AGXT2 (alanine--glyoxylate aminotransferase 2) - Rat Genome Database

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Gene: AGXT2 (alanine--glyoxylate aminotransferase 2) Canis lupus familiaris
Analyze
Symbol: AGXT2
Name: alanine--glyoxylate aminotransferase 2
RGD ID: 12215297
Description: ENCODES a protein that exhibits beta-alanine-pyruvate transaminase activity (ortholog); INVOLVED IN N(omega),N(omega)-dimethyl-L-arginine catabolic process (ortholog); ASSOCIATED WITH alpha-methylacyl-CoA racemase deficiency (ortholog); atrial fibrillation (ortholog); Beta-Aminoisobutyric Acid, Urinary Excretion of (ortholog); FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: alanine--glyoxylate aminotransferase 2, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1473,292,117 - 73,327,769 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl473,292,101 - 73,327,962 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha472,908,514 - 72,944,184 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0473,797,662 - 73,833,439 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl473,797,685 - 73,833,434 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1473,545,393 - 73,581,098 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0473,668,622 - 73,704,659 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0474,202,253 - 74,237,942 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
AGXT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1473,292,117 - 73,327,769 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl473,292,101 - 73,327,962 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha472,908,514 - 72,944,184 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0473,797,662 - 73,833,439 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl473,797,685 - 73,833,434 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1473,545,393 - 73,581,098 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0473,668,622 - 73,704,659 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0474,202,253 - 74,237,942 (+)NCBIUU_Cfam_GSD_1.0
AGXT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38534,998,102 - 35,047,949 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl534,998,101 - 35,048,135 (-)EnsemblGRCh38hg38GRCh38
GRCh37534,998,207 - 35,048,054 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36535,033,963 - 35,083,756 (-)NCBINCBI36Build 36hg18NCBI36
Build 34535,033,962 - 35,083,756NCBI
Celera534,880,411 - 34,930,420 (-)NCBICelera
Cytogenetic Map5p13.2NCBI
HuRef534,946,958 - 34,996,974 (-)NCBIHuRef
CHM1_1535,000,510 - 35,050,560 (-)NCBICHM1_1
T2T-CHM13v2.0535,245,145 - 35,294,998 (-)NCBIT2T-CHM13v2.0
Agxt2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391510,358,602 - 10,410,244 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1510,358,618 - 10,410,239 (+)EnsemblGRCm39 Ensembl
GRCm381510,358,516 - 10,410,158 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1510,358,532 - 10,410,153 (+)EnsemblGRCm38mm10GRCm38
MGSCv371510,288,334 - 10,339,493 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361510,303,304 - 10,354,463 (+)NCBIMGSCv36mm8
Celera1510,155,885 - 10,206,282 (+)NCBICelera
Cytogenetic Map15A1NCBI
cM Map155.35NCBI
Agxt2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8261,063,416 - 61,104,828 (+)NCBIGRCr8
mRatBN7.2259,336,252 - 59,377,664 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl259,336,283 - 59,377,926 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx266,436,973 - 66,485,549 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0264,558,502 - 64,607,076 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0259,559,851 - 59,608,437 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0260,337,667 - 60,379,144 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl260,337,667 - 60,379,420 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0284,308,289 - 84,348,843 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4259,713,365 - 59,754,876 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1259,641,628 - 59,683,371 (+)NCBI
Celera259,294,201 - 59,335,576 (-)NCBICelera
Cytogenetic Map2q16NCBI
Agxt2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542620,101,620 - 20,142,620 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542620,102,368 - 20,142,596 (-)NCBIChiLan1.0ChiLan1.0
AGXT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2475,288,478 - 75,339,754 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1573,442,171 - 73,493,386 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0575,322,351 - 75,373,261 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1580,601,554 - 80,652,575 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl580,601,554 - 80,652,575 (+)Ensemblpanpan1.1panPan2
Agxt2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213224,827,079 - 224,863,177 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365186,508,928 - 6,544,146 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365186,508,928 - 6,544,324 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AGXT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1620,576,659 - 20,617,011 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11620,576,661 - 20,617,008 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21621,478,686 - 21,519,012 (-)NCBISscrofa10.2Sscrofa10.2susScr3
AGXT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1433,889,615 - 33,933,500 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl433,888,533 - 33,933,449 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607124,192,128 - 24,237,014 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Agxt2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475919,858,148 - 19,938,229 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475919,858,255 - 19,909,516 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in AGXT2
430 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system nervous system reproductive system respiratory system adipose tissue
High
Medium 6 6 6
Low 4
Below cutoff 2 3 2 5 6 7 8 4 2

