Gli1 (GLI-Kruppel family member GLI1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Gli1 (GLI-Kruppel family member GLI1) Mus musculus
Analyze
Symbol: Gli1
Name: GLI-Kruppel family member GLI1
RGD ID: 1550011
MGI Page MGI
Description: Enables several functions, including DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and microtubule binding activity. Involved in regulation of osteoblast differentiation. Acts upstream of or within several processes, including central nervous system development; liver regeneration; and regionalization. Located in axoneme and nucleus. Is expressed in several structures, including alimentary system; central nervous system; embryo mesenchyme; long bone; and sensory organ. Human ortholog(s) of this gene implicated in gallbladder cancer. Orthologous to human GLI1 (GLI family zinc finger 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AV235269; glioma-associated oncogene homolog; Zfp; Zfp-; Zfp-5; Zfp5; zinc finger protein 5; zinc finger protein GLI1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910127,165,751 - 127,177,448 (-)NCBIGRCm39mm39
GRCm39 Ensembl10127,165,751 - 127,177,843 (-)Ensembl
GRCm3810127,329,882 - 127,341,579 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10127,329,882 - 127,341,974 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710126,766,938 - 126,778,635 (-)NCBIGRCm37mm9NCBIm37
MGSCv3610126,732,834 - 126,744,528 (-)NCBImm8
Celera10129,722,485 - 129,734,187 (-)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1074.5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-5alpha-androstan-3-one  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-butan-2-yl-4-[4-[4-[4-[[2-(2,4-dichlorophenyl)-2-(1,2,4-triazol-1-ylmethyl)-1,3-dioxolan-4-yl]methoxy]phenyl]-1-piperazinyl]phenyl]-1,2,4-triazol-3-one  (EXP,ISO)
3',5'-cyclic AMP  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
5-aza-2'-deoxycytidine  (EXP,ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
Ac-Ser-Asp-Lys-Pro-OH  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (EXP,ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
apigenin  (EXP)
Aroclor 1254  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (EXP)
arsenous acid  (ISO)
aspartame  (ISO)
baicalein  (EXP)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
cannabidiol  (ISO)
captopril  (ISO)
CGP 52608  (ISO)
chromium(6+)  (EXP)
cisplatin  (ISO)
clothianidin  (ISO)
colforsin daropate hydrochloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (ISO)
curcumin  (EXP,ISO)
Cyclopamine  (EXP,ISO)
cyclosporin A  (ISO)
D-glucose  (EXP,ISO)
DDE  (ISO)
dextran sulfate  (EXP)
diarsenic trioxide  (ISO)
dibenzo[a,l]pyrene  (EXP)
dibutyl phthalate  (EXP,ISO)
dichromium trioxide  (ISO)
diethylstilbestrol  (EXP)
dimethylarsinic acid  (EXP)
dioxygen  (EXP)
embelin  (EXP,ISO)
ethanol  (EXP)
fulvestrant  (ISO)
genistein  (EXP)
glucose  (EXP,ISO)
goralatide  (ISO)
hydrogen peroxide  (ISO)
ipriflavone  (EXP,ISO)
itraconazole  (EXP,ISO)
L-ascorbic acid  (ISO)
lead diacetate  (ISO)
lipopolysaccharide  (ISO)
LY294002  (ISO)
melittin  (ISO)
methamphetamine  (ISO)
methylarsonic acid  (EXP)
N-ethyl-N-nitrosourea  (EXP)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
N-nitrosodiethylamine  (EXP)
ochratoxin A  (ISO)
paracetamol  (ISO)
paraquat  (EXP)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
piperonyl butoxide  (EXP,ISO)
potassium dichromate  (EXP)
progesterone  (EXP)
quercetin  (EXP,ISO)
quercetin 3-O-beta-D-galactopyranoside  (ISO)
quinacrine  (ISO)
resveratrol  (EXP,ISO)
Salinomycin  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (EXP,ISO)
sodium fluoride  (ISO)
sonidegib  (EXP)
tamoxifen  (EXP)
tetrachloromethane  (EXP)
tetramethylpyrazine  (EXP)
theaflavin  (EXP)
tofacitinib  (ISO)
tolnaftate  (EXP,ISO)
trans-piceid  (EXP)
trichloroethene  (ISO)
triptonide  (EXP,ISO)
valproic acid  (ISO)
vincristine  (ISO)
vismodegib  (EXP,ISO)
zinc oxide  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
axoneme  (IDA)
cilium  (IDA)
cytoplasm  (IDA,IGI,ISO)
cytosol  (ISO)
GLI-SUFU complex  (ISO)
nucleoplasm  (ISO)
nucleus  (IBA,IDA,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal cell proliferation  (IAGP)
abnormal cerebellar foliation  (IAGP)
abnormal cerebellar granule layer morphology  (IAGP)
abnormal cerebellar lobule formation  (IAGP)
abnormal cerebellum development  (IAGP)
abnormal cerebellum external granule cell layer morphology  (IAGP)
abnormal cerebellum morphology  (IAGP)
abnormal digestive system morphology  (IAGP)
abnormal digit morphology  (IAGP)
abnormal external female genitalia morphology  (IAGP)
abnormal external male genitalia morphology  (IAGP)
abnormal floor plate morphology  (IAGP)
abnormal foreskin morphology  (IAGP)
abnormal gait  (IAGP)
abnormal left lung morphology  (IAGP)
abnormal lung morphology  (IAGP)
abnormal motor neuron morphology  (IAGP)
abnormal neuron differentiation  (IAGP)
abnormal neuronal precursor cell number  (IAGP)
abnormal neuronal precursor proliferation  (IAGP)
abnormal notochord morphology  (IAGP)
abnormal reproductive system development  (IAGP)
abnormal right lung accessory lobe morphology  (IAGP)
abnormal right lung cranial lobe morphology  (IAGP)
abnormal spinal cord morphology  (IAGP)
abnormal telencephalon morphology  (IAGP)
abnormal tooth development  (IAGP)
abnormal ventral interneuron 3 morphology  (IAGP)
abnormal ventral interneuron morphology  (IAGP)
absent floor plate  (IAGP)
absent pituitary gland  (IAGP)
cryptorchism  (IAGP)
decreased body size  (IAGP)
decreased motor neuron number  (IAGP)
embryonic lethality during organogenesis, complete penetrance  (IAGP)
impaired lung lobe morphogenesis  (IAGP)
impaired righting response  (IAGP)
increased medulloblastoma incidence  (IAGP)
lethality throughout fetal growth and development, incomplete penetrance  (IAGP)
neonatal lethality, incomplete penetrance  (IAGP)
no abnormal phenotype detected  (IAGP)
perinatal lethality, complete penetrance  (IAGP)
persistence of notochord tissue  (IAGP)
polydactyly  (IAGP)
premature death  (IAGP)
small lung  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Dynamic changes of Sonic Hedgehog signaling pathway in gastric mucosa of rats with MNNG-induced gastric precancerous lesions. Cai D, etal., J Cell Physiol. 2019 Jul;234(7):10827-10834. doi: 10.1002/jcp.27908. Epub 2018 Dec 7.
