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ONTOLOGY REPORT - ANNOTATIONS

Term:L-amino acid catabolic process
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Accession:GO:0170035 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of an L-amino acid.
Synonyms:exact_synonym: L-amino acid breakdown;   L-amino acid catabolism;   L-amino acid degradation


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arginine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDAH1 dimethylarginine dimethylaminohydrolase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:62,548,852...62,683,687
Ensembl chr 6:62,549,152...62,683,729 		JBrowse link
G FAH fumarylacetoacetate hydrolase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11209059) Ensembl
MGI		 PMID:11209059 GO_REF:0000107 NCBI chr 3:57,300,422...57,326,546
Ensembl chr 3:57,300,441...57,326,486 		JBrowse link
G NOS1 nitric oxide synthase 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr26:13,787,341...13,895,176
Ensembl chr26:13,786,309...13,962,332 		JBrowse link
G NOS2 nitric oxide synthase 2 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:42,171,821...42,210,217
Ensembl chr 9:42,171,821...42,208,588 		JBrowse link
G NOS3 nitric oxide synthase 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr16:15,054,196...15,072,454
Ensembl chr16:15,011,344...15,072,277 		JBrowse link
arginine catabolic process to glutamate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC119868948 ornithine aminotransferase, mitochondrial involved_in IBA GO_Central GO_REF:0000033
G OAT ornithine aminotransferase involved_in IBA GO_Central GO_REF:0000033 NCBI chr28:33,763,661...33,788,817
Ensembl chr28:33,758,473...33,788,759 		JBrowse link
arginine catabolic process to ornithine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARG1 arginase 1 involved_in ISO
IBA		 RGD
GO_Central		 PMID:15753084 GO_REF:0000033 RGD:8693655 NCBI chr12:242,717...255,736
Ensembl chr12:242,714...255,305 		JBrowse link
G ARG2 arginase 2 involved_in ISO
IBA		 RGD
GO_Central		 PMID:15753084 GO_REF:0000033 RGD:8693655 NCBI chr 8:41,588,051...41,619,406
Ensembl chr 8:41,588,150...41,619,402 		JBrowse link
arginine catabolic process to proline via ornithine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC119868948 ornithine aminotransferase, mitochondrial involved_in IBA GO_Central GO_REF:0000033
G OAT ornithine aminotransferase involved_in IBA GO_Central GO_REF:0000033 NCBI chr28:33,763,661...33,788,817
Ensembl chr28:33,758,473...33,788,759 		JBrowse link
asparagine catabolic process via L-aspartate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASRGL1 asparaginase and isoaspartyl peptidase 1 acts_upstream_of_or_within
involved_in		 ISO
IBA
IEA		 PMID:12753071 MGI
GO_Central
Ensembl		 PMID:12753071 GO_REF:0000033 GO_REF:0000107 RGD:1299508 NCBI chr18:54,215,920...54,238,094
Ensembl chr18:54,216,926...54,238,059 		JBrowse link
G SCGB1A1 secretoglobin family 1A member 1 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr18:54,187,487...54,191,493
Ensembl chr18:54,187,487...54,191,482 		JBrowse link
aspartate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDO D-aspartate oxidase involved_in ISO (PMID:9163533) UniProt PMID:9163533 NCBI chr12:67,080,646...67,104,429
Ensembl chr12:67,081,329...67,104,397
Ensembl chr12:67,081,329...67,104,397 		JBrowse link
G GOT1 glutamic-oxaloacetic transaminase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:12,352,658...12,377,960
Ensembl chr28:12,352,659...12,414,579 		JBrowse link
G GOT2 glutamic-oxaloacetic transaminase 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:57,968,833...57,994,219
Ensembl chr 2:57,968,833...57,994,218 		JBrowse link
