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ONTOLOGY REPORT - ANNOTATIONS

Term:trans-Golgi network transport vesicle
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Accession:GO:0030140 term browser browse the term
Definition:A vesicle that mediates transport between the trans-Golgi network and other parts of the cell.
Synonyms:exact_synonym: TGN transport vesicle;   trans-Golgi network constitutive secretory pathway transport vesicle


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trans-Golgi network transport vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase copper transporting alpha located_in ISO (PMID:9817923) RGD PMID:9817923 NCBI chr  X:71,094,144...71,201,550
Ensembl chr  X:71,094,202...71,198,354 		JBrowse link
G Clrn1 clarin 1 located_in IEA
ISO		 GO_REF:0000107
(PMID:19539019)		 Ensembl
RGD		 PMID:19539019 GO_REF:0000107 NCBI chr 2:143,084,030...143,130,948
Ensembl chr 2:143,084,030...143,130,948 		JBrowse link
G Furin furin (paired basic amino acid cleaving enzyme) located_in ISO
IEA		 (PMID:15078902)
GO_REF:0000107		 RGD
Ensembl		 PMID:15078902 GO_REF:0000107 NCBI chr 1:134,348,142...134,361,182
Ensembl chr 1:134,348,144...134,364,314 		JBrowse link
G Gopc golgi associated PDZ and coiled-coil motif containing located_in ISO (PMID:11707463) RGD PMID:11707463 NCBI chr20:31,727,617...31,776,904
Ensembl chr20:31,727,620...31,776,903 		JBrowse link
G Igf2r insulin-like growth factor 2 receptor located_in ISO (PMID:15078902) RGD PMID:15078902 NCBI chr 1:47,979,109...48,067,501
Ensembl chr 1:47,979,109...48,067,501 		JBrowse link
G Lyz2 lysozyme 2 IDA RGD PMID:9208328 RGD:1599861 NCBI chr 7:52,906,810...52,912,154
Ensembl chr 7:52,906,811...52,912,106 		JBrowse link
G Rab12 RAB12, member RAS oncogene family is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:106,480,301...106,506,895
Ensembl chr 9:106,480,301...106,506,910 		JBrowse link
G Rab13 RAB13, member RAS oncogene family is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:175,674,894...175,680,043
Ensembl chr 2:175,675,005...175,680,036 		JBrowse link
G Rab14 RAB14, member RAS oncogene family located_in IDA PMID:15004230 UniProt PMID:15004230 RGD:8554557 NCBI chr 3:18,501,953...18,523,253
Ensembl chr 3:18,501,963...18,523,172 		JBrowse link
G Rab27b RAB27B, member RAS oncogene family located_in ISO (PMID:19966785) RGD PMID:19966785 NCBI chr18:63,597,554...63,794,124
Ensembl chr18:63,600,937...63,757,180 		JBrowse link
G Rab8a RAB8A, member RAS oncogene family located_in
is_active_in		 IEA
IBA
ISO		 GO_REF:0000107
GO_REF:0000033
(PMID:17765678)		 Ensembl
GO_Central
RGD		 PMID:17765678 GO_REF:0000033 GO_REF:0000107 NCBI chr16:17,654,027...17,675,385
Ensembl chr16:17,654,034...17,675,678 		JBrowse link
G Rab8b RAB8B, member RAS oncogene family is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:67,458,921...67,536,466
Ensembl chr 8:67,458,923...67,536,384 		JBrowse link
G Slc2a4 solute carrier family 2 member 4 located_in ISO (PMID:17003038) RGD PMID:17003038 NCBI chr10:54,666,015...54,671,581
Ensembl chr10:54,666,015...54,671,565 		JBrowse link
G Sort1 sortilin 1 located_in IEA
ISO		 GO_REF:0000107
(PMID:15078902)		 Ensembl
RGD		 PMID:15078902 GO_REF:0000107 NCBI chr 2:195,924,033...196,002,354
Ensembl chr 2:195,924,099...196,002,354 		JBrowse link
G Spg21 SPG21 abhydrolase domain containing, maspardin located_in
is_active_in		 ISO
IBA
IEA
ISS		 (PMID:11113139)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024		 RGD
GO_Central
Ensembl
UniProt		 PMID:11113139 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:65,980,992...66,008,537
Ensembl chr 8:65,980,962...66,008,536 		JBrowse link
G Steap2 STEAP2 metalloreductase located_in ISO (PMID:12095985) RGD PMID:12095985 NCBI chr 4:28,347,769...28,368,177
Ensembl chr 4:28,348,362...28,375,791 		JBrowse link
G Tgoln2 trans-golgi network protein 2 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:104,663,356...104,671,208
Ensembl chr 4:104,663,353...104,671,164 		JBrowse link
G Tmed10 transmembrane p24 trafficking protein 10 located_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 6:104,991,843...105,026,705
Ensembl chr 6:104,991,838...105,026,753 		JBrowse link
AP-1 adaptor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aftph aftiphilin part_of ISO
IBA		 (PMID:15758025)