2. Hedgehog signaling update. Cohen MM, Am J Med Genet A. 2010 Aug;152A(8):1875-914. doi: 10.1002/ajmg.a.32909.
3. SCP2-mediated cholesterol membrane trafficking promotes the growth of pituitary adenomas via Hedgehog signaling activation. Ding X, etal., J Exp Clin Cancer Res. 2019 Sep 13;38(1):404. doi: 10.1186/s13046-019-1411-9.
4. Core signaling pathways in human pancreatic cancers revealed by global genomic analyses. Jones S, etal., Science. 2008 Sep 26;321(5897):1801-6. Epub 2008 Sep 4.
5. Hedgehog signaling and therapeutics in pancreatic cancer. Kelleher FC Carcinogenesis. 2011 Apr;32(4):445-51. Epub 2010 Dec 24.
6. Expression of hedgehog signal pathway in articular cartilage is associated with the severity of cartilage damage in rats with adjuvant-induced arthritis. Li R, etal., J Inflamm (Lond). 2015 Mar 28;12:24. doi: 10.1186/s12950-015-0072-5. eCollection 2015.
7. The role of the sonic hedgehog signaling pathway in early brain injury after experimental subarachnoid hemorrhage in rats. Li T, etal., Neurosci Lett. 2013 Sep 27;552:81-6. doi: 10.1016/j.neulet.2013.07.042. Epub 2013 Aug 7.
8. Sonic Hedgehog Signaling Affected by Promoter Hypermethylation Induces Aberrant Gli2 Expression in Spina Bifida. Lu XL, etal., Mol Neurobiol. 2016 Oct;53(8):5413-24. doi: 10.1007/s12035-015-9447-0. Epub 2015 Oct 7.
9. MGDs mouse GO annotations MGD data from the GO Consortium
10. MGD IEA MGD IEA
11. Frequent deregulations in the hedgehog signaling network and cross-talks with the epidermal growth factor receptor pathway involved in cancer progression and targeted therapies. Mimeault M and Batra SK, Pharmacol Rev. 2010 Sep;62(3):497-524.
12. PTC gene mutations and expression of SHH, PTC, SMO, and GLI-1 in odontogenic keratocysts. Ohki K, etal., Int J Oral Maxillofac Surg. 2004 Sep;33(6):584-92.
13. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
14. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
15. Mouse MP Annotation Import Pipeline RGD automated import pipeline
16. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
17. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
18. [Expression of Smo protein and the downstream transcription factor Gli1 protein in Sonic hedgehog signal transduction pathway in gastric carcinoma]. Rong ZX, etal., Nan Fang Yi Ke Da Xue Xue Bao. 2006 Dec;26(12):1728-31.
19. Multiple mouse chromosomal loci for dynein-based motility. Vaughan KT, etal., Genomics 1996 Aug 15;36(1):29-38.
20. gli, a zinc finger transcription factor and oncogene, is expressed during normal mouse development. Walterhouse D, etal., Dev Dyn 1993 Feb;196(2):91-102.
21. Expression and clinical significance of hedgehog signaling pathway related components in colorectal cancer. Wang H, etal., Asian Pac J Cancer Prev. 2012;13(5):2319-24. doi: 10.7314/apjcp.2012.13.5.2319.
22. Sonic hedgehog expression in a rat model of chronic pancreatitis. Wang LW, etal., World J Gastroenterol. 2014 Apr 28;20(16):4712-7. doi: 10.3748/wjg.v20.i16.4712.
23. Paradoxical dysregulation of the neural stem cell pathway sonic hedgehog-Gli1 in autoimmune encephalomyelitis and multiple sclerosis. Wang Y, etal., Ann Neurol. 2008 Oct;64(4):417-27. doi: 10.1002/ana.21457.
24. Neuroprotective effect of up-regulated Sonic hedgehog in retinal ganglion cells following chronic ocular hypertension. Wu J, etal., Invest Ophthalmol Vis Sci. 2010 Jan 13.
25. Association of Wnt signaling pathway genetic variants in gallbladder cancer susceptibility and survival. Yadav A, etal., Tumour Biol. 2016 Jun;37(6):8083-95. doi: 10.1007/s13277-015-4728-9. Epub 2015 Dec 29.
