,754,276 - 24,774,261 (+)ENTREZGENE
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006518923   ⟹   XP_006518986
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391428,233,466 - 28,249,405 (+)NCBI
GRCm381428,511,509 - 28,527,448 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006518924   ⟹   XP_006518987
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391428,231,751 - 28,247,077 (+)NCBI
GRCm381428,509,549 - 28,525,120 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030247779   ⟹   XP_030103639
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391428,224,962 - 28,247,077 (+)NCBI
GRCm381428,504,543 - 28,525,120 (+)NCBI
Sequence:
RefSeq Acc Id: NP_033550   ⟸   NM_009524
- Peptide Label: isoform 1 precursor
- UniProtKB: Q8BMF9 (UniProtKB/Swiss-Prot),   Q8BM17 (UniProtKB/Swiss-Prot),   Q8VCV6 (UniProtKB/Swiss-Prot),   P22725 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001243153   ⟸   NM_001256224
- Peptide Label: isoform 2 precursor
- UniProtKB: P22725 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006518987   ⟸   XM_006518924
- Peptide Label: isoform X2
- UniProtKB: P22725 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006518986   ⟸   XM_006518923
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030103639   ⟸   XM_030247779
- Peptide Label: isoform X2

Name Modeler Protein Id AA Range Protein Structure
AF-P22725-F1-model_v2 AlphaFold P22725 1-380 view protein structure

RGD ID:8681744
Promoter ID:EPDNEW_M18902
Type:initiation region
Name:Wnt5a_2
Description:Mus musculus wingless-type MMTV integration site family, member5A , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18903  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381428,505,789 - 28,505,849EPDNEW
RGD ID:8681746
Promoter ID:EPDNEW_M18903
Type:initiation region
Name:Wnt5a_1
Description:Mus musculus wingless-type MMTV integration site family, member5A , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18902  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381428,511,360 - 28,511,420EPDNEW
RGD ID:6825528
Promoter ID:MM_KWN:16031
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Liver,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000049665,   OTTMUST00000049668
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361429,316,971 - 29,318,727 (+)MPROMDB
RGD ID:6825530
Promoter ID:MM_KWN:16032
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:MEF_B4,   MEF_B6
Transcripts:OTTMUST00000049669
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361429,323,076 - 29,323,977 (+)MPROMDB
RGD ID:6825529
Promoter ID:MM_KWN:16034
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:MEF_B6
Transcripts:ENSMUST00000112272,   OTTMUST00000049667,   OTTMUST00000049670
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361429,324,576 - 29,325,076 (+)MPROMDB


1 to 27 of 27 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000021994 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000063465 ENTREZGENE
  ENSMUST00000063465.12 UniProtKB/Swiss-Prot
  ENSMUST00000112272 ENTREZGENE
  ENSMUST00000112272.2 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.2460.20 UniProtKB/Swiss-Prot
InterPro Wnt UniProtKB/Swiss-Prot
  Wnt_C UniProtKB/Swiss-Prot
  Wnt_CS UniProtKB/Swiss-Prot
KEGG Report mmu:22418 UniProtKB/Swiss-Prot
MGD MGI:98958 ENTREZGENE
NCBI Gene 22418 ENTREZGENE
PANTHER PTHR12027 UniProtKB/Swiss-Prot
  PTHR12027:SF33 UniProtKB/Swiss-Prot
Pfam wnt UniProtKB/Swiss-Prot
PhenoGen Wnt5a PhenoGen
PRINTS WNTPROTEIN UniProtKB/Swiss-Prot
PROSITE WNT1 UniProtKB/Swiss-Prot
SMART WNT1 UniProtKB/Swiss-Prot
UniProt P22725 ENTREZGENE
  Q8BM17 ENTREZGENE
  Q8BMF9 ENTREZGENE
  Q8VCV6 ENTREZGENE
  WNT5A_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q8BM17 UniProtKB/Swiss-Prot
  Q8BMF9 UniProtKB/Swiss-Prot
  Q8VCV6 UniProtKB/Swiss-Prot
1 to 27 of 27 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-07-01 Wnt5a  wingless-type MMTV integration site family, member 5A    wingless-related MMTV integration site 5A  Symbol and/or name change 5135510 APPROVED