PAH (phenylalanine hydroxylase) - Rat Genome Database

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Gene: PAH (phenylalanine hydroxylase) Canis lupus familiaris
Analyze
Symbol: PAH
Name: phenylalanine hydroxylase
RGD ID: 12136798
Description: ENCODES a protein that exhibits amino acid binding (ortholog); identical protein binding (ortholog); iron ion binding (ortholog); INVOLVED IN L-phenylalanine metabolic process (ortholog); protein hydroxylation (ortholog); tyrosine biosynthetic process (ortholog); PARTICIPATES IN phenylketonuria pathway; tyrosinemia type II pathway; tyrosinemia type III pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); BH4-deficient hyperphenylalaninemia A (ortholog); breast cancer (ortholog); INTERACTS WITH phenobarbital
Type: protein-coding
RefSeq Status: MODEL
Previously known as: phenylalanine-4-hydroxylase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11541,590,253 - 41,670,156 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1541,592,876 - 41,670,837 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1541,957,869 - 42,038,236 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01542,245,356 - 42,325,951 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1542,247,178 - 42,350,533 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11541,514,955 - 41,595,406 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01541,612,701 - 41,693,246 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01541,882,259 - 41,962,824 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PAH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11541,590,253 - 41,670,156 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1541,592,876 - 41,670,837 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1541,957,869 - 42,038,236 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01542,245,356 - 42,325,951 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1542,247,178 - 42,350,533 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11541,514,955 - 41,595,406 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01541,612,701 - 41,693,246 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01541,882,259 - 41,962,824 (-)NCBIUU_Cfam_GSD_1.0
PAH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812102,836,889 - 102,958,441 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12102,836,889 - 102,958,410 (-)EnsemblGRCh38hg38GRCh38
GRCh3712103,230,667 - 103,352,219 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612101,756,234 - 101,835,511 (-)NCBINCBI36Build 36hg18NCBI36
Build 3412101,734,570 - 101,813,848NCBI
Celera12102,896,051 - 102,975,653 (-)NCBICelera
Cytogenetic Map12q23.2NCBI
HuRef12100,291,597 - 100,370,682 (-)NCBIHuRef
CHM1_112103,199,004 - 103,278,175 (-)NCBICHM1_1
T2T-CHM13v2.012102,797,868 - 102,919,265 (-)NCBIT2T-CHM13v2.0
Pah
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391087,357,657 - 87,419,999 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1087,357,657 - 87,419,998 (+)EnsemblGRCm39 Ensembl
GRCm381087,521,795 - 87,584,137 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1087,521,795 - 87,584,136 (+)EnsemblGRCm38mm10GRCm38
MGSCv371086,984,540 - 87,046,882 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361086,951,768 - 87,013,930 (+)NCBIMGSCv36mm8
Celera1089,475,828 - 89,562,695 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1043.64NCBI
Pah
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8723,793,096 - 23,885,631 (+)NCBIGRCr8
mRatBN7.2721,933,179 - 21,998,134 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl721,933,179 - 21,998,130 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx723,927,881 - 23,992,835 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0726,090,559 - 26,155,515 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0725,867,639 - 25,932,579 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0728,066,639 - 28,129,772 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl728,066,635 - 28,129,769 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0728,180,707 - 28,245,428 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4724,175,898 - 24,243,592 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1724,196,183 - 24,263,859 (+)NCBI
Celera719,108,301 - 19,168,259 (+)NCBICelera
RH 3.4 Map7119.56RGD
Cytogenetic Map7q13NCBI
Pah
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540537,846,354 - 37,909,457 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540537,848,486 - 37,909,163 (-)NCBIChiLan1.0ChiLan1.0
PAH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210110,904,004 - 110,982,422 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112110,900,401 - 110,978,818 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012100,417,267 - 100,496,888 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112103,811,761 - 103,891,726 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12103,811,761 - 103,891,726 (-)Ensemblpanpan1.1panPan2
Pah
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494518,306,664 - 18,401,497 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649211,342,518 - 11,412,209 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649211,342,566 - 11,412,323 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PAH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl581,385,435 - 81,463,451 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1581,385,401 - 81,460,569 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2585,200,848 - 85,228,826 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PAH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11198,065,869 - 98,140,011 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1198,063,199 - 98,139,285 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037146,870,938 - 146,945,036 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pah