26. [Expression of sonic hedgehog signaling pathw ay and its inhibition by cyclopamine in rat liver with chronic fluorosis]. Zhao L, etal., Zhonghua Bing Li Xue Za Zhi. 2014 Dec;43(12):814-9.
Additional References at PubMed
PMID:1698554   PMID:1768617   PMID:1797234   PMID:1924386   PMID:1975791   PMID:1981053   PMID:2832761   PMID:2850480   PMID:5806166   PMID:7558008   PMID:7588068   PMID:7849395  
PMID:7873878   PMID:8034307   PMID:8150204   PMID:8288218   PMID:8387379   PMID:8570653   PMID:8575294   PMID:8589516   PMID:8787761   PMID:8814290   PMID:8838799   PMID:8884266  
PMID:9006072   PMID:9027508   PMID:9070650   PMID:9118802   PMID:9126479   PMID:9152005   PMID:9178901   PMID:9216996   PMID:9247260   PMID:9262482   PMID:9268579   PMID:9344654  
PMID:9425131   PMID:9438426   PMID:9486541   PMID:9524201   PMID:9585239   PMID:9636069   PMID:9655799   PMID:9655803   PMID:9671585   PMID:9768360   PMID:9768363   PMID:9769173  
PMID:9834182   PMID:9882493   PMID:9918099   PMID:9988217   PMID:10027293   PMID:10075717   PMID:10096602   PMID:10340755   PMID:10349636   PMID:10375501   PMID:10385121   PMID:10395791  
PMID:10409502   PMID:10433919   PMID:10465785   PMID:10495271   PMID:10512189   PMID:10516314   PMID:10529434   PMID:10531011   PMID:10534616   PMID:10625551   PMID:10631181   PMID:10725236  
PMID:10821773   PMID:10835630   PMID:10884376   PMID:10920228   PMID:10981962   PMID:11032829   PMID:11042159   PMID:11044393   PMID:11076861   PMID:11092553   PMID:11118883   PMID:11217851  
PMID:11311154   PMID:11359461   PMID:11389830   PMID:11472847   PMID:11472848   PMID:11476582   PMID:11485934   PMID:11544199   PMID:11668681   PMID:11684660   PMID:11717126   PMID:11748145  
PMID:11748151   PMID:11748155   PMID:11784021   PMID:11821712   PMID:11850178   PMID:11943666   PMID:12015971   PMID:12049724   PMID:12086465   PMID:12138125   PMID:12142027   PMID:12163410  
PMID:12195432   PMID:12198547   PMID:12215652   PMID:12221011   PMID:12223417   PMID:12231626   PMID:12351188   PMID:12361967   PMID:12385751   PMID:12397105   PMID:12399319   PMID:12403705  
PMID:12421714   PMID:12435627   PMID:12438220   PMID:12441288   PMID:12455637   PMID:12466851   PMID:12477932   PMID:12533516   PMID:12629553   PMID:12648487   PMID:12701101   PMID:12724834  
PMID:12752768   PMID:12756179   PMID:12812795   PMID:12917290   PMID:12971894   PMID:14555646   PMID:14567981   PMID:14568100   PMID:14597572   PMID:14602680   PMID:14610273   PMID:14645126  
PMID:14681189   PMID:14687547   PMID:14695375   PMID:14723851   PMID:14745966   PMID:14973295   PMID:14973297   PMID:15005800   PMID:15075292   PMID:15105374   PMID:15136151   PMID:15151988  
PMID:15215207   PMID:15280216   PMID:15294143   PMID:15315762   PMID:15315763   PMID:15337776   PMID:15371303   PMID:15496441   PMID:15581864   PMID:15604097   PMID:15604102   PMID:15614767  
PMID:15618518   PMID:15647317   PMID:15668330   PMID:15736266   PMID:15793308   PMID:15797020   PMID:15806168   PMID:15811134   PMID:15841179   PMID:15906375   PMID:15930098   PMID:15936751  
PMID:16039644   PMID:16054035   PMID:16055717   PMID:16141072   PMID:16141073   PMID:16168717   PMID:16169547   PMID:16207730   PMID:16208373   PMID:16221724   PMID:16236765   PMID:16247775  
PMID:16254602   PMID:16284117   PMID:16311594   PMID:16316410   PMID:16342201   PMID:16357211   PMID:16368932   PMID:16396903   PMID:16421275   PMID:16459298   PMID:16489008   PMID:16540513  
PMID:16543460   PMID:16571352   PMID:16571625   PMID:16571630   PMID:16602821   PMID:16611729   PMID:16611981   PMID:16647303   PMID:16647304   PMID:16651659   PMID:16672333   PMID:16707121  
PMID:16712836   PMID:16738056   PMID:16791844   PMID:16813524   PMID:16818445   PMID:16818446   PMID:16849540   PMID:16854408   PMID:16855389   PMID:16887337   PMID:16908629   PMID:16914490  
PMID:16914743   PMID:16916379   PMID:16936075   PMID:16943197   PMID:16958114   PMID:17026983   PMID:17035233   PMID:17115028   PMID:17126317   PMID:17151017   PMID:17157160   PMID:17166921  
PMID:17191253   PMID:17199044   PMID:17202190   PMID:17222543   PMID:17257418   PMID:17266131   PMID:17321515   PMID:17392427   PMID:17395647   PMID:17397822   PMID:17400206   PMID:17442700  
PMID:17490411   PMID:17504940   PMID:17525797   PMID:17537963   PMID:17537964   PMID:17631878   PMID:17638910   PMID:17660199   PMID:17664423   PMID:17687036   PMID:17698054   PMID:17714700  
PMID:17804638   PMID:17826177   PMID:17901397   PMID:17904116   PMID:17928300   PMID:17928865   PMID:18039967   PMID:18083924   PMID:18084326   PMID:18160632   PMID:18218620   PMID:18262513  
PMID:18272352   PMID:18276799   PMID:18287559   PMID:18330926   PMID:18353302   PMID:18358466   PMID:18367557   PMID:18417110   PMID:18429041   PMID:18434416   PMID:18449196   PMID:18463247  
PMID:18477453   PMID:18480159   PMID:18480165   PMID:18582859   PMID:18617531   PMID:18625210   PMID:18632939   PMID:18676816   PMID:18691547   PMID:18692037   PMID:18692041   PMID:18694563  