gamma-aminobutyrate shunt term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GAD2 glutamate decarboxylase 2 involved_in ISO
IBA		 RGD
GO_Central		 PMID:8999827 GO_REF:0000033 RGD:1625237 NCBI chr 2:7,365,708...7,450,893
Ensembl chr 2:7,365,283...7,450,893 		JBrowse link
glutamate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GAD1 glutamate decarboxylase 1 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr36:15,351,289...15,391,701
Ensembl chr36:15,349,683...15,391,824 		JBrowse link
G GLUD1 glutamate dehydrogenase 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:34,629,046...34,662,711 JBrowse link
G GOT2 glutamic-oxaloacetic transaminase 2 acts_upstream_of_or_within ISO (PMID:4193185) MGI PMID:4193185 NCBI chr 2:57,968,833...57,994,219
Ensembl chr 2:57,968,833...57,994,218 		JBrowse link
G LOC483859 glutamate dehydrogenase 1 pseudogene involved_in IBA GO_Central GO_REF:0000033 NCBI chr19:21,387,335...21,388,831 JBrowse link
glutamate catabolic process to aspartate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GOT1 glutamic-oxaloacetic transaminase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:4193185) Ensembl
MGI		 PMID:4193185 GO_REF:0000107 NCBI chr28:12,352,658...12,377,960
Ensembl chr28:12,352,659...12,414,579 		JBrowse link
G GOT2 glutamic-oxaloacetic transaminase 2 acts_upstream_of_or_within ISO (PMID:4193185) MGI PMID:4193185 NCBI chr 2:57,968,833...57,994,219
Ensembl chr 2:57,968,833...57,994,218 		JBrowse link
glutamate catabolic process via 2-hydroxyglutarate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADHFE1 alcohol dehydrogenase iron containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr29:16,019,183...16,054,060
Ensembl chr29:16,019,246...16,050,535 		JBrowse link
G VXN vexin involved_in IEA Ensembl GO_REF:0000107 NCBI chr29:16,078,154...16,101,873
Ensembl chr29:16,078,658...16,099,606 		JBrowse link
glutamine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLS glutaminase involved_in
acts_upstream_of_or_within		 IEA
IBA
ISO		 (PMID:16641247) Ensembl
GO_Central
MGI		 PMID:16641247 GO_REF:0000033 GO_REF:0000107 NCBI chr37:1,433,640...1,508,347
Ensembl chr37:1,433,398...1,508,146 		JBrowse link
G GLS2 glutaminase 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:722,105...737,857
Ensembl chr10:722,202...737,753 		JBrowse link
G PPAT phosphoribosyl pyrophosphate amidotransferase ISO RGD PMID:8463258 RGD:633710 NCBI chr13:48,618,460...48,656,164
Ensembl chr13:48,620,714...48,655,780 		JBrowse link
L-alanine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGXT alanine--glyoxylate and serine--pyruvate aminotransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:50,968,291...50,976,089 JBrowse link
G GPT glutamic--pyruvic transaminase involved_in IEA UniProt GO_REF:0000041 NCBI chr13:37,923,757...37,927,843
Ensembl chr13:37,924,422...37,926,156 		JBrowse link
G GPT2 glutamic--pyruvic transaminase 2 involved_in IEA UniProt GO_REF:0000041 NCBI chr15:8,238,295...8,250,789 JBrowse link
L-alanine catabolic process, by transamination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGXT2 alanine--glyoxylate aminotransferase 2 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:73,292,117...73,327,769
Ensembl chr 4:73,292,101...73,327,962 		JBrowse link
L-cysteine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGXT alanine--glyoxylate and serine--pyruvate aminotransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:50,968,291...50,976,089 JBrowse link
G CBS cystathionine beta-synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chr31:37,230,900...37,247,170 JBrowse link
G CDO1 cysteine dioxygenase type 1 involved_in ISO
IBA		 RGD
GO_Central		 PMID:16611641 GO_REF:0000033 RGD:2301357 NCBI chr11:5,512,996...5,524,556
Ensembl chr11:5,371,378...5,524,562 		JBrowse link