GO_REF:0000033		 RGD
GO_Central		 PMID:15758025 GO_REF:0000033 NCBI chr14:94,871,429...94,925,625
Ensembl chr14:94,871,429...94,925,376 		JBrowse link
G Ap1g1 adaptor related protein complex 1 subunit gamma 1 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:37,744,633...37,831,134
Ensembl chr19:37,744,633...37,829,167 		JBrowse link
G Ap1g2 adaptor related protein complex 1 subunit gamma 2 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:28,571,571...28,579,421
Ensembl chr15:28,571,568...28,589,004 		JBrowse link
G Ap1s1 adaptor related protein complex 1 subunit sigma 1 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr12:19,625,267...19,635,792
Ensembl chr12:19,625,332...19,756,713 		JBrowse link
G Ap1s2 adaptor related protein complex 1 subunit sigma 2 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:30,572,746...30,598,961
Ensembl chr  X:30,572,751...30,597,262 		JBrowse link
G Ap1s3 adaptor related protein complex 1 subunit sigma 3 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:80,950,402...81,009,889
Ensembl chr 9:80,950,715...81,009,798 		JBrowse link
G Clba1 clathrin binding box of aftiphilin containing 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:131,882,866...131,889,662
Ensembl chr 6:131,882,609...131,889,662 		JBrowse link
G Slc18a3 solute carrier family 18 member A3 part_of IDA
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:14724281 GO_REF:0000033, RGD:2317430 NCBI chr16:7,713,630...7,716,491 JBrowse link
clathrin coat of trans-Golgi network vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clta clathrin, light chain A part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:58,244,253...58,263,480
Ensembl chr 5:58,245,442...58,263,472 		JBrowse link
G Cltb clathrin, light chain B part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:10,001,512...10,019,201
Ensembl chr17:10,001,513...10,019,169 		JBrowse link
G Cltc clathrin heavy chain part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:71,517,661...71,574,591
Ensembl chr10:71,517,663...71,573,737 		JBrowse link
G Dnm1l dynamin 1-like NOT|part_of IDA PMID:9472031 ParkinsonsUK-UCL PMID:9472031 RGD:11535088 NCBI chr11:84,581,216...84,632,382
Ensembl chr11:84,581,216...84,631,482 		JBrowse link
G Synrg synergin, gamma part_of IDA
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:10477754 GO_REF:0000033, RGD:631945 NCBI chr10:68,848,828...68,931,252
Ensembl chr10:68,849,642...68,931,250 		JBrowse link
cytoplasmic side of trans-Golgi network transport vesicle membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap4b1 adaptor related protein complex 4 subunit beta 1 located_in ISO (PMID:10066790) RGD PMID:10066790 NCBI chr 2:191,318,485...191,330,531
Ensembl chr 2:191,318,482...191,330,531 		JBrowse link
trans-Golgi network transport vesicle membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrgn neurogranin IDA RGD PMID:8891262 RGD:9835422 NCBI chr 8:37,255,462...37,263,659
Ensembl chr 8:37,256,930...37,257,516 		JBrowse link
G Rassf9 Ras association domain family member 9 located_in
is_active_in		 IDA
IBA
IEA
ISO		 PMID:9837933
GO_REF:0000033
GO_REF:0000107
(PMID:9837933)		 GO_Central
Ensembl
RGD		 PMID:9837933 PMID:9837933 GO_REF:0000033 GO_REF:0000107, RGD:633607 NCBI chr 7:37,599,720...37,631,553
Ensembl chr 7:37,599,720...37,635,245 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20630
    cellular anatomical entity 20391
      endomembrane system 4272
        transport vesicle 450
          trans-Golgi network transport vesicle 34
            exomer complex 0
            trans-Golgi network transport vesicle lumen 0
            trans-Golgi network transport vesicle membrane + 16
Path 2
Term Annotations click to browse term
  cellular_component 20630
    cellular anatomical entity 20391
      organelle 13803
        intracellular organelle 13394
          intracellular membrane-bounded organelle 11846
            intracellular vesicle 2045
              cytoplasmic vesicle 2038
                coated vesicle 234
                  clathrin-coated vesicle 142
                    trans-Golgi network transport vesicle 34
                      exomer complex 0
                      trans-Golgi network transport vesicle lumen 0
                      trans-Golgi network transport vesicle membrane + 16
paths to the root