PMID:18710724   PMID:18728187   PMID:18799693   PMID:18827223   PMID:18832070   PMID:18842815   PMID:18927156   PMID:18929642   PMID:18930042   PMID:18953410   PMID:18990706   PMID:19004860  
PMID:19020777   PMID:19030180   PMID:19036983   PMID:19049965   PMID:19071955   PMID:19103193   PMID:19103804   PMID:19111533   PMID:19116665   PMID:19124651   PMID:19136624   PMID:19149881  
PMID:19165927   PMID:19168680   PMID:19211681   PMID:19214186   PMID:19223390   PMID:19229034   PMID:19233133   PMID:19252479   PMID:19268447   PMID:19270025   PMID:19273610   PMID:19282366  
PMID:19286674   PMID:19287388   PMID:19298856   PMID:19299468   PMID:19304889   PMID:19304890   PMID:19357274   PMID:19369393   PMID:19386268   PMID:19386269   PMID:19386638   PMID:19394325  
PMID:19445942   PMID:19458072   PMID:19474320   PMID:19474326   PMID:19487286   PMID:19497283   PMID:19536807   PMID:19542358   PMID:19549984   PMID:19559697   PMID:19570846   PMID:19570847  
PMID:19574535   PMID:19590577   PMID:19592253   PMID:19632216   PMID:19666558   PMID:19684112   PMID:19776033   PMID:19783740   PMID:19815519   PMID:19842175   PMID:19854269   PMID:19877272  
PMID:19877275   PMID:19879143   PMID:19906842   PMID:19906857   PMID:19906864   PMID:19913006   PMID:19934017   PMID:19955443   PMID:20008041   PMID:20013655   PMID:20034104   PMID:20059953  
PMID:20067783   PMID:20081193   PMID:20081843   PMID:20106874   PMID:20107231   PMID:20118198   PMID:20150232   PMID:20152829   PMID:20159447   PMID:20159594   PMID:20185815   PMID:20206616  
PMID:20212115   PMID:20339091   PMID:20386744   PMID:20400693   PMID:20418906   PMID:20430747   PMID:20433698   PMID:20478998   PMID:20503377   PMID:20507551   PMID:20516201   PMID:20532162  
PMID:20576618   PMID:20581802   PMID:20581804   PMID:20637749   PMID:20660756   PMID:20732316   PMID:20826535   PMID:20920500   PMID:20935514   PMID:20943901   PMID:20943929   PMID:20950430  
PMID:20962855   PMID:20969845   PMID:20978073   PMID:21045211   PMID:21076395   PMID:21093585   PMID:21098571   PMID:21129374   PMID:21138975   PMID:21143927   PMID:21183473   PMID:21205797  
PMID:21209331   PMID:21209421   PMID:21209912   PMID:21247964   PMID:21256921   PMID:21267068   PMID:21283718   PMID:21289193   PMID:21292980   PMID:21303853   PMID:21307096   PMID:21337666  
PMID:21364421   PMID:21368213   PMID:21384471   PMID:21385574   PMID:21389986   PMID:21429982   PMID:21451052   PMID:21465616   PMID:21471156   PMID:21490064   PMID:21502507   PMID:21515253  
PMID:21539826   PMID:21549329   PMID:21586556   PMID:21600200   PMID:21623382   PMID:21646478   PMID:21653639   PMID:21658586   PMID:21664576   PMID:21664577   PMID:21674568   PMID:21689430  
PMID:21693512   PMID:21713771   PMID:21725307   PMID:21731673   PMID:21750036   PMID:21775418   PMID:21791285   PMID:21795281   PMID:21795282   PMID:21803035   PMID:21816948   PMID:21820362  
PMID:21821669   PMID:21831920   PMID:21873635   PMID:21911092   PMID:21912524   PMID:21933656   PMID:21935430   PMID:21937600   PMID:21939397   PMID:21976438   PMID:22022457   PMID:22031887  
PMID:22038040   PMID:22178118   PMID:22182519   PMID:22190639   PMID:22228095   PMID:22232209   PMID:22265416   PMID:22275192   PMID:22275805   PMID:22280990   PMID:22281533   PMID:22330336  
PMID:22340494   PMID:22342522   PMID:22342532   PMID:22344222   PMID:22354480   PMID:22383895   PMID:22395741   PMID:22402963   PMID:22421044   PMID:22438573   PMID:22465667   PMID:22479201  
PMID:22493246   PMID:22493482   PMID:22537490   PMID:22629441   PMID:22698544   PMID:22860096   PMID:22869526   PMID:22889265   PMID:22898775   PMID:22935613   PMID:22988430   PMID:22992748  
PMID:22995554   PMID:23019366   PMID:23023706   PMID:23026747   PMID:23028455   PMID:23034632   PMID:23071453   PMID:23077214   PMID:23110168   PMID:23123965   PMID:23201023   PMID:23201751  
PMID:23213437   PMID:23238718   PMID:23249739   PMID:23257686   PMID:23266329   PMID:23300826   PMID:23308271   PMID:23313125   PMID:23315474   PMID:23332756   PMID:23343527   PMID:23351563  
PMID:23351706   PMID:23364326   PMID:23371063   PMID:23376610   PMID:23383321   PMID:23396189   PMID:23423383   PMID:23429478   PMID:23446420   PMID:23482494   PMID:23482563   PMID:23520544  
PMID:23537390   PMID:23558405   PMID:23569214   PMID:23592779   PMID:23595735   PMID:23618354   PMID:23643936   PMID:23644062   PMID:23650387   PMID:23699504   PMID:23720040   PMID:23728424  
PMID:23740243   PMID:23754280   PMID:23762363   PMID:23762375   PMID:23776550   PMID:23806618   PMID:23818299   PMID:23872235   PMID:23873040   PMID:23900075   PMID:23916850   PMID:23928057  
PMID:23946445   PMID:23955340   PMID:23994639   PMID:24013724   PMID:24014668   PMID:24072710   PMID:24073291   PMID:24076664   PMID:24130328   PMID:24131628   PMID:24135228   PMID:24146773  
PMID:24161523   PMID:24174682   PMID:24184637   PMID:24191021   PMID:24198274   PMID:24218555   PMID:24218595   PMID:24229643   PMID:24238962   PMID:24260306   PMID:24274029   PMID:24276242  