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247505,527,638 - 5,601,964 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247505,527,720 - 5,598,173 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PAH
898 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
5 4 4 22 21 16 6 6 6 6 26 16 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000011719   ⟹   ENSCAFP00000010860
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1541,592,876 - 41,670,388 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000063256   ⟹   ENSCAFP00000061230
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1541,592,876 - 41,670,388 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000063802   ⟹   ENSCAFP00000047070
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1541,592,876 - 41,670,339 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000075549   ⟹   ENSCAFP00000062954
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1541,592,876 - 41,670,388 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000079440   ⟹   ENSCAFP00000059594
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1541,592,876 - 41,670,664 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000081788   ⟹   ENSCAFP00000051238
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1541,592,876 - 41,670,837 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845016828   ⟹   ENSCAFP00845013087
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1542,247,178 - 42,350,533 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845016927   ⟹   ENSCAFP00845013175
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1542,247,178 - 42,326,515 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845017000   ⟹   ENSCAFP00845013241
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1542,247,178 - 42,326,515 (-)Ensembl
RefSeq Acc Id: XM_038496465   ⟹   XP_038352393
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11541,514,955 - 41,595,406 (-)NCBI
RefSeq Acc Id: XM_038558862   ⟹   XP_038414790
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01541,882,259 - 41,962,824 (-)NCBI
RefSeq Acc Id: XM_038622784   ⟹   XP_038478712
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01541,612,701 - 41,693,246 (-)NCBI
RefSeq Acc Id: XM_038688455   ⟹   XP_038544383
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01542,245,356 - 42,325,951 (-)NCBI
RefSeq Acc Id: XM_532671   ⟹   XP_532671
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11541,590,253 - 41,670,156 (-)NCBI
Dog10K_Boxer_Tasha1541,957,869 - 42,038,236 (-)NCBI
Sequence:
RefSeq Acc Id: XP_532671   ⟸   XM_532671
- UniProtKB: A0A8C0LPC7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000010860   ⟸   ENSCAFT00000011719
Ensembl Acc Id: ENSCAFP00000059594   ⟸   ENSCAFT00000079440
Ensembl Acc Id: ENSCAFP00000061230   ⟸   ENSCAFT00000063256
Ensembl Acc Id: ENSCAFP00000047070   ⟸   ENSCAFT00000063802
Ensembl Acc Id: ENSCAFP00000062954   ⟸   ENSCAFT00000075549
Ensembl Acc Id: ENSCAFP00000051238   ⟸   ENSCAFT00000081788
RefSeq Acc Id: XP_038352393   ⟸   XM_038496465
RefSeq Acc Id: XP_038478712   ⟸   XM_038622784
RefSeq Acc Id: XP_038544383   ⟸   XM_038688455
- UniProtKB: A0A8C0LPC7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038414790   ⟸   XM_038558862
- UniProtKB: A0A8C0LPC7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845013087   ⟸   ENSCAFT00845016828
Ensembl Acc Id: ENSCAFP00845013175   ⟸   ENSCAFT00845016927
Ensembl Acc Id: ENSCAFP00845013241   ⟸   ENSCAFT00845017000

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000007310 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030009375 UniProtKB/TrEMBL
  ENSCAFG00040017369 UniProtKB/TrEMBL
  ENSCAFG00845009553 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000011719.5 UniProtKB/TrEMBL
  ENSCAFT00000075549.2 UniProtKB/TrEMBL
  ENSCAFT00000079440.2 UniProtKB/TrEMBL
  ENSCAFT00030017342.1 UniProtKB/TrEMBL
  ENSCAFT00030017445.1 UniProtKB/TrEMBL
  ENSCAFT00040032060.1 UniProtKB/TrEMBL
  ENSCAFT00040032247.1 UniProtKB/TrEMBL
  ENSCAFT00040032349.1 UniProtKB/TrEMBL
  ENSCAFT00845016828 ENTREZGENE
  ENSCAFT00845016828.1 UniProtKB/TrEMBL
  ENSCAFT00845016927.1 UniProtKB/TrEMBL
  ENSCAFT00845017000.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.800.10 UniProtKB/TrEMBL
InterPro ACT-like_dom_sf UniProtKB/TrEMBL
  ACT_dom UniProtKB/TrEMBL
  ArAA_hydroxylase UniProtKB/TrEMBL
  ArAA_hydroxylase_Fe/CU_BS UniProtKB/TrEMBL
  ArAA_hydroxylase_sf UniProtKB/TrEMBL
  Aro-AA_hydroxylase_C_sf UniProtKB/TrEMBL
  Aromatic-AA_hydroxylase_C UniProtKB/TrEMBL
  Euk_PheOH_cat UniProtKB/TrEMBL
  Phe-4-hydroxylase_tetra UniProtKB/TrEMBL
  Tyrosine_3-monooxygenase-like UniProtKB/TrEMBL
NCBI Gene PAH ENTREZGENE
PANTHER PHENYLALANINE-4-HYDROXYLASE UniProtKB/TrEMBL
  PTHR11473 UniProtKB/TrEMBL
Pfam ACT UniProtKB/TrEMBL
  Biopterin_H UniProtKB/TrEMBL
PIRSF PIRSF000336 UniProtKB/TrEMBL
PRINTS FYWHYDRXLASE UniProtKB/TrEMBL
PROSITE ACT UniProtKB/TrEMBL
  BH4_AAA_HYDROXYL_1 UniProtKB/TrEMBL
  BH4_AAA_HYDROXYL_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF55021 UniProtKB/TrEMBL
  SSF56534 UniProtKB/TrEMBL
UniProt A0A8C0LPC7 ENTREZGENE
  A0A8C0RG82_CANLF UniProtKB/TrEMBL
  A0A8C0T0N4_CANLF UniProtKB/TrEMBL
  A0A8C0T0X6_CANLF UniProtKB/TrEMBL
  A0A8I3N1J8_CANLF UniProtKB/TrEMBL
  A0A8I3NCS2_CANLF UniProtKB/TrEMBL
  A0A8I3RVD0_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:54218 ENTREZGENE