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ONTOLOGY REPORT - ANNOTATIONS


Term:clathrin-coated vesicle
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Accession:GO:0030136 term browser browse the term
Definition:A vesicle with a coat formed of clathrin connected to the membrane via one of the clathrin adaptor complexes.
Synonyms:xref: NIF_Subcellular:sao148845161



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clathrin-coated vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb4 ATP binding cassette subfamily B member 4 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 4:25,150,998...25,209,489
Ensembl chr 4:25,151,953...25,209,202
JBrowse link
G Adam10 ADAM metallopeptidase domain 10 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:71,346,008...71,477,889
Ensembl chr 8:71,345,837...71,477,889
JBrowse link
G Ap1g1 adaptor related protein complex 1 subunit gamma 1 located_in ISO (PMID:12536145) RGD PMID:12536145 NCBI chr19:37,744,666...37,831,131
Ensembl chr19:37,744,633...37,829,167
JBrowse link
G Ap1m1 adaptor related protein complex 1 subunit mu 1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:17,586,886...17,602,410
Ensembl chr16:17,584,730...17,602,403
JBrowse link
G Ap1m2 adaptor related protein complex 1 subunit mu 2 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:19,838,579...19,856,560
Ensembl chr 8:19,838,580...19,856,482
JBrowse link
G Ap2a1 adaptor related protein complex 2 subunit alpha 1 IDA RGD PMID:11889126 RGD:708337 NCBI chr 1:95,384,303...95,414,249
Ensembl chr 1:95,384,309...95,414,147
JBrowse link
G Aqp2 aquaporin 2 IDA RGD PMID:18843259 RGD:2313123 NCBI chr 7:130,711,433...130,716,468
Ensembl chr 7:130,711,413...130,716,468
JBrowse link
G Bcap31 B-cell receptor-associated protein 31 IDA RGD PMID:9396746 RGD:7483571 NCBI chr  X:151,397,567...151,429,666
Ensembl chr  X:151,397,576...151,428,506
JBrowse link
G Clint1 clathrin interactor 1 IDA RGD PMID:12213833 RGD:1303953 NCBI chr10:30,298,618...30,353,185
Ensembl chr10:30,298,704...30,353,063
JBrowse link
G Clta clathrin, light chain A IDA RGD PMID:15933375 RGD:2301372 NCBI chr 5:58,244,253...58,263,480
Ensembl chr 5:58,245,442...58,263,472
JBrowse link
G Cltc clathrin heavy chain located_in ISO (PMID:19478182) RGD PMID:19478182 NCBI chr10:71,517,661...71,574,591
Ensembl chr10:71,517,663...71,573,737
JBrowse link
G Clvs1 clavesin 1 located_in
is_active_in
IEA
IBA
IDA
GO_REF:0000044
PMID:21873635
PMID:19651769
UniProt PMID:21873635 PMID:19651769 GO_REF:0000044, RGD:13792537, RGD:8553526 NCBI chr 5:22,408,384...22,604,281
Ensembl chr 5:22,408,384...22,604,270
JBrowse link
G Clvs2 clavesin 2 located_in
is_active_in
IDA
IBA
PMID:19651769
PMID:21873635
UniProt
GO_Central
PMID:19651769 PMID:21873635 RGD:8553526, RGD:13792537 NCBI chr 1:23,735,272...23,762,997
Ensembl chr 1:23,735,272...23,842,692
JBrowse link
G Dab2 DAB adaptor protein 2 located_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:55,514,692...55,567,476
Ensembl chr 2:55,514,700...55,567,476
JBrowse link
G Dennd1a DENN domain containing 1A located_in
is_active_in
ISO
IBA
(PMID:20937701)
PMID:21873635
(MGI:3694831|PMID:17182770)
RGD PMID:17182770 PMID:20937701 PMID:21873635 MGI:3694831, RGD:13792537 NCBI chr 3:21,564,749...22,052,057
Ensembl chr 3:21,564,749...22,052,062
JBrowse link
G Dvl1 dishevelled segment polarity protein 1 located_in ISO (MGI:3777496|PMID:17005174) RGD PMID:17005174 MGI:3777496 NCBI chr 5:166,456,989...166,468,733
Ensembl chr 5:166,456,686...166,468,664
JBrowse link
G Dvl2 dishevelled segment polarity protein 2 located_in ISO (MGI:3777496|PMID:17005174) RGD PMID:17005174 MGI:3777496 NCBI chr10:54,723,356...54,732,823
Ensembl chr10:54,723,411...54,732,820
JBrowse link
G Epn3 epsin 3 located_in ISO (PMID:11359770) RGD PMID:11359770 NCBI chr10:79,438,978...79,449,516
Ensembl chr10:79,438,978...79,447,356
JBrowse link
G Eps15 epidermal growth factor receptor pathway substrate 15 located_in ISO (MGI:4887327|PMID:17626015) RGD PMID:17626015 MGI:4887327 NCBI chr 5:124,045,865...124,146,221