PMID:24332809   PMID:24357327   PMID:24370450   PMID:24371086   PMID:24415953   PMID:24424161   PMID:24492243   PMID:24506883   PMID:24590292   PMID:24659776   PMID:24697898   PMID:24700818  
PMID:24706806   PMID:24726282   PMID:24726283   PMID:24757136   PMID:24780629   PMID:24797473   PMID:24813615   PMID:24843006   PMID:24852369   PMID:24853502   PMID:24854174   PMID:24886827  
PMID:24895267   PMID:24930703   PMID:24946904   PMID:24948802   PMID:24952961   PMID:24990742   PMID:24990743   PMID:24993944   PMID:25024225   PMID:25024229   PMID:25027328   PMID:25043184  
PMID:25046848   PMID:25053435   PMID:25063195   PMID:25083987   PMID:25104358   PMID:25114218   PMID:25150496   PMID:25176648   PMID:25224227   PMID:25268479   PMID:25294941   PMID:25299669  
PMID:25313900   PMID:25356765   PMID:25362352   PMID:25370275   PMID:25398052   PMID:25446516   PMID:25448080   PMID:25448692   PMID:25458012   PMID:25465115   PMID:25476449   PMID:25516975  
PMID:25581370   PMID:25600212   PMID:25601450   PMID:25631042   PMID:25631876   PMID:25639866   PMID:25645196   PMID:25652406   PMID:25753732   PMID:25774014   PMID:25775587   PMID:25799059  
PMID:25804738   PMID:25808752   PMID:25823816   PMID:25825734   PMID:25834022   PMID:25842978   PMID:25848030   PMID:25848055   PMID:25865348   PMID:25917826   PMID:25961504   PMID:25968320  
PMID:25986147   PMID:26001200   PMID:26010061   PMID:26015562   PMID:26023097   PMID:26027930   PMID:26035863   PMID:26057579   PMID:26094741   PMID:26141957   PMID:26193634   PMID:26219237  
PMID:26235626   PMID:26238476   PMID:26290370   PMID:26293299   PMID:26387942   PMID:26416758   PMID:26436454   PMID:26439398   PMID:26439735   PMID:26450968   PMID:26457609   PMID:26542012  
PMID:26555052   PMID:26653852   PMID:26685326   PMID:26697723   PMID:26702830   PMID:26721501   PMID:26756038   PMID:26797124   PMID:26869039   PMID:26884322   PMID:26906632   PMID:26912062  
PMID:26930384   PMID:26932670   PMID:26952977   PMID:26959361   PMID:26967474   PMID:27046536   PMID:27122169   PMID:27188978   PMID:27214567   PMID:27299863   PMID:27313319   PMID:27320915  
PMID:27340223   PMID:27344183   PMID:27352137   PMID:27414798   PMID:27414999   PMID:27427984   PMID:27443289   PMID:27454381   PMID:27466187   PMID:27492255   PMID:27498049   PMID:27575556  
PMID:27585489   PMID:27585885   PMID:27597527   PMID:27618218   PMID:27621062   PMID:27621083   PMID:27697904   PMID:27736991   PMID:27760825   PMID:27802276   PMID:27811357   PMID:27815529  
PMID:27827819   PMID:27849569   PMID:27892540   PMID:27893742   PMID:27899315   PMID:27935821   PMID:28011038   PMID:28027321   PMID:28031476   PMID:28052872   PMID:28069742   PMID:28069795  
PMID:28081373   PMID:28131983   PMID:28167794   PMID:28195124   PMID:28202523   PMID:28219675   PMID:28235772   PMID:28263766   PMID:28264835   PMID:28276480   PMID:28286175   PMID:28323616  
PMID:28344083   PMID:28370670   PMID:28379358   PMID:28379718   PMID:28380258   PMID:28412462   PMID:28418873   PMID:28432216   PMID:28457748   PMID:28501478   PMID:28506991   PMID:28527696  
PMID:28530676   PMID:28533268   PMID:28560839   PMID:28576771   PMID:28635133   PMID:28645539   PMID:28688895   PMID:28690072   PMID:28694256   PMID:28696225   PMID:28715412   PMID:28734986  
PMID:28768710   PMID:28778798   PMID:28781964   PMID:28793255   PMID:28794157   PMID:28797033   PMID:28799057   PMID:28800946   PMID:28807898   PMID:28813670   PMID:28817564   PMID:28846100  
PMID:28855130   PMID:28859094   PMID:28916710   PMID:28939119   PMID:28943241   PMID:28954202   PMID:29038301   PMID:29046336   PMID:29107558   PMID:29133390   PMID:29166577   PMID:29211850  
PMID:29222391   PMID:29230039   PMID:29279401   PMID:29284139   PMID:29311593   PMID:29311969   PMID:29337143   PMID:29343518   PMID:29386106   PMID:29395868   PMID:29476172   PMID:29487191  
PMID:29615573   PMID:29659575   PMID:29684005   PMID:29725084   PMID:29729398   PMID:29768039   PMID:29771958   PMID:29792854   PMID:29852132   PMID:29875413   PMID:29879378   PMID:29897331  
PMID:29899135   PMID:29910680   PMID:29945868   PMID:29981310   PMID:29999500   PMID:30061668   PMID:30111653   PMID:30134066   PMID:30153454   PMID:30154246   PMID:30235284   PMID:30250269  
PMID:30256984   PMID:30268766   PMID:30291164   PMID:30303712   PMID:30317648   PMID:30352686   PMID:30352852   PMID:30375332   PMID:30389913   PMID:30470823   PMID:30472156   PMID:30485816  
PMID:30503211   PMID:30504126   PMID:30541888   PMID:30575813   PMID:30653268   PMID:30659230   PMID:30675521   PMID:30679745   PMID:30683671   PMID:30685387   PMID:30692221   PMID:30728831  
PMID:30758073   PMID:30791390   PMID:30814516   PMID:30824323   PMID:30854720   PMID:30914320   PMID:30917322   PMID:30918291   PMID:30931988   PMID:30973324   PMID:30982371   PMID:31104943  
PMID:31120883   PMID:31125253   PMID:31167144   PMID:31194676   PMID:31226309   PMID:31269445   PMID:31291587   PMID:31301300   PMID:31331942   PMID:31373354   PMID:31427537   PMID:31481792  
