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ONTOLOGY REPORT - ANNOTATIONS

Term:proximal/distal pattern formation
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Accession:GO:0009954 term browser browse the term
Definition:The regionalization process in which specific areas of cell differentiation are determined along a proximal/distal axis. The proximal/distal axis is defined by a line that runs from main body (proximal end) of an organism outward (distal end).
Synonyms:narrow_synonym: proximal/distal pattern specification


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proximal/distal pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 acts_upstream_of_or_within IMP (PMID:14623241), (PMID:15069081) MGI PMID:14623241 PMID:15069081 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525 		JBrowse link
G Apc APC, WNT signaling pathway regulator acts_upstream_of_or_within IMP (PMID:16887818) MGI PMID:16887818 NCBI chr18:34,353,350...34,455,243
Ensembl chr18:34,353,977...34,455,605 		JBrowse link
G Chsy1 chondroitin sulfate synthase 1 acts_upstream_of_or_within IMP (PMID:22280990) MGI PMID:22280990 NCBI chr 7:65,759,240...65,823,546
Ensembl chr 7:65,759,263...65,823,546 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IMP (PMID:12885771) MGI PMID:12885771 NCBI chr 9:120,762,466...120,789,573
Ensembl chr 9:120,758,282...120,789,573 		JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 acts_upstream_of_or_within IMP (PMID:15030763) MGI PMID:15030763 NCBI chr 6:84,548,396...84,570,890
Ensembl chr 6:84,548,396...84,570,890 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in IMP (MGI:5426345|PMID:22529374) UniProt PMID:22529374 MGI:5426345 NCBI chr17:15,587,616...15,597,275
Ensembl chr17:15,587,616...15,597,134 		JBrowse link
G Dlx1 distal-less homeobox 1 acts_upstream_of_or_within IGI
IMP		 (PMID:9187081) MGI PMID:9187081 NCBI chr 2:71,358,457...71,364,325
Ensembl chr 2:71,358,457...71,364,325 		JBrowse link
G Dlx2 distal-less homeobox 2 acts_upstream_of_or_within IGI
IMP		 (PMID:9187081) MGI PMID:9187081 NCBI chr 2:71,373,752...71,377,095
Ensembl chr 2:71,373,752...71,377,098 		JBrowse link
G En1 engrailed 1 acts_upstream_of_or_within IMP (PMID:8684466), (PMID:9362463) MGI PMID:8684466 PMID:9362463 NCBI chr 1:120,530,246...120,535,719
Ensembl chr 1:120,530,147...120,535,721 		JBrowse link
G Gli1 GLI-Kruppel family member GLI1 acts_upstream_of_or_within IGI (PMID:16342201) MGI PMID:16342201 NCBI chr10:127,165,751...127,177,448
Ensembl chr10:127,165,751...127,177,843 		JBrowse link
G Gli2 GLI-Kruppel family member GLI2 acts_upstream_of_or_within IGI (PMID:16342201) MGI PMID:16342201 NCBI chr 1:118,761,791...118,987,578
Ensembl chr 1:118,761,862...118,981,349 		JBrowse link
G Gli3 GLI-Kruppel family member GLI3 acts_upstream_of_or_within IMP
IGI		 (PMID:16342201) MGI PMID:16342201 NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist acts_upstream_of_or_within IMP (PMID:12808456) MGI PMID:12808456 NCBI chr 2:113,579,020...113,588,993
Ensembl chr 2:113,576,509...113,588,991 		JBrowse link
G Hoxa10 homeobox A10 acts_upstream_of_or_within IGI (PMID:12869760) MGI PMID:12869760 NCBI chr 6:52,208,177...52,217,658
Ensembl chr 6:52,208,177...52,217,834 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within IGI (PMID:12869760) MGI PMID:12869760 NCBI chr 6:52,219,086...52,222,784