Ensembl chr 5:124,045,926...124,146,221
JBrowse link
G Fcho1 FCH and mu domain containing endocytic adaptor 1 NOT|colocalizes_with
is_active_in
ISO
IBA
(PMID:20448150)
PMID:21873635
RGD PMID:20448150 PMID:21873635 RGD:13792537 NCBI chr16:18,413,452...18,430,795
Ensembl chr16:18,413,363...18,435,104
JBrowse link
G Fcho2 FCH and mu domain containing endocytic adaptor 2 NOT|colocalizes_with
is_active_in
located_in
ISO
IBA
(MGI:5320276|PMID:20448150)
PMID:21873635
(MGI:5320266|PMID:21762413)
(PMID:21762413)
RGD PMID:20448150 PMID:21762413 PMID:21873635 MGI:5320266 MGI:5320276, RGD:13792537 NCBI chr 2:30,079,143...30,181,639
Ensembl chr 2:30,080,962...30,181,241
JBrowse link
G Gga2 golgi associated, gamma adaptin ear containing, ARF binding protein 2 located_in ISO (PMID:19478182) RGD PMID:19478182 NCBI chr 1:176,552,046...176,585,332
Ensembl chr 1:176,552,046...176,585,361
JBrowse link
G Gpr107 G protein-coupled receptor 107 located_in
is_active_in
ISO
IBA
(MGI:5604949|PMID:24849652)
PMID:21873635
RGD PMID:24849652 PMID:21873635 MGI:5604949, RGD:13792537 NCBI chr 3:14,431,704...14,497,623
Ensembl chr 3:14,434,723...14,495,958
JBrowse link
G Hax1 HCLS1 associated protein X-1 is_active_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:15159385 PMID:21873635 RGD:1302732, RGD:13792537 NCBI chr 2:175,434,242...175,437,926
Ensembl chr 2:175,434,238...175,437,714
JBrowse link
G Hip1 huntingtin interacting protein 1 is_active_in
located_in
IDA
IBA
ISO
PMID:21873635
(PMID:11517213)
RGD PMID:11517213 PMID:11889126 PMID:21873635 RGD:708337, RGD:13792537 NCBI chr12:21,133,319...21,267,796
Ensembl chr12:21,133,406...21,267,725
JBrowse link
G Hip1r huntingtin interacting protein 1 related located_in
is_active_in
ISO
IBA
(PMID:11889126), (PMID:14732715)
PMID:21873635
(MGI:1351058|PMID:10613908)
RGD PMID:10613908 PMID:11889126 PMID:14732715 PMID:21873635 MGI:1351058, RGD:13792537 NCBI chr12:32,590,164...32,618,841
Ensembl chr12:32,590,165...32,618,734
JBrowse link
G Htt huntingtin IDA RGD PMID:20739295 RGD:6902917 NCBI chr14:75,845,836...75,996,094
Ensembl chr14:75,845,836...75,995,070
JBrowse link
G Lmbrd1 LMBR1 domain containing 1 located_in ISS
ISO
GO_REF:0000024
(MGI:5543853|PMID:24078630)
UniProt
RGD
PMID:24078630 GO_REF:0000024 MGI:5543853 NCBI chr 9:27,096,387...27,178,095
Ensembl chr 9:27,096,297...27,178,090
JBrowse link
G Lrp1 LDL receptor related protein 1 IDA RGD PMID:16190982 RGD:1581917 NCBI chr 7:63,380,325...63,461,029
Ensembl chr 7:63,380,356...63,460,910
JBrowse link
G Mall mal, T-cell differentiation protein-like located_in ISO (PMID:11294831) RGD PMID:11294831 NCBI chr 3:114,927,897...114,950,840
Ensembl chr 3:114,927,897...114,950,785
JBrowse link
G Mlc1 modulator of VRAC current 1 NOT|located_in IDA PMID:19931615 UniProt PMID:19931615 RGD:2326037 NCBI chr 7:120,046,705...120,067,049
Ensembl chr 7:120,046,705...120,067,049
JBrowse link
G Numb NUMB, endocytic adaptor protein located_in IEA
ISO
GO_REF:0000107
(PMID:19581412)
Ensembl
RGD
PMID:19581412 GO_REF:0000107 NCBI chr 6:103,431,400...103,553,422
Ensembl chr 6:103,431,400...103,553,354
JBrowse link
G Ocrl OCRL, inositol polyphosphate-5-phosphatase located_in ISO
ISS
(PMID:21233288), (PMID:25869668)
GO_REF:0000024
RGD
UniProt
PMID:21233288 PMID:25869668 GO_REF:0000024 NCBI chr  X:127,089,508...127,140,362
Ensembl chr  X:127,089,590...127,140,362
JBrowse link
G Pheta1 PH domain containing endocytic trafficking adaptor 1 located_in ISO (PMID:21233288) RGD PMID:21233288 NCBI chr12:34,711,831...34,717,601
Ensembl chr12:34,711,810...34,717,081
JBrowse link
G Pheta2 PH domain containing endocytic trafficking adaptor 2 located_in ISO (PMID:21233288) RGD PMID:21233288 NCBI chr 7:113,855,437...113,861,910
Ensembl chr 7:113,857,249...113,861,871
JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein located_in
is_active_in
IDA
IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
PMID:17640037
(PMID:25898166)
GO_REF:0000002
Ensembl
RGD
InterPro
PMID:25898166 PMID:11190274 PMID:21873635 PMID:17640037 PMID:18842885 GO_REF:0000002 GO_REF:0000107, RGD:1600754, RGD:13792537, RGD:8554206, RGD:8554167 NCBI chr 1:144,056,415...144,138,045