L-cysteine catabolic process to hypotaurine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CSAD cysteine sulfinic acid decarboxylase involved_in ISO PMID:9635011 UniProt PMID:9635011 RGD:13800536 NCBI chr27:2,005,482...2,036,703
Ensembl chr27:2,005,355...2,036,228 		JBrowse link
L-cysteine catabolic process to taurine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CSAD cysteine sulfinic acid decarboxylase involved_in ISO PMID:9635011 UniProt PMID:9635011 RGD:13800536 NCBI chr27:2,005,482...2,036,703
Ensembl chr27:2,005,355...2,036,228 		JBrowse link
L-histidine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMDHD1 amidohydrolase domain containing 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr15:35,741,190...35,761,848
Ensembl chr15:35,692,161...35,760,978 		JBrowse link
G HAL histidine ammonia-lyase involved_in
acts_upstream_of_or_within		 IEA
IBA
ISO		 (PMID:8486363) InterPro
GO_Central
MGI
Ensembl		 PMID:8486363 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr15:35,767,314...35,791,086
Ensembl chr15:35,759,672...35,791,003 		JBrowse link
G HDC histidine decarboxylase involved_in
acts_upstream_of_or_within		 IEA
IBA
ISO		 (PMID:11478947) Ensembl
GO_Central
MGI		 PMID:11478947 GO_REF:0000033 GO_REF:0000107 NCBI chr30:16,201,222...16,223,452
Ensembl chr30:16,201,589...16,223,662 		JBrowse link
G UROC1 urocanate hydratase 1 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr20:676,624...717,109
Ensembl chr20:678,073...717,141 		JBrowse link
L-histidine catabolic process to glutamate and formamide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMDHD1 amidohydrolase domain containing 1 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000041 NCBI chr15:35,741,190...35,761,848
Ensembl chr15:35,692,161...35,760,978 		JBrowse link
G FTCD formimidoyltransferase cyclodeaminase involved_in IEA UniProt GO_REF:0000041 NCBI chr31:39,451,557...39,464,249
Ensembl chr31:39,275,159...39,464,715 		JBrowse link
G HAL histidine ammonia-lyase involved_in IEA UniProt GO_REF:0000041 NCBI chr15:35,767,314...35,791,086
Ensembl chr15:35,759,672...35,791,003 		JBrowse link
G UROC1 urocanate hydratase 1 involved_in IEA UniProt GO_REF:0000041 NCBI chr20:676,624...717,109
Ensembl chr20:678,073...717,141 		JBrowse link
L-histidine catabolic process to glutamate and formate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMDHD1 amidohydrolase domain containing 1 involved_in IEA UniProt GO_REF:0000041 NCBI chr15:35,741,190...35,761,848
Ensembl chr15:35,692,161...35,760,978 		JBrowse link
G FTCD formimidoyltransferase cyclodeaminase involved_in IEA UniProt GO_REF:0000041 NCBI chr31:39,451,557...39,464,249
Ensembl chr31:39,275,159...39,464,715 		JBrowse link
G HAL histidine ammonia-lyase involved_in IEA UniProt GO_REF:0000041 NCBI chr15:35,767,314...35,791,086
Ensembl chr15:35,759,672...35,791,003 		JBrowse link
G UROC1 urocanate hydratase 1 involved_in IEA UniProt GO_REF:0000041 NCBI chr20:676,624...717,109
Ensembl chr20:678,073...717,141 		JBrowse link
L-kynurenine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KYAT3 kynurenine aminotransferase 3 involved_in IEA UniProt GO_REF:0000041 NCBI chr 6:59,409,715...59,473,238
Ensembl chr 6:59,416,191...59,473,232 		JBrowse link
G KYNU kynureninase involved_in IEA UniProt GO_REF:0000041 GO_REF:0000104 NCBI chr19:45,022,450...45,150,977
Ensembl chr19:45,022,072...45,149,339 		JBrowse link
L-leucine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCKDK branched chain keto acid dehydrogenase kinase ISO RGD PMID:27472223 RGD:39131293 NCBI chr 6:17,128,615...17,132,925
Ensembl chr 6:17,128,824...17,133,585 		JBrowse link
G HMGCL 3-hydroxy-3-methylglutaryl-CoA lyase involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:75,688,736...75,703,095