PMID:31482846   PMID:31508820   PMID:31562240   PMID:31604927   PMID:31613912   PMID:31638440   PMID:31719045   PMID:31756413   PMID:31767679   PMID:31845891   PMID:31862844   PMID:31896583  
PMID:31929563   PMID:31940751   PMID:31988246   PMID:32001436   PMID:32022343   PMID:32039485   PMID:32046118   PMID:32075728   PMID:32114096   PMID:32156750   PMID:32169553   PMID:32170006  
PMID:32178760   PMID:32234482   PMID:32268095   PMID:32274496   PMID:32276104   PMID:32290615   PMID:32317081   PMID:32320667   PMID:32325033   PMID:32329192   PMID:32332736   PMID:32344102  
PMID:32439755   PMID:32472648   PMID:32497091   PMID:32527063   PMID:32561646   PMID:32610119   PMID:32652075   PMID:32662771   PMID:32664967   PMID:32674056   PMID:32702291   PMID:32735823  
PMID:32745914   PMID:32747435   PMID:32758357   PMID:32772391   PMID:32783935   PMID:32845239   PMID:32855417   PMID:32901292   PMID:32917668   PMID:32938678   PMID:32945847   PMID:32997394  
PMID:33001865   PMID:33046884   PMID:33060130   PMID:33085791   PMID:33125874   PMID:33188955   PMID:33305180   PMID:33309800   PMID:33318148   PMID:33328171   PMID:33382037   PMID:33417861  
PMID:33480845   PMID:33529374   PMID:33530552   PMID:33552067   PMID:33570491   PMID:33596195   PMID:33631115   PMID:33707239   PMID:33826897   PMID:33846639   PMID:33864885   PMID:33882290  
PMID:33887179   PMID:34018923   PMID:34031962   PMID:34085927   PMID:34091985   PMID:34099102   PMID:34150743   PMID:34155146   PMID:34210780   PMID:34211969   PMID:34225660   PMID:34241634  
PMID:34289374   PMID:34346313   PMID:34348145   PMID:34353359   PMID:34376651   PMID:34399854   PMID:34407400   PMID:34423857   PMID:34427305   PMID:34446743   PMID:34463328   PMID:34486668  
PMID:34525348   PMID:34557486   PMID:34610275   PMID:34630143   PMID:34672258   PMID:34698766   PMID:34757798   PMID:34767969   PMID:34772739   PMID:34822715   PMID:34878091   PMID:34880220  
PMID:34887903   PMID:34893605   PMID:34905510   PMID:34928956   PMID:34929174   PMID:34982030   PMID:35027088   PMID:35039652   PMID:35112129   PMID:35145123   PMID:35293576   PMID:35330911  
PMID:35504891   PMID:35594713  


Genomics

Comparative Map Data
Gli1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910127,165,751 - 127,177,448 (-)NCBIGRCm39mm39
GRCm39 Ensembl10127,165,751 - 127,177,843 (-)Ensembl
GRCm3810127,329,882 - 127,341,579 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10127,329,882 - 127,341,974 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710126,766,938 - 126,778,635 (-)NCBIGRCm37mm9NCBIm37
MGSCv3610126,732,834 - 126,744,528 (-)NCBImm8
Celera10129,722,485 - 129,734,187 (-)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1074.5NCBI
GLI1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381257,459,785 - 57,472,268 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1257,459,785 - 57,472,268 (+)EnsemblGRCh38hg38GRCh38
GRCh371257,853,568 - 57,866,051 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361256,140,201 - 56,152,312 (+)NCBINCBI36hg18NCBI36
Build 341256,140,200 - 56,152,312NCBI
Celera1257,507,905 - 57,520,038 (+)NCBI
Cytogenetic Map12q13.3NCBI
HuRef1254,891,792 - 54,903,925 (+)NCBIHuRef
CHM1_11257,822,031 - 57,834,164 (+)NCBICHM1_1
T2T-CHM13v2.01257,428,074 - 57,440,557 (+)NCBI
Gli1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2763,156,926 - 63,169,579 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl763,156,926 - 63,169,251 (-)Ensembl
Rnor_6.0770,620,794 - 70,633,171 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl770,620,766 - 70,630,338 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0770,795,073 - 70,807,702 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4767,288,291 - 67,297,461 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1767,311,850 - 67,313,540 (-)NCBI
Celera760,297,162 - 60,306,332 (-)NCBICelera
Cytogenetic Map7q22NCBI
Gli1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554585,185,225 - 5,193,196 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554585,181,761 - 5,193,500 (+)NCBIChiLan1.0ChiLan1.0
GLI1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11231,710,051 - 31,722,473 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1231,710,057 - 31,722,473 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01231,453,759 - 31,466,194 (-)NCBIMhudiblu_PPA_v0panPan3
GLI1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1101,565,306 - 1,575,971 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl101,565,244 - 1,575,982 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha101,628,322 - 1,639,223 (+)NCBI
ROS_Cfam_1.0101,574,108 - 1,585,023 (+)NCBI
ROS_Cfam_1.0 Ensembl101,573,578 - 1,585,034 (+)Ensembl
UMICH_Zoey_3.1101,552,194 - 1,563,093 (+)NCBI
UNSW_CanFamBas_1.0101,793,705 - 1,804,582 (+)NCBI
UU_Cfam_GSD_1.0101,919,034 - 1,929,946 (+)NCBI
Gli1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494557,240,448 - 57,247,984 (-)NCBI