Ensembl chr 1:144,056,721...144,137,557
JBrowse link
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha located_in ISO (PMID:10766823), (PMID:11239472) RGD PMID:10766823 PMID:11239472 NCBI chr 1:170,577,942...170,684,353
Ensembl chr 1:170,577,942...170,683,472
JBrowse link
G Plcg1 phospholipase C, gamma 1 IDA RGD PMID:11779129 RGD:70605 NCBI chr 3:149,385,587...149,416,330
Ensembl chr 3:149,385,587...149,416,330
JBrowse link
G Rgs19 regulator of G-protein signaling 19 IDA RGD PMID:9571244 PMID:11912251 RGD:737647, RGD:2303813 NCBI chr 3:168,804,532...168,813,035
Ensembl chr 3:168,804,874...168,810,097
JBrowse link
G Scamp1 secretory carrier membrane protein 1 located_in IDA PMID:10908612 ParkinsonsUK-UCL PMID:10908612 RGD:634537 NCBI chr 2:25,433,958...25,516,734
Ensembl chr 2:25,433,959...25,516,673
JBrowse link
G Sgip1 SH3GL interacting endocytic adaptor 1 located_in
is_active_in
ISS
IBA
ISO
PMID:17626015
PMID:21873635
(MGI:4887327|PMID:17626015)
RGD PMID:17626015 PMID:17626015 PMID:21873635 MGI:4887327, RGD:8554282, RGD:13792537 NCBI chr 5:117,536,752...117,734,593
Ensembl chr 5:117,537,746...117,734,575
JBrowse link
G Sh3bp4 SH3-domain binding protein 4 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 9:89,660,156...89,739,163
Ensembl chr 9:89,660,156...89,739,163
JBrowse link
G Slc2a4 solute carrier family 2 member 4 located_in ISO (PMID:19478182) RGD PMID:19478182 NCBI chr10:54,666,015...54,671,581
Ensembl chr10:54,666,015...54,671,565
JBrowse link
G Snap91 synaptosome associated protein 91 is_active_in
located_in
IDA
IBA
IEA
PMID:21873635
GO_REF:0000002
InterPro
RGD
PMID:18842885 PMID:21873635 GO_REF:0000002, RGD:8554167, RGD:13792537 NCBI chr 8:87,738,056...87,852,690
Ensembl chr 8:87,738,824...87,852,367
JBrowse link
G Snx18 sorting nexin 18 colocalizes_with ISO (PMID:20427313) RGD PMID:20427313 NCBI chr 2:45,232,325...45,258,345
Ensembl chr 2:45,232,325...45,258,345
JBrowse link
G Snx3 sorting nexin 3 located_in ISO
ISS
(PMID:21725319)
GO_REF:0000024
RGD
UniProt
PMID:21725319 GO_REF:0000024 NCBI chr20:45,992,446...46,025,361
Ensembl chr20:45,992,720...46,025,379
JBrowse link
G Snx9 sorting nexin 9 colocalizes_with ISO (PMID:15703209) RGD PMID:15703209 NCBI chr 1:46,424,897...46,510,096
Ensembl chr 1:46,423,553...46,509,036
JBrowse link
G Sort1 sortilin 1 located_in ISO (PMID:11331584) RGD PMID:11331584 NCBI chr 2:195,924,033...196,002,354
Ensembl chr 2:195,924,099...196,002,354
JBrowse link
G Ston1 stonin 1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:5,843,186...5,892,557
Ensembl chr 6:5,843,185...5,892,449
JBrowse link
G Ston2 stonin 2 located_in
is_active_in
ISO
IBA
(MGI:3688379|PMID:14726597)
PMID:21873635
RGD PMID:14726597 PMID:21873635 MGI:3688379, RGD:13792537 NCBI chr 6:110,567,485...110,676,376
Ensembl chr 6:110,567,485...110,676,376
JBrowse link
G Tnk2 tyrosine kinase, non-receptor, 2 located_in ISO (PMID:18262180) RGD PMID:18262180 NCBI chr11:68,114,725...68,154,254
Ensembl chr11:68,114,726...68,154,009
JBrowse link
G Vamp2 vesicle-associated membrane protein 2 located_in ISO
ISS
(PMID:19478182)
GO_REF:0000024
RGD
ParkinsonsUK-UCL
PMID:19478182 GO_REF:0000024 NCBI chr10:53,793,581...53,797,815
Ensembl chr10:53,793,923...53,797,809
JBrowse link
G Vamp3 vesicle-associated membrane protein 3 located_in ISO (PMID:19478182) RGD PMID:19478182 NCBI chr 5:161,498,109...161,508,704
Ensembl chr 5:161,498,109...161,508,751
JBrowse link
G Vps11 VPS11 core subunit of CORVET and HOPS complexes located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:44,683,768...44,698,572
Ensembl chr 8:44,684,127...44,698,568
JBrowse link
G Vps16 VPS16 core subunit of CORVET and HOPS complexes located_in ISO (MGI:5645203|PMID:21411634) RGD PMID:21411634 MGI:5645203 NCBI chr 3:117,622,534...117,644,041
Ensembl chr 3:117,622,542...117,646,441
JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr12:33,024,596...33,051,399
Ensembl chr12:33,024,650...33,051,393
JBrowse link