Ensembl chr 2:75,688,827...75,702,965 		JBrowse link
G HMGCLL1 3-hydroxy-3-methylglutaryl-CoA lyase like 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:22,748,798...22,953,849
Ensembl chr12:22,701,085...22,954,133 		JBrowse link
G IVD isovaleryl-CoA dehydrogenase involved_in IEA
IBA		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000041 NCBI chr30:7,584,122...7,594,599
Ensembl chr30:7,584,086...7,594,150 		JBrowse link
G KNSTRN kinetochore localized astrin (SPAG5) binding protein involved_in IEA
IBA		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000041 NCBI chr30:7,562,738...7,573,514
Ensembl chr30:7,562,807...7,572,950 		JBrowse link
G MCCC2 methylcrotonyl-CoA carboxylase subunit 2 involved_in IEA
IBA		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000041 NCBI chr 2:54,751,703...54,825,133
Ensembl chr 2:54,751,698...54,823,273 		JBrowse link
L-lysine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AASS aminoadipate-semialdehyde synthase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10567240) Ensembl
MGI		 PMID:10567240 GO_REF:0000107 NCBI chr14:59,950,123...59,993,457
Ensembl chr14:59,951,216...60,000,212 		JBrowse link
L-lysine catabolic process to acetyl-CoA via L-pipecolate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PIPOX pipecolic acid and sarcosine oxidase involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:43,200,343...43,212,288
Ensembl chr 9:43,200,371...43,212,288 		JBrowse link
L-lysine catabolic process to acetyl-CoA via saccharopine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AASS aminoadipate-semialdehyde synthase involved_in IEA UniProt GO_REF:0000041 NCBI chr14:59,950,123...59,993,457
Ensembl chr14:59,951,216...60,000,212 		JBrowse link
G DLST dihydrolipoamide S-succinyltransferase involved_in IEA UniProt GO_REF:0000041 NCBI chr 8:48,003,730...48,025,001
Ensembl chr 8:48,002,211...48,024,999 		JBrowse link
L-phenylalanine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FAH fumarylacetoacetate hydrolase involved_in IEA
IBA		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000041 GO_REF:0000043 GO_REF:0000104 NCBI chr 3:57,300,422...57,326,546
Ensembl chr 3:57,300,441...57,326,486 		JBrowse link
G GSTZ1 glutathione S-transferase zeta 1 involved_in IEA
IBA		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000041 GO_REF:0000043 NCBI chr 8:50,133,496...50,143,487
Ensembl chr 8:50,133,714...50,143,439 		JBrowse link
G HGD homogentisate 1,2-dioxygenase involved_in IEA
IBA		 InterPro
GO_Central
UniProt		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000041 NCBI chr33:24,066,099...24,107,827
Ensembl chr33:24,066,306...24,151,354 		JBrowse link
G HPD 4-hydroxyphenylpyruvate dioxygenase involved_in IEA UniProt GO_REF:0000043 NCBI chr26:7,430,891...7,440,643
Ensembl chr26:7,430,933...7,440,611 		JBrowse link
G IL4I1 interleukin 4 induced 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:106,636,282...106,673,438
Ensembl chr 1:106,657,477...106,673,422 		JBrowse link
G PAH phenylalanine hydroxylase involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000041 GO_REF:0000043 NCBI chr15:41,590,253...41,670,156
Ensembl chr15:41,592,876...41,670,837 		JBrowse link
G QDPR quinoid dihydropteridine reductase involved_in ISO
IBA		 RGD
GO_Central		 PMID:4155291 GO_REF:0000033 RGD:5128604 NCBI chr 3:62,970,850...62,987,512
Ensembl chr 3:62,970,121...63,028,395 		JBrowse link
G RABL3 RAB, member of RAS oncogene family like 3 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000041 NCBI chr33:24,107,754...24,151,378
Ensembl chr33:24,066,306...24,151,354 		JBrowse link
G TAT tyrosine aminotransferase involved_in IEA
IBA		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000041 GO_REF:0000043 GO_REF:0000104 NCBI chr 5:77,365,589...77,378,474