SpeTri2.0NW_0049366461,622,308 - 1,629,787 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GLI1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl522,732,516 - 22,747,421 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1522,736,325 - 22,747,421 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2524,835,305 - 24,838,895 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GLI1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11153,371,929 - 53,384,339 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1153,375,558 - 53,385,269 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037192,582,687 - 192,595,094 (-)NCBIVero_WHO_p1.0
Gli1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480210,483,219 - 10,498,609 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462480210,483,279 - 10,494,539 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
Gli1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810127,337,533 - 127,338,139UniSTSGRCm38
MGSCv3710126,774,589 - 126,775,195UniSTSGRCm37
Celera10129,730,137 - 129,730,743UniSTS
Cytogenetic Map10D3UniSTS
cM Map1069.0UniSTS
AV235269  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810127,330,018 - 127,330,122UniSTSGRCm38
MGSCv3710126,767,074 - 126,767,178UniSTSGRCm37
Celera10129,722,621 - 129,722,725UniSTS
Cytogenetic Map10D3UniSTS
cM Map1069.0UniSTS
Whitehead/MRC_RH101383.03UniSTS
AU043488  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810127,329,552 - 127,329,663UniSTSGRCm38
MGSCv3710126,766,608 - 126,766,719UniSTSGRCm37
Celera10129,722,155 - 129,722,266UniSTS
Cytogenetic Map10D3UniSTS
cM Map1069.0UniSTS
Whitehead/MRC_RH101382.75UniSTS
Gli  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10D3UniSTS
cM Map1069.0UniSTS
AF026305  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810127,329,955 - 127,330,037UniSTSGRCm38
MGSCv3710126,767,011 - 126,767,093UniSTSGRCm37
Celera10129,722,558 - 129,722,640UniSTS
Cytogenetic Map10D3UniSTS
cM Map1069.0UniSTS
Whitehead/MRC_RH101383.31UniSTS
Gli1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810127,330,050 - 127,330,452UniSTSGRCm38
MGSCv3710126,767,106 - 126,767,508UniSTSGRCm37
Celera10129,722,653 - 129,723,055UniSTS
Cytogenetic Map10D3UniSTS
Gli1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810127,331,776 - 127,332,545UniSTSGRCm38
MGSCv3710126,768,832 - 126,769,601UniSTSGRCm37
Celera10129,724,379 - 129,725,148UniSTS
Cytogenetic Map10D3UniSTS
Gli1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810127,333,684 - 127,333,744UniSTSGRCm38
MGSCv3710126,770,740 - 126,770,800UniSTSGRCm37
Celera10129,726,287 - 129,726,347UniSTS
Cytogenetic Map10D3UniSTS
Gli1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10D3UniSTS
Gli1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10D3UniSTS


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
1357544Vtbt10_mvertebral trabecular bone trait 10 (mouse)Not determined1097217101130530862Mouse
4142461Bmd25_mbone mineral density 25 (mouse)Not determined1097217101130530862Mouse
11533919Mvb4_mmodifier of vibrator 4 (mouse)397217101130530862Mouse
11533921Mvb2_mmodifier of vibrator 2 (mouse)1097217101130530862Mouse
12880413V125Dq9_mvitamin D active form serum level QTL 9 (mouse)1097535905130530862Mouse
4141402T2dm1sa_mtype 2 diabetes mellitus 1 in SMXA RI mice (mouse)Not determined97758644130530862Mouse
11040593Lmr5e_mleishmaniasis resistance 5e (mouse)1099220635130530862Mouse
11040595Lmr5c_mleishmaniasis resistance 5c (mouse)1099220635130530862Mouse
11040597Lmr5a_mleishmaniasis resistance 5a (mouse)1099220635130530862Mouse
1357744Cfbw4_mcystic fibrosis body weight 4 (mouse)Not determined10100986516130530862Mouse
1301968Estq4_mestradiol regulated response QTL 4 (mouse)Not determined10100986516130530862Mouse
1301901Im5_mimmunoregulatory 5 (mouse)Not determined10101497164130530862Mouse
4141361Cfmq3_mcystic fibrosis modifier QTL 3 (mouse)Not determined10101497164130530862Mouse
1300678Leg2_mlongevity extending gene 2 (mouse)Not determined10102506908130530862Mouse
1301895Exq1_mexploratory and excitability QTL 1 (mouse)Not determined10102847852130530862Mouse
14696727Kidrq2_mkidney weight, right QTL 2 (mouse)10102902508130530862Mouse
4141007Obrq10_mobesity resistance QTL 10 (mouse)Not determined103243727130530862Mouse
4141487Tgq21_mtriglyceride QTL 21 (mouse)Not determined104110021130530862Mouse
14746996Manh69_mmandible shape 69 (mouse)10104763638130530862Mouse
1302200Sle12_msystematic lupus erythematosus susceptibility 12 (mouse)Not determined10105041304130530862Mouse
1357482Nhdlq4_mnon-HDL QTL 4 (mouse)Not determined10105041304130530862Mouse
1300679Nociq2_mnociceptive sensitivity inflammatory QTL 2 (mouse)Not determined10105041304130530862Mouse
11040594Lmr5f_mleishmaniasis resistance 5f (mouse)10105179713130530862Mouse
11040596Lmr5d_mleishmaniasis resistance 5d (mouse)10105179713130530862Mouse
11040598Lmr5b_mleishmaniasis resistance 5b (mouse)10105179713130530862Mouse
4142089Obrq9_mobesity resistance QTL 9 (mouse)Not determined108515907130530862Mouse
4141153Ltgq2_mliver triglyceride QTL 2 (mouse)Not determined108515907130530862Mouse