G Vps33b VPS33B, late endosome and lysosome associated located_in ISO (PMID:21411634) RGD PMID:21411634 NCBI chr 1:134,223,967...134,247,232
Ensembl chr 1:134,223,949...134,246,970
JBrowse link
G Vps41 VPS41 subunit of HOPS complex located_in ISO (PMID:21411634) RGD PMID:21411634 NCBI chr17:46,063,124...46,227,582
Ensembl chr17:46,063,124...46,227,791
JBrowse link
G Vti1a vesicle transport through interaction with t-SNAREs 1A IDA RGD PMID:10908612 RGD:634537 NCBI chr 1:254,356,343...254,661,854
Ensembl chr 1:254,356,429...254,661,852
JBrowse link
AP-1 adaptor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aftph aftiphilin part_of ISO
IBA
(PMID:15758025)
PMID:21873635
RGD PMID:15758025 PMID:21873635 RGD:13792537 NCBI chr14:94,871,429...94,925,625
Ensembl chr14:94,871,429...94,925,376
JBrowse link
G Ap1g2 adaptor related protein complex 1 subunit gamma 2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:28,571,571...28,579,421
Ensembl chr15:28,571,568...28,589,004
JBrowse link
G Ap1s1 adaptor related protein complex 1 subunit sigma 1 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr12:19,625,267...19,635,792
Ensembl chr12:19,625,332...19,756,713
JBrowse link
G Ap1s2 adaptor related protein complex 1 subunit sigma 2 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:30,572,746...30,598,961
Ensembl chr  X:30,572,751...30,597,262
JBrowse link
G Ap1s3 adaptor related protein complex 1 subunit sigma 3 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:80,950,402...81,039,685
Ensembl chr 9:80,950,715...81,009,798
JBrowse link
G Clba1 clathrin binding box of aftiphilin containing 1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:131,882,866...131,889,662
Ensembl chr 6:131,882,609...131,889,662
JBrowse link
G Slc18a3 solute carrier family 18 member A3 part_of IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:14724281 PMID:21873635 RGD:2317430, RGD:13792537 NCBI chr16:7,713,630...7,716,491 JBrowse link
AP-2 adaptor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap2a1 adaptor related protein complex 2 subunit alpha 1 part_of ISO
IBA
(PMID:23676497)
(MGI:5514106|PMID:23676497)
PMID:21873635
RGD PMID:23676497 PMID:21873635 MGI:5514106, RGD:13792537 NCBI chr 1:95,384,303...95,414,249
Ensembl chr 1:95,384,309...95,414,147
JBrowse link
G Ap2a2 adaptor related protein complex 2 subunit alpha 2 part_of IEA
ISO
IMP
IBA
GO_REF:0000002
GO_REF:0000107
(MGI:5514106|PMID:23676497)
PMID:12086608
PMID:21873635
(PMID:23676497)
InterPro
Ensembl
RGD
PMID:23676497 PMID:12086608 PMID:21873635 GO_REF:0000002 GO_REF:0000107 MGI:5514106, RGD:12793054, RGD:13792537 NCBI chr 1:196,652,315...196,725,609
Ensembl chr 1:196,652,337...196,725,603
JBrowse link
G Ap2b1 adaptor related protein complex 2 subunit beta 1 part_of ISO (PMID:12086608), (PMID:23676497)
(MGI:5514106|PMID:23676497)
RGD PMID:12086608 PMID:23676497 MGI:5514106 NCBI chr10:68,099,397...68,205,023
Ensembl chr10:68,099,547...68,205,013
JBrowse link
G Ap2m1 adaptor related protein complex 2 subunit mu 1 part_of IDA
ISO
IBA
PMID:12086608
(MGI:5514106|PMID:23676497)
PMID:21873635
(PMID:23676497)
RGD PMID:23676497 PMID:12086608 PMID:21873635 MGI:5514106, RGD:12793054, RGD:13792537 NCBI chr11:80,355,307...80,364,218
Ensembl chr11:80,328,041...80,364,140
JBrowse link
G Ap2s1 adaptor related protein complex 2 subunit sigma 1 part_of IDA
ISO
PMID:2040623
(MGI:5882913|PMID:12086608)
RGD PMID:12086608 PMID:7593184 PMID:2040623 MGI:5882913, RGD:2306270, RGD:727584 NCBI chr 1:77,417,496...77,428,903
Ensembl chr 1:77,417,477...77,428,905
JBrowse link
G Btbd8 BTB domain containing 8 colocalizes_with
part_of
IDA
ISO
PMID:29262337
(MGI:6104538|PMID:29262337)
(PMID:29262337)
RGD PMID:29262337 PMID:29262337 MGI:6104538, RGD:13601995 NCBI chr14:2,265,189...2,338,426
Ensembl chr14:2,266,454...2,334,393
JBrowse link
G Eps15 epidermal growth factor receptor pathway substrate 15 part_of ISO (MGI:4887327|PMID:17626015) RGD PMID:17626015 MGI:4887327 NCBI chr 5:124,045,865...124,146,221
Ensembl chr 5:124,045,926...124,146,221
JBrowse link
G Sgip1 SH3GL interacting endocytic adaptor 1 part_of ISS