Ensembl chr 5:77,366,138...77,378,419 		JBrowse link
L-serine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CBS cystathionine beta-synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chr31:37,230,900...37,247,170 JBrowse link
G SDS serine dehydratase involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr26:10,725,123...10,728,087 JBrowse link
G SDSL serine dehydratase like involved_in IBA GO_Central GO_REF:0000033 NCBI chr26:10,731,972...10,759,768
Ensembl chr26:10,743,947...10,759,777 		JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 involved_in ISO (PMID:17482557) UniProt PMID:17482557 NCBI chr 5:41,221,531...41,248,653
Ensembl chr 5:41,221,562...41,253,166 		JBrowse link
L-tryptophan catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACMSD aminocarboxymuconate semialdehyde decarboxylase ISO RGD PMID:11802786 RGD:70243 NCBI chr19:37,658,999...37,725,426
Ensembl chr19:37,659,226...37,725,172 		JBrowse link
G AFMID arylformamidase involved_in IEA UniProt GO_REF:0000043
G HAAO 3-hydroxyanthranilate 3,4-dioxygenase involved_in IEA UniProt GO_REF:0000104 NCBI chr10:45,368,157...45,379,521
Ensembl chr10:45,368,178...45,379,160 		JBrowse link
G IDO1 indoleamine 2,3-dioxygenase 1 involved_in IEA UniProt GO_REF:0000043 GO_REF:0000117 NCBI chr16:25,391,759...25,407,161
Ensembl chr16:25,391,754...25,407,048 		JBrowse link
G IDO2 indoleamine 2,3-dioxygenase 2 involved_in IEA UniProt GO_REF:0000043 GO_REF:0000117 NCBI chr16:25,319,035...25,375,085
Ensembl chr16:25,319,035...25,385,515 		JBrowse link
G IL4I1 interleukin 4 induced 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:106,636,282...106,673,438
Ensembl chr 1:106,657,477...106,673,422 		JBrowse link
G KMO kynurenine 3-monooxygenase involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr 7:32,941,487...32,994,541
Ensembl chr 7:32,941,487...32,994,541 		JBrowse link
G KYNU kynureninase involved_in IEA InterPro
Ensembl
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 NCBI chr19:45,022,450...45,150,977
Ensembl chr19:45,022,072...45,149,339 		JBrowse link
G TDO2 tryptophan 2,3-dioxygenase involved_in IEA UniProt GO_REF:0000043 GO_REF:0000117 NCBI chr15:53,406,110...53,424,260
Ensembl chr15:53,405,957...53,423,958 		JBrowse link
L-tryptophan catabolic process to acetyl-CoA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KYNU kynureninase ISO RGD PMID:7236232 RGD:2303721 NCBI chr19:45,022,450...45,150,977
Ensembl chr19:45,022,072...45,149,339 		JBrowse link
G TDO2 tryptophan 2,3-dioxygenase involved_in ISO
IBA		 RGD
GO_Central		 PMID:7236232 GO_REF:0000033 RGD:2303721 NCBI chr15:53,406,110...53,424,260
Ensembl chr15:53,405,957...53,423,958 		JBrowse link
L-tryptophan catabolic process to indole-3-acetate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IL4I1 interleukin 4 induced 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:106,636,282...106,673,438
Ensembl chr 1:106,657,477...106,673,422 		JBrowse link
L-tryptophan catabolic process to kynurenine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AFMID arylformamidase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15866519) InterPro
UniProt
MGI		 PMID:15866519 GO_REF:0000002 GO_REF:0000041 GO_REF:0000104
G IDO1 indoleamine 2,3-dioxygenase 1 involved_in
acts_upstream_of_or_within		 ISO
IBA
IEA		 (PMID:11751753), (PMID:2419335) RGD
GO_Central
UniProt
MGI
InterPro		 PMID:2419335 PMID:10719243 PMID:11513477 PMID:11751753 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 RGD:2290190 RGD:2290543 NCBI chr16:25,391,759...25,407,161
Ensembl chr16:25,391,754...25,407,048 		JBrowse link
G IDO2 indoleamine 2,3-dioxygenase 2 involved_in
acts_upstream_of_or_within		 IEA
IBA
ISO		 (PMID:17499941)
(PMID:17671174)		 InterPro
GO_Central
UniProt