11041664Lmr25_mleishmaniasis resistance 25 (mouse)10108575094130530862Mouse
11039496Ltpr5b_mLeishmania tropica response 5b (mouse)10108575094130530862Mouse
11049570Lmr25b_mleishmaniasis resistance 25b (mouse)10108575094130530862Mouse
11049563Lmr25a_mleishmaniasis resistance 25a (mouse)10108575094130530862Mouse
12911218Frct3a_mfear conditioning traits 3a (mouse)10122785970129466996Mouse
12911220Frct3c_mfear conditioning traits 3c (mouse)10122785970129466996Mouse
12879490Frct3_mfear conditioning traits 3 (mouse)10122785970129466996Mouse
12904001Opfaq10_mopen field activity QTL 10 (mouse)10125633671129466375Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:117
Count of miRNA genes:113
Interacting mature miRNAs:115
Transcripts:ENSMUST00000026474
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_010296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB025922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB232673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB232674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB232675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB232676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB234616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB234617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC114678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF026305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC131649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC131650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF898732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ062804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CV782971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY442314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000026474   ⟹   ENSMUSP00000026474
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10127,165,751 - 127,177,843 (-)Ensembl
GRCm38.p6 Ensembl10127,329,882 - 127,341,974 (-)Ensembl
RefSeq Acc Id: ENSMUST00000218236   ⟹   ENSMUSP00000151718
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10127,173,378 - 127,175,828 (-)Ensembl
GRCm38.p6 Ensembl10127,337,509 - 127,339,959 (-)Ensembl
RefSeq Acc Id: ENSMUST00000218451
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10127,173,709 - 127,177,755 (-)Ensembl
GRCm38.p6 Ensembl10127,337,840 - 127,341,886 (-)Ensembl
RefSeq Acc Id: ENSMUST00000219671   ⟹   ENSMUSP00000151749
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10127,173,378 - 127,177,843 (-)Ensembl
GRCm38.p6 Ensembl10127,337,509 - 127,341,974 (-)Ensembl
RefSeq Acc Id: ENSMUST00000219808
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10127,170,163 - 127,172,924 (-)Ensembl
GRCm38.p6 Ensembl10127,334,294 - 127,337,055 (-)Ensembl
RefSeq Acc Id: NM_010296   ⟹   NP_034426
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910127,165,751 - 127,177,448 (-)NCBI
GRCm3810127,329,882 - 127,341,579 (-)NCBI
MGSCv3710126,766,938 - 126,778,635 (-)RGD
Celera10129,722,485 - 129,734,187 (-)RGD
cM Map10 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_034426   ⟸   NM_010296
- UniProtKB: P47806 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000151718   ⟸   ENSMUST00000218236
RefSeq Acc Id: ENSMUSP00000026474   ⟸   ENSMUST00000026474
RefSeq Acc Id: ENSMUSP00000151749   ⟸   ENSMUST00000219671
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P47806-F1-model_v2 AlphaFold P47806 1-1111 view protein structure

Promoters
RGD ID:6819323
Promoter ID:MM_KWN:5892
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:ENSMUST00000026474,   ENSMUST00000105252,   UC007HJG.1,   UC007HJH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3610126,779,136 - 126,779,636 (-)MPROMDB
RGD ID:8673496
Promoter ID:EPDNEW_M14778
Type:initiation region
Name:Gli1_1
Description:Mus musculus GLI-Kruppel family member GLI1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3810127,341,886 - 127,341,946EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:95727 AgrOrtholog
Ensembl Genes ENSMUSG00000025407 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000026474 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000151718.2 UniProtKB/TrEMBL
  ENSMUSP00000151749.2 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000026474 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000218236.2 UniProtKB/TrEMBL
  ENSMUST00000219671.2 UniProtKB/TrEMBL
InterPro GLI-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GLI1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:14632 UniProtKB/Swiss-Prot
MGD MGI:95727 ENTREZGENE
NCBI Gene 14632 ENTREZGENE
PANTHER PTHR45718 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR45718:SF2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gli1 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2RRI6_MOUSE UniProtKB/TrEMBL
  A2RRI7_MOUSE UniProtKB/TrEMBL
  D4Q8H8_MOUSE UniProtKB/TrEMBL
  D4Q8I4_MOUSE UniProtKB/TrEMBL
  GLI1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary G5E857 UniProtKB/Swiss-Prot
  Q9QYK1 UniProtKB/Swiss-Prot