ISO
IEA
PMID:17626015
(MGI:4887327|PMID:17626015)
GO_REF:0000107
RGD
Ensembl
PMID:17626015 PMID:17626015 GO_REF:0000107 MGI:4887327, RGD:8554282 NCBI chr 5:117,536,752...117,734,593
Ensembl chr 5:117,537,746...117,734,575
JBrowse link
G Slc18a3 solute carrier family 18 member A3 part_of IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:14724281 PMID:21873635 RGD:2317430, RGD:13792537 NCBI chr16:7,713,630...7,716,491 JBrowse link
G Tbc1d5 TBC1 domain family, member 5 colocalizes_with
part_of
ISO
IEA
(PMID:24603492)
GO_REF:0000107
RGD
Ensembl
PMID:24603492 GO_REF:0000107 NCBI chr 9:3,503,328...4,017,131
Ensembl chr 9:3,513,623...4,016,913
JBrowse link
clathrin coat of endocytic vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epn2 epsin 2 part_of IDA
IEA
GO_REF:0000002 InterPro
RGD
PMID:10567358 GO_REF:0000002, RGD:708327 NCBI chr10:46,197,785...46,259,673
Ensembl chr10:46,197,785...46,259,642
JBrowse link
clathrin coat of trans-Golgi network vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC105531.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Clta clathrin, light chain A part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:58,244,253...58,263,480
Ensembl chr 5:58,245,442...58,263,472
JBrowse link
G Cltb clathrin, light chain B part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:10,001,512...10,019,201
Ensembl chr17:10,001,513...10,019,169
JBrowse link
G Cltc clathrin heavy chain part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:71,517,661...71,574,591
Ensembl chr10:71,517,663...71,573,737
JBrowse link
G Dnm1l dynamin 1-like NOT|part_of IDA PMID:9472031 ParkinsonsUK-UCL PMID:9472031 RGD:11535088 NCBI chr11:84,581,216...84,632,382
Ensembl chr11:84,581,216...84,631,482
JBrowse link
G Synrg synergin, gamma part_of IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:10477754 PMID:21873635 RGD:631945, RGD:13792537 NCBI chr10:68,848,828...68,931,252 JBrowse link
clathrin vesicle coat term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clint1 clathrin interactor 1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:30,298,618...30,353,185
Ensembl chr10:30,298,704...30,353,063
JBrowse link
G Clta clathrin, light chain A part_of NAS
IBA
PMID:21873635 RGD
GO_Central
PMID:3563513 PMID:21873635 RGD:70686, RGD:13792537 NCBI chr 5:58,244,253...58,263,480
Ensembl chr 5:58,245,442...58,263,472
JBrowse link
G Cltb clathrin, light chain B part_of NAS
IBA
PMID:3563513
PMID:21873635
RGD
UniProt
GO_Central
PMID:3563513 PMID:3563513 PMID:21873635 RGD:70686, RGD:70686, RGD:13792537 NCBI chr17:10,001,512...10,019,201
Ensembl chr17:10,001,513...10,019,169
JBrowse link
G Enthd1 ENTH domain containing 1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:111,994,775...112,109,246
Ensembl chr 7:111,995,395...112,109,246
JBrowse link
G Epn1 Epsin 1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:68,742,491...68,760,507
Ensembl chr 1:68,742,789...68,758,874
JBrowse link
G Epn2 epsin 2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:46,197,785...46,259,673
Ensembl chr10:46,197,785...46,259,642
JBrowse link
G Epn3 epsin 3 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:79,438,978...79,449,516
Ensembl chr10:79,438,978...79,447,356
JBrowse link
G Necap1 NECAP endocytosis associated 1 part_of IBA
ISO
PMID:21873635
(MGI:3688370|PMID:14555962)
RGD PMID:14555962 PMID:21873635 MGI:3688370, RGD:13792537 NCBI chr 4:156,103,935...156,119,068
Ensembl chr 4:156,103,988...156,119,068
JBrowse link
G Necap2 NECAP endocytosis associated 2 part_of IBA
ISO
ISS
PMID:21873635
(MGI:3688370|PMID:14555962)
GO_REF:0000024
RGD
UniProt
PMID:14555962 PMID:21873635 GO_REF:0000024 MGI:3688370, RGD:13792537 NCBI chr 5:153,370,338...153,382,753
Ensembl chr 5:153,370,338...153,382,729
JBrowse link
clathrin-coated endocytic vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cemip cell migration inducing hyaluronidase 1 located_in ISO
ISS
(PMID:23509262)
GO_REF:0000024
RGD
UniProt
PMID:23509262 GO_REF:0000024 NCBI chr 1:137,906,921...138,062,430
Ensembl chr 1:137,908,920...138,062,415
JBrowse link