MGI
Ensembl		 PMID:17499941 PMID:17671174 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 GO_REF:0000107 NCBI chr16:25,319,035...25,375,085
Ensembl chr16:25,319,035...25,385,515 		JBrowse link
G KYNU kynureninase involved_in IBA GO_Central GO_REF:0000033 NCBI chr19:45,022,450...45,150,977
Ensembl chr19:45,022,072...45,149,339 		JBrowse link
G TDO2 tryptophan 2,3-dioxygenase involved_in IEA InterPro
UniProt
Ensembl		 GO_REF:0000002 GO_REF:0000041 GO_REF:0000104 GO_REF:0000107 NCBI chr15:53,406,110...53,424,260
Ensembl chr15:53,405,957...53,423,958 		JBrowse link
methionine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MAT1A methionine adenosyltransferase 1A involved_in ISO (PMID:10677294) UniProt PMID:10677294 NCBI chr 4:29,450,857...29,467,251
Ensembl chr 4:29,452,601...29,466,929 		JBrowse link
N(omega),N(omega)-dimethyl-L-arginine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGXT2 alanine--glyoxylate aminotransferase 2 involved_in ISO PMID:2123486 UniProt PMID:2123486 RGD:401901222 NCBI chr 4:73,292,117...73,327,769
Ensembl chr 4:73,292,101...73,327,962 		JBrowse link
negative regulation of arginine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP2B4 ATPase plasma membrane Ca2+ transporting 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr38:321,246...420,262
Ensembl chr38:366,656...416,952 		JBrowse link
proline catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DAO D-amino acid oxidase involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr26:18,032,663...18,057,277
Ensembl chr26:18,033,392...18,057,238 		JBrowse link
G LOC119877562 proline dehydrogenase 1, mitochondrial-like involved_in IEA InterPro GO_REF:0000002
G LOC477562 proline dehydrogenase 1, mitochondrial involved_in IEA InterPro GO_REF:0000002 NCBI chr26:29,039,007...29,059,722 JBrowse link
G PRODH2 proline dehydrogenase 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:116,831,722...116,842,698
Ensembl chr 1:116,831,722...116,916,278 		JBrowse link
proline catabolic process to glutamate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH4A1 aldehyde dehydrogenase 4 family member A1 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000041 GO_REF:0000104 NCBI chr 2:79,688,078...79,712,340
Ensembl chr 2:79,688,086...79,710,540 		JBrowse link
G LOC477562 proline dehydrogenase 1, mitochondrial involved_in IBA GO_Central GO_REF:0000033 NCBI chr26:29,039,007...29,059,722 JBrowse link
G PRODH2 proline dehydrogenase 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:116,831,722...116,842,698
Ensembl chr 1:116,831,722...116,916,278 		JBrowse link
G UBR4 ubiquitin protein ligase E3 component n-recognin 4 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000041 NCBI chr 2:79,403,336...79,536,385
Ensembl chr 2:79,403,351...79,536,208 		JBrowse link
S-adenosylhomocysteine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHCY adenosylhomocysteinase acts_upstream_of_or_within ISO (PMID:12023972) RGD
MGI		 PMID:11741948 PMID:12023972 RGD:730275 NCBI chr24:23,410,553...23,423,494
Ensembl chr24:23,411,140...23,419,767 		JBrowse link
threonine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GCAT glycine C-acetyltransferase involved_in IEA InterPro GO_REF:0000002 NCBI chr10:26,821,121...26,827,496
Ensembl chr10:26,821,027...26,827,707 		JBrowse link
G TDH L-threonine dehydrogenase involved_in
acts_upstream_of_or_within		 IEA
IBA
ISO		 (PMID:21896756) Ensembl
GO_Central
MGI		 PMID:21896756 GO_REF:0000033 GO_REF:0000107 NCBI chr25:26,541,717...26,560,366 JBrowse link
G THA1 threonine aldolase 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:2,909,869...2,917,921 JBrowse link
tyrosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FAH fumarylacetoacetate hydrolase involved_in IEA