Ensembl chr 6:52,219,086...52,222,790 		JBrowse link
G Hoxa9 homeobox A9 acts_upstream_of_or_within
involved_in		 IGI
IBA		 (PMID:8625797) MGI
GO_Central		 PMID:8625797 GO_REF:0000033 NCBI chr 6:52,200,077...52,203,169
Ensembl chr 6:52,200,080...52,208,069 		JBrowse link
G Hoxb9 homeobox B9 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:96,162,156...96,167,421
Ensembl chr11:96,162,283...96,167,421 		JBrowse link
G Hoxc10 homeobox C10 acts_upstream_of_or_within IGI (PMID:12869760) MGI PMID:12869760 NCBI chr15:102,875,231...102,880,333
Ensembl chr15:102,875,231...102,880,328 		JBrowse link
G Hoxc11 homeobox C11 acts_upstream_of_or_within IGI (PMID:12869760) MGI PMID:12869760 NCBI chr15:102,862,961...102,865,136
Ensembl chr15:102,862,862...102,866,143 		JBrowse link
G Hoxc9 homeobox C9 involved_in IBA GO_Central GO_REF:0000033 NCBI chr15:102,885,467...102,893,324
Ensembl chr15:102,884,874...102,893,531 		JBrowse link
G Hoxd10 homeobox D10 acts_upstream_of_or_within IGI (PMID:12869760) MGI PMID:12869760 NCBI chr 2:74,514,617...74,525,450
Ensembl chr 2:74,522,268...74,525,449 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within IGI (PMID:12869760) MGI PMID:12869760 NCBI chr 2:74,509,902...74,517,360
Ensembl chr 2:74,509,901...74,517,360 		JBrowse link
G Hoxd9 homeobox D9 acts_upstream_of_or_within
involved_in		 IMP
IBA
IGI		 (PMID:8625797) MGI
GO_Central		 PMID:8625797 GO_REF:0000033 NCBI chr 2:74,528,107...74,530,552
Ensembl chr 2:74,528,071...74,530,552 		JBrowse link
G Lrp4 low density lipoprotein receptor-related protein 4 acts_upstream_of_or_within IMP (PMID:17119023) MGI PMID:17119023 NCBI chr 2:91,287,794...91,344,246
Ensembl chr 2:91,287,856...91,344,124 		JBrowse link
G Pbx1 pre B cell leukemia homeobox 1 acts_upstream_of_or_within IGI
IMP		 (PMID:16672333)
(PMID:11566859)		 MGI PMID:11566859 PMID:16672333 NCBI chr 1:167,946,933...168,259,898
Ensembl chr 1:167,946,933...168,259,839 		JBrowse link
G Pbx2 pre B cell leukemia homeobox 2 acts_upstream_of_or_within IGI (PMID:16672333) MGI PMID:16672333 NCBI chr17:34,811,233...34,816,374
Ensembl chr17:34,810,240...34,816,374 		JBrowse link
G Sp8 trans-acting transcription factor 8 acts_upstream_of_or_within IMP (PMID:14597661) MGI PMID:14597661 NCBI chr12:118,809,968...118,816,313
Ensembl chr12:118,810,064...118,816,311 		JBrowse link
G Trp63 transformation related protein 63 acts_upstream_of_or_within IMP (PMID:10227293) MGI PMID:10227293 NCBI chr16:25,502,513...25,710,842
Ensembl chr16:25,502,513...25,710,852 		JBrowse link
lung proximal/distal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IDA (PMID:15531758) MGI PMID:15531758 NCBI chr13:118,851,199...118,928,651
Ensembl chr13:118,806,327...118,928,651 		JBrowse link
polarity specification of proximal/distal axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal growth differentiation factor acts_upstream_of_or_within IMP (PMID:14511481) MGI PMID:14511481 NCBI chr10:61,253,751...61,261,117
Ensembl chr10:61,253,751...61,261,117 		JBrowse link
G Wnt8a wingless-type MMTV integration site family, member 8A acts_upstream_of_or_within IMP (PMID:16256739) MGI PMID:16256739 NCBI chr18:34,675,380...34,681,114
Ensembl chr18:34,675,366...34,681,326 		JBrowse link
proximal/distal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Six3 sine oculis-related homeobox 3 involved_in IDA (MGI:5582181|PMID:12163408) UniProt PMID:12163408 MGI:5582181 NCBI chr17:85,921,036...85,933,619