G Cltc clathrin heavy chain is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:71,517,661...71,574,591
Ensembl chr10:71,517,663...71,573,737
JBrowse link
G Cpne2 copine 2 NOT|located_in ISO (MGI:5634886|PMID:21087455) RGD PMID:21087455 MGI:5634886 NCBI chr19:10,434,277...10,472,146
Ensembl chr19:10,434,277...10,471,820
JBrowse link
G Cpne6 copine 6 located_in ISO (MGI:5634886|PMID:21087455) RGD PMID:21087455 MGI:5634886 NCBI chr15:28,998,293...29,005,044
Ensembl chr15:28,998,293...29,005,044
JBrowse link
G Ctla4 cytotoxic T-lymphocyte-associated protein 4 located_in ISO (PMID:15814706) RGD PMID:15814706 NCBI chr 9:62,318,874...62,325,978
Ensembl chr 9:62,319,312...62,324,963
JBrowse link
G Dnm2 dynamin 2 IDA RGD PMID:11925437 RGD:728683 NCBI chr 8:19,978,313...20,060,162
Ensembl chr 8:19,978,400...20,060,157
JBrowse link
G Inpp5f inositol polyphosphate-5-phosphatase F located_in
is_active_in
ISO
IBA
(PMID:25869669)
PMID:21873635
(MGI:5763358|PMID:25869668)
RGD PMID:25869668 PMID:25869669 PMID:21873635 MGI:5763358, RGD:13792537 NCBI chr 1:183,190,480...183,270,276
Ensembl chr 1:183,190,480...183,270,276
JBrowse link
G Lmbrd1 LMBR1 domain containing 1 part_of
located_in
ISS
ISO
GO_REF:0000024
(MGI:5543853|PMID:24078630)
UniProt
RGD
PMID:24078630 GO_REF:0000024 MGI:5543853 NCBI chr 9:27,096,387...27,178,095
Ensembl chr 9:27,096,297...27,178,090
JBrowse link
G Myo1e myosin IE colocalizes_with
located_in
ISO
IEA
ISS
(PMID:17257598)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:17257598 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:70,887,934...71,080,180
Ensembl chr 8:70,887,870...71,080,169
JBrowse link
G Myo6 myosin VI colocalizes_with ISO (PMID:11447109) RGD PMID:11447109 NCBI chr 8:81,087,157...81,242,022
Ensembl chr 8:81,087,139...81,239,292
JBrowse link
G Ngfr nerve growth factor receptor IDA during receptor recycling in response to NGF binding RGD PMID:17897318 RGD:5508756 NCBI chr10:80,515,287...80,533,518
Ensembl chr10:80,515,299...80,533,518
JBrowse link
G Rab35 RAB35, member RAS oncogene family located_in ISO (PMID:16950109) RGD PMID:16950109 NCBI chr12:40,967,102...40,981,183
Ensembl chr12:40,967,103...40,991,195
JBrowse link
G Slc5a7 solute carrier family 5 member 7 IDA RGD PMID:15953352 RGD:9999386 NCBI chr 9:7,595,440...7,626,258
Ensembl chr 9:7,595,444...7,626,258
JBrowse link
clathrin-coated endocytic vesicle membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clta clathrin, light chain A located_in TAS Reactome:R-RNO-177478
Reactome:R-RNO-182041
Reactome Reactome:R-RNO-177478 Reactome:R-RNO-182041 NCBI chr 5:58,244,253...58,263,480
Ensembl chr 5:58,245,442...58,263,472
JBrowse link
G Cltc clathrin heavy chain located_in TAS Reactome:R-RNO-177478
Reactome:R-RNO-182041
Reactome Reactome:R-RNO-177478 Reactome:R-RNO-182041 NCBI chr10:71,517,661...71,574,591
Ensembl chr10:71,517,663...71,573,737
JBrowse link
G Tyrp1 tyrosinase-related protein 1 located_in ISO (PMID:19841138) RGD PMID:19841138 NCBI chr 5:95,280,982...95,299,516
Ensembl chr 5:95,280,982...95,299,516
JBrowse link
clathrin-coated vesicle membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adcy8 adenylate cyclase 8 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 7:96,417,310...96,665,911
Ensembl chr 7:96,417,324...96,665,911
JBrowse link
G Ap1b1 adaptor related protein complex 1 subunit beta 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr14:79,879,482...79,930,778
Ensembl chr14:79,879,533...79,930,778
JBrowse link
G Ap1m1 adaptor related protein complex 1 subunit mu 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr16:17,586,886...17,602,410
Ensembl chr16:17,584,730...17,602,403
JBrowse link
G Ap1m2 adaptor related protein complex 1 subunit mu 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:19,838,579...19,856,560
Ensembl chr 8:19,838,580...19,856,482
JBrowse link
G Ap3b1 adaptor related protein complex 3 subunit beta 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:25,600,069...25,800,937
Ensembl chr 2:25,600,040...25,800,935
JBrowse link