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005619401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038474232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038474233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038535358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038535359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038599634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038599635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038663948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038663949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_850322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000029824   ⟹   ENSCAFP00000027717
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl473,292,101 - 73,327,747 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000069828   ⟹   ENSCAFP00000052449
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl473,292,101 - 73,324,589 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000083051   ⟹   ENSCAFP00000053968
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl473,292,199 - 73,327,962 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845001420   ⟹   ENSCAFP00845001106
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl473,797,685 - 73,833,434 (+)Ensembl
RefSeq Acc Id: XM_005619401   ⟹   XP_005619458
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1473,292,199 - 73,327,769 (+)NCBI
Dog10K_Boxer_Tasha472,908,514 - 72,944,184 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038474232   ⟹   XP_038330160
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1473,545,393 - 73,581,098 (+)NCBI
RefSeq Acc Id: XM_038474233   ⟹   XP_038330161
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1473,545,393 - 73,581,098 (+)NCBI
RefSeq Acc Id: XM_038535358   ⟹   XP_038391286
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0474,202,253 - 74,237,942 (+)NCBI
RefSeq Acc Id: XM_038535359   ⟹   XP_038391287
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0474,202,253 - 74,237,942 (+)NCBI
RefSeq Acc Id: XM_038599634   ⟹   XP_038455562
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0473,668,622 - 73,704,659 (+)NCBI
RefSeq Acc Id: XM_038599635   ⟹   XP_038455563
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0473,668,622 - 73,704,659 (+)NCBI
RefSeq Acc Id: XM_038663948   ⟹   XP_038519876
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0473,797,662 - 73,833,439 (+)NCBI
RefSeq Acc Id: XM_038663949   ⟹   XP_038519877
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0473,797,662 - 73,833,439 (+)NCBI
RefSeq Acc Id: XM_850322   ⟹   XP_855415
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1473,292,199 - 73,327,769 (+)NCBI
Dog10K_Boxer_Tasha472,908,514 - 72,944,184 (+)NCBI
Sequence:
RefSeq Acc Id: XP_855415   ⟸   XM_850322
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LTI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005619458   ⟸   XM_005619401
- Peptide Label: isoform X2
- UniProtKB: A0A8C0S7U7 (UniProtKB/TrEMBL),   A0A8I3MGB1 (UniProtKB/TrEMBL),   A0A8C0LTI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000027717   ⟸   ENSCAFT00000029824
RefSeq Acc Id: ENSCAFP00000052449   ⟸   ENSCAFT00000069828
RefSeq Acc Id: ENSCAFP00000053968   ⟸   ENSCAFT00000083051
RefSeq Acc Id: XP_038330160   ⟸   XM_038474232
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038330161   ⟸   XM_038474233
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038455562   ⟸   XM_038599634
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038455563   ⟸   XM_038599635
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038519876   ⟸   XM_038663948
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LTI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038519877   ⟸   XM_038663949
- Peptide Label: isoform X2
- UniProtKB: A0A8C0S7U7 (UniProtKB/TrEMBL),   A0A8I3MGB1 (UniProtKB/TrEMBL),   A0A8C0LTI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038391286   ⟸   XM_038535358
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LTI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038391287   ⟸   XM_038535359
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LTI7 (UniProtKB/TrEMBL),   A0A8C0S7U7 (UniProtKB/TrEMBL),   A0A8I3MGB1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845001106   ⟸   ENSCAFT00845001420

Promoters
RGD ID:13683064
Promoter ID:EPDNEW_C1134
Type:initiation region
Name:AGXT2_1
Description:alanine--glyoxylate aminotransferase 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1473,292,142 - 73,292,202EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000018790 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030000896 UniProtKB/TrEMBL
  ENSCAFG00040010604 UniProtKB/TrEMBL
  ENSCAFG00845000838 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000029824.5 UniProtKB/TrEMBL
  ENSCAFT00030001615.1 UniProtKB/TrEMBL
  ENSCAFT00030001648.1 UniProtKB/TrEMBL
  ENSCAFT00040019926.1 UniProtKB/TrEMBL
  ENSCAFT00040020049.1 UniProtKB/TrEMBL
  ENSCAFT00845001420 ENTREZGENE
  ENSCAFT00845001420.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.640.10 UniProtKB/TrEMBL
  3.90.1150.10 UniProtKB/TrEMBL
InterPro Aminotrans_3 UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_major UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_small UniProtKB/TrEMBL
KEGG Report cfa:612589 UniProtKB/TrEMBL
NCBI Gene AGXT2 ENTREZGENE
PANTHER ALANINE--GLYOXYLATE AMINOTRANSFERASE 2, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR45688 UniProtKB/TrEMBL
Pfam Aminotran_3 UniProtKB/TrEMBL
PIRSF Transaminase_4ab_Lys_Orn UniProtKB/TrEMBL
PROSITE AA_TRANSFER_CLASS_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF53383 UniProtKB/TrEMBL
UniProt A0A8C0LTI7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0LYN5_CANLF UniProtKB/TrEMBL
  A0A8C0S7U7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0YV46_CANLF UniProtKB/TrEMBL
  A0A8I3MGB1 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:50868 ENTREZGENE