Ensembl chr17:85,921,036...85,936,730 		JBrowse link
proximal/distal pattern formation involved in metanephric nephron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irx1 Iroquois homeobox 1 involved_in IEP (MGI:3758158|PMID:17875669) UniProt PMID:17875669 MGI:3758158 NCBI chr13:72,106,351...72,111,842
Ensembl chr13:72,106,040...72,111,842 		JBrowse link
G Irx2 Iroquois homeobox 2 involved_in IEP (MGI:3758158|PMID:17875669) UniProt PMID:17875669 MGI:3758158 NCBI chr13:72,771,463...72,782,315
Ensembl chr13:72,776,939...72,782,317 		JBrowse link
proximal/distal pattern formation involved in nephron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irx3 Iroquois related homeobox 3 involved_in IEP (MGI:3758158|PMID:17875669) UniProt PMID:17875669 MGI:3758158 NCBI chr 8:92,525,139...92,528,282
Ensembl chr 8:92,525,153...92,528,695 		JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in IMP (MGI:3697513|PMID:16790474) UniProt PMID:16790474 MGI:3697513 NCBI chr12:9,624,442...9,631,500
Ensembl chr12:9,620,116...9,631,500 		JBrowse link
specification of loop of Henle identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes5 hes family bHLH transcription factor 5 involved_in IEP (MGI:3576186|PMID:15821257) UniProt PMID:15821257 MGI:3576186 NCBI chr 4:155,042,358...155,046,829
Ensembl chr 4:155,045,380...155,046,828 		JBrowse link
G Irx1 Iroquois homeobox 1 involved_in IEP (MGI:3758158|PMID:17875669) UniProt PMID:17875669 MGI:3758158 NCBI chr13:72,106,351...72,111,842
Ensembl chr13:72,106,040...72,111,842 		JBrowse link
G Irx2 Iroquois homeobox 2 involved_in IEP (MGI:3758158|PMID:17875669) UniProt PMID:17875669 MGI:3758158 NCBI chr13:72,771,463...72,782,315
Ensembl chr13:72,776,939...72,782,317 		JBrowse link
G Irx3 Iroquois related homeobox 3 involved_in IEP (MGI:3758158|PMID:17875669) UniProt PMID:17875669 MGI:3758158 NCBI chr 8:92,525,139...92,528,282
Ensembl chr 8:92,525,153...92,528,695 		JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in IMP (MGI:3697513|PMID:16790474) UniProt PMID:16790474 MGI:3697513 NCBI chr12:9,624,442...9,631,500
Ensembl chr12:9,620,116...9,631,500 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28573
    multicellular organismal process 8916
      pattern specification process 496
        regionalization 451
          proximal/distal pattern formation 37
            leaf proximal/distal pattern formation 0
            maintenance of imaginal disc-derived wing hair orientation 0
            proximal/distal axis specification + 4
            proximal/distal pattern formation involved in nephron development + 5
            proximal/distal pattern formation, imaginal disc + 0
Path 2
Term Annotations click to browse term
  biological_process 28573
    developmental process 7376
      anatomical structure development 6848
        multicellular organism development 5441
          pattern specification process 496
            regionalization 451
              proximal/distal pattern formation 37
                leaf proximal/distal pattern formation 0
                maintenance of imaginal disc-derived wing hair orientation 0
                proximal/distal axis specification + 4
                proximal/distal pattern formation involved in nephron development + 5
                proximal/distal pattern formation, imaginal disc + 0
paths to the root