G Ap3b2 adaptor related protein complex 3 subunit beta 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:135,412,580...135,445,191
Ensembl chr 1:135,412,580...135,445,191
JBrowse link
G Cemip cell migration inducing hyaluronidase 1 located_in ISS
ISO
GO_REF:0000024
(MGI:5545862|PMID:24251095)
UniProt
RGD
PMID:24251095 GO_REF:0000024 MGI:5545862 NCBI chr 1:137,906,921...138,062,430
Ensembl chr 1:137,908,920...138,062,415
JBrowse link
G Dab2 DAB adaptor protein 2 IDA RGD PMID:19000037 RGD:7243162 NCBI chr 2:55,514,692...55,567,476
Ensembl chr 2:55,514,700...55,567,476
JBrowse link
G Dbnl drebrin-like located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr14:80,666,115...80,681,155
Ensembl chr14:80,666,124...80,681,155
JBrowse link
G Dennd1a DENN domain containing 1A located_in ISO (MGI:3694831|PMID:17182770), (MGI:5751677|PMID:20159556) RGD PMID:17182770 PMID:20159556 MGI:3694831 MGI:5751677 NCBI chr 3:21,564,749...22,052,057
Ensembl chr 3:21,564,749...22,052,062
JBrowse link
G Reep6 receptor accessory protein 6 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 7:9,373,927...9,380,845
Ensembl chr 7:9,373,927...9,380,597
JBrowse link
G Syt11 synaptotagmin 11 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:174,206,032...174,232,540
Ensembl chr 2:174,206,191...174,231,964
JBrowse link
G Vamp3 vesicle-associated membrane protein 3 IDA RGD PMID:7573412 RGD:4892574 NCBI chr 5:161,498,109...161,508,704
Ensembl chr 5:161,498,109...161,508,751
JBrowse link
G Vti1a vesicle transport through interaction with t-SNAREs 1A located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:254,356,343...254,661,854
Ensembl chr 1:254,356,429...254,661,852
JBrowse link
trans-Golgi network transport vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07045071.1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Atp7a ATPase copper transporting alpha located_in ISO (PMID:9817923) RGD PMID:9817923 NCBI chr  X:71,094,144...71,201,550
Ensembl chr  X:71,094,202...71,198,354
JBrowse link
G Clrn1 clarin 1 located_in IEA
ISO
GO_REF:0000107
(MGI:4353969|PMID:19539019)
Ensembl
RGD
PMID:19539019 GO_REF:0000107 MGI:4353969 NCBI chr 2:143,084,030...143,130,948
Ensembl chr 2:143,084,030...143,130,948
JBrowse link
G Furin furin (paired basic amino acid cleaving enzyme) located_in ISO
IEA
(PMID:15078902)
GO_REF:0000107
RGD
Ensembl
PMID:15078902 GO_REF:0000107 NCBI chr 1:134,348,142...134,361,182
Ensembl chr 1:134,348,144...134,364,314
JBrowse link
G Gopc golgi associated PDZ and coiled-coil motif containing located_in
is_active_in
ISO
IBA
(PMID:11707463)
PMID:21873635
RGD PMID:11707463 PMID:21873635 RGD:13792537 NCBI chr20:31,727,617...31,776,928
Ensembl chr20:31,727,620...31,776,903
JBrowse link
G Igf2r insulin-like growth factor 2 receptor located_in ISO (PMID:15078902) RGD PMID:15078902 NCBI chr 1:47,979,109...48,067,501
Ensembl chr 1:47,979,109...48,067,501
JBrowse link
G Lyz2 lysozyme 2 IDA RGD PMID:9208328 RGD:1599861 NCBI chr 7:52,906,810...52,912,154
Ensembl chr 7:52,906,811...52,912,106
JBrowse link
G Rab13 RAB13, member RAS oncogene family is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:175,674,894...175,680,043
Ensembl chr 2:175,675,005...175,680,036
JBrowse link
G Rab14 RAB14, member RAS oncogene family located_in IDA PMID:15004230 UniProt PMID:15004230 RGD:8554557 NCBI chr 3:18,501,953...18,523,253
Ensembl chr 3:18,501,963...18,523,172
JBrowse link
G Rab27b RAB27B, member RAS oncogene family located_in ISO (PMID:19966785) RGD PMID:19966785 NCBI chr18:63,597,554...63,794,124
Ensembl chr18:63,600,937...63,757,180
JBrowse link
G Rab8a RAB8A, member RAS oncogene family located_in
is_active_in
ISO
IBA
(MGI:3722974|PMID:17765678)
PMID:21873635
RGD PMID:17765678 PMID:21873635 MGI:3722974, RGD:13792537 NCBI chr16:17,654,027...17,675,385
Ensembl chr16:17,654,034...17,675,678
JBrowse link
G Rab8b RAB8B, member RAS oncogene family is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:67,458,921...67,536,466
Ensembl chr 8:67,458,923...67,536,384
JBrowse link