IBA		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000043 GO_REF:0000104 NCBI chr 3:57,300,422...57,326,546
Ensembl chr 3:57,300,441...57,326,486 		JBrowse link
G GSTZ1 glutathione S-transferase zeta 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 8:50,133,496...50,143,487
Ensembl chr 8:50,133,714...50,143,439 		JBrowse link
G HPD 4-hydroxyphenylpyruvate dioxygenase acts_upstream_of_or_within
involved_in		 ISO
IBA
IEA		 (PMID:31537781) MGI
GO_Central
UniProt		 PMID:31537781 GO_REF:0000033 GO_REF:0000043 NCBI chr26:7,430,891...7,440,643
Ensembl chr26:7,430,933...7,440,611 		JBrowse link
G IL4I1 interleukin 4 induced 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:106,636,282...106,673,438
Ensembl chr 1:106,657,477...106,673,422 		JBrowse link
G TAT tyrosine aminotransferase involved_in IEA
IBA		 Ensembl
GO_Central
UniProt		 GO_REF:0000033 GO_REF:0000043 GO_REF:0000107 NCBI chr 5:77,365,589...77,378,474
Ensembl chr 5:77,366,138...77,378,419 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 22099
    cellular process 21628
      metabolic process 15370
        catabolic process 2726
          amino acid catabolic process 111
            alpha-amino acid catabolic process 95
              L-amino acid catabolic process 76
                3-cyano-L-alanine catabolic process 0
                L-cysteine catabolic process + 4
                L-histidine catabolic process + 5
                L-kynurenine catabolic process 2
                L-proline betaine catabolic process 0
                L-serine catabolic process 4
                N(omega),N(omega)-dimethyl-L-arginine catabolic process 1
                N(omega)-methyl-L-arginine catabolic process 0
                N-alpha,N-alpha,N-alpha-trimethyl-L-histidine catabolic process 0
                S-adenosylhomocysteine catabolic process 1
                aspartate family amino acid catabolic process + 12
                discadenine catabolic process 0
                erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process + 17
                glutamine family amino acid catabolic process + 29
                phosphoarginine catabolic process 0
                pyruvate family amino acid catabolic process + 10
Path 2
Term Annotations click to browse term
  biological_process 22099
    cellular process 21628
      metabolic process 15370
        small molecule metabolic process 1808
          organic acid metabolic process 971
            oxoacid metabolic process 958
              carboxylic acid metabolic process 943
                carboxylic acid catabolic process 252
                  alpha-amino acid catabolic process 95
                    L-amino acid catabolic process 76
                      3-cyano-L-alanine catabolic process 0
                      L-cysteine catabolic process + 4
                      L-histidine catabolic process + 5
                      L-kynurenine catabolic process 2
                      L-proline betaine catabolic process 0
                      L-serine catabolic process 4
                      N(omega),N(omega)-dimethyl-L-arginine catabolic process 1
                      N(omega)-methyl-L-arginine catabolic process 0
                      N-alpha,N-alpha,N-alpha-trimethyl-L-histidine catabolic process 0
                      S-adenosylhomocysteine catabolic process 1
                      aspartate family amino acid catabolic process + 12
                      discadenine catabolic process 0
                      erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process + 17
                      glutamine family amino acid catabolic process + 29
                      phosphoarginine catabolic process 0
                      pyruvate family amino acid catabolic process + 10
paths to the root