G Slc2a4 solute carrier family 2 member 4 located_in ISO (MGI:3697008|PMID:17003038) RGD PMID:17003038 MGI:3697008 NCBI chr10:54,666,015...54,671,581
Ensembl chr10:54,666,015...54,671,565
JBrowse link
G Sort1 sortilin 1 located_in ISO (MGI:3040541|PMID:15078902) RGD PMID:15078902 MGI:3040541 NCBI chr 2:195,924,033...196,002,354
Ensembl chr 2:195,924,099...196,002,354
JBrowse link
G Spg21 SPG21 abhydrolase domain containing, maspardin located_in
is_active_in
ISO
IBA
ISS
IEA
(PMID:11113139)
PMID:21873635
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:11113139 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr 8:65,980,955...66,008,537
Ensembl chr 8:65,980,962...66,008,536
JBrowse link
G Steap2 STEAP2 metalloreductase located_in ISO (PMID:12095985) RGD PMID:12095985 NCBI chr 4:28,347,769...28,368,177
Ensembl chr 4:28,348,362...28,375,791
JBrowse link
G Tgoln2 trans-golgi network protein 2 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:104,663,356...104,671,208
Ensembl chr 4:104,663,353...104,671,164
JBrowse link
G Tmed10 transmembrane p24 trafficking protein 10 located_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 6:104,991,843...105,026,705
Ensembl chr 6:104,991,838...105,026,753
JBrowse link
trans-Golgi network transport vesicle membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrgn neurogranin IDA RGD PMID:8891262 RGD:9835422 NCBI chr 8:37,255,462...37,263,659
Ensembl chr 8:37,256,930...37,257,516
JBrowse link
G Rassf9 Ras association domain family member 9 located_in
is_active_in
IDA
IBA
IEA
ISO
PMID:9837933
PMID:21873635
GO_REF:0000107
(PMID:9837933)
Ensembl
RGD
PMID:9837933 PMID:9837933 PMID:21873635 GO_REF:0000107, RGD:633607, RGD:13792537 NCBI chr 7:37,599,720...37,631,553
Ensembl chr 7:37,599,720...37,635,245
JBrowse link
Weibel-Palade body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cracr2a calcium release activated channel regulator 2A located_in ISO (PMID:31092558) RGD PMID:31092558 NCBI chr 4:160,428,987...160,517,427
Ensembl chr 4:160,408,077...160,518,107
JBrowse link
G Ece1 endothelin converting enzyme 1 located_in ISO
IEA
(PMID:9710124)
GO_REF:0000107
RGD
Ensembl
PMID:9710124 GO_REF:0000107 NCBI chr 5:150,077,679...150,179,375
Ensembl chr 5:150,077,644...150,179,371
JBrowse link
G Edn1 endothelin 1 IDA RGD PMID:10903535 RGD:8662311 NCBI chr17:22,454,924...22,460,812
Ensembl chr17:22,454,420...22,460,885
JBrowse link
G Rab27a RAB27A, member RAS oncogene family located_in IDA PMID:22899725 UniProt PMID:22899725 RGD:10047177 NCBI chr 8:73,782,730...73,836,630
Ensembl chr 8:73,782,694...73,847,829
JBrowse link
G Unc13d unc-13 homolog D located_in ISO
IEA
(PMID:22899725)
GO_REF:0000107
RGD
Ensembl
PMID:22899725 GO_REF:0000107 NCBI chr10:101,296,755...101,311,513
Ensembl chr10:101,296,776...101,311,687
JBrowse link
G Vwf von Willebrand factor located_in ISO
IEA
(PMID:3082891), (PMID:3087627)
GO_REF:0000107
RGD
Ensembl
PMID:3082891 PMID:3087627 GO_REF:0000107 NCBI chr 4:158,360,152...158,491,539
Ensembl chr 4:158,360,152...158,491,539
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19895
    cellular anatomical entity 19598
      cytoplasm 11290
        cytoplasmic vesicle 1915
          coated vesicle 216
            clathrin-coated vesicle 124
              Weibel-Palade body 6
              clathrin-coated endocytic vesicle + 26
              clathrin-coated vesicle membrane + 46
              clathrin-sculpted vesicle + 0
              trans-Golgi network transport vesicle + 33
Path 2
Term Annotations click to browse term
  cellular_component 19895
    cellular anatomical entity 19598
      organelle 13016
        membrane-bounded organelle 11630
          vesicle 2078
            intracellular vesicle 1919
              cytoplasmic vesicle 1915
                coated vesicle 216
                  clathrin-coated vesicle 124
                    Weibel-Palade body 6
                    clathrin-coated endocytic vesicle + 26
                    clathrin-coated vesicle membrane + 46
                    clathrin-sculpted vesicle + 0
                    trans-Golgi network transport vesicle + 33
paths to the root