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ONTOLOGY REPORT - ANNOTATIONS

Term:aspartate family amino acid catabolic process
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Accession:GO:0009068 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of amino acids of the aspartate family, comprising asparagine, aspartate, lysine, methionine and threonine.
Synonyms:exact_synonym: aspartate family amino acid breakdown;   aspartate family amino acid catabolism;   aspartate family amino acid degradation


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asparagine catabolic process via L-aspartate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asrgl1 asparaginase and isoaspartyl peptidase 1 involved_in
acts_upstream_of_or_within		 ISO
IBA
IDA		 (PMID:19839645)
GO_REF:0000033
PMID:12753071		 RGD
GO_Central		 PMID:19839645 PMID:12753071 PMID:12753071 GO_REF:0000033, RGD:1299508, RGD:1299508 NCBI chr 1:206,006,103...206,027,115
Ensembl chr 1:206,006,109...206,027,108 		JBrowse link
aspartate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddo D-aspartate oxidase involved_in ISO
IBA		 (PMID:9163533)
GO_REF:0000033		 RGD
GO_Central		 PMID:9163533 GO_REF:0000033 NCBI chr20:44,090,823...44,109,962
Ensembl chr20:44,090,914...44,133,095 		JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1 involved_in ISO
IEA		 (PMID:2241899)
GO_REF:0000107		 RGD
Ensembl		 PMID:2241899 GO_REF:0000107 NCBI chr 1:242,357,293...242,381,535
Ensembl chr 1:242,357,306...242,380,633 		JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 involved_in ISO
IBA		 (PMID:2567216)
GO_REF:0000033		 RGD
GO_Central		 PMID:2567216 GO_REF:0000033 NCBI chr19:9,174,304...9,199,995
Ensembl chr19:9,174,311...9,199,994 		JBrowse link
L-lysine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aass aminoadipate-semialdehyde synthase acts_upstream_of_or_within ISO (PMID:10567240) RGD PMID:10567240 NCBI chr 4:51,606,461...51,663,136
Ensembl chr 4:51,606,462...51,663,136 		JBrowse link
L-lysine catabolic process to acetyl-CoA via L-pipecolate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pipox pipecolic acid and sarcosine oxidase involved_in ISO
IBA		 (PMID:10642506)
GO_REF:0000033		 RGD
GO_Central		 PMID:10642506 GO_REF:0000033 NCBI chr10:62,769,874...62,783,484
Ensembl chr10:62,769,900...62,782,370 		JBrowse link
L-lysine catabolic process to acetyl-CoA via saccharopine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aadat aminoadipate aminotransferase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr16:29,509,392...29,544,332
Ensembl chr16:29,509,394...29,544,332 		JBrowse link
G Aass aminoadipate-semialdehyde synthase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 4:51,606,461...51,663,136
Ensembl chr 4:51,606,462...51,663,136 		JBrowse link
G Dlst dihydrolipoamide S-succinyltransferase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 6:104,758,511...104,783,296
Ensembl chr 6:104,758,631...104,783,296 		JBrowse link
methionine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mat1a methionine adenosyltransferase 1A involved_in ISO
ISS		 (PMID:10677294)
GO_REF:0000024		 RGD
UniProt		 PMID:10677294 GO_REF:0000024 NCBI chr16:16,983,084...17,001,284
Ensembl chr16:16,983,022...17,001,274 		JBrowse link
threonine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gcat glycine C-acetyltransferase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:110,595,126...110,601,474
Ensembl chr 7:110,595,091...110,601,473 		JBrowse link
G Sds serine dehydratase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:36,083,226...36,090,540
Ensembl chr12:36,083,229...36,088,203 		JBrowse link
G Sdsl serine dehydratase-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:36,099,693...36,109,914
Ensembl chr12:36,099,693...36,109,906 		JBrowse link
G Tdh L-threonine dehydrogenase involved_in
acts_upstream_of_or_within		 ISO
IBA		 (MGI:5905531|PMID:26492815)
(PMID:26492815)
(PMID:21896756)
GO_REF:0000033		 RGD
GO_Central		 PMID:21896756 PMID:26492815 GO_REF:0000033 MGI:5905531 NCBI chr15:37,739,823...37,753,365
Ensembl chr15:37,739,823...37,753,365 		JBrowse link
G Tha1 threonine aldolase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:103,094,681...103,100,169
Ensembl chr10:103,094,681...103,100,519 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20134
    cellular process 19326
      metabolic process 12309
        primary metabolic process 10935
          amino acid metabolic process 302
            proteinogenic amino acid metabolic process 174
              aspartate family amino acid metabolic process 43
                aspartate family amino acid catabolic process 14
                  L-lysine catabolic process + 4
                  asparagine catabolic process + 1
                  aspartate catabolic process 3
                  hydroxylysine catabolic process 0
                  methionine catabolic process + 1
                  threonine catabolic process + 5
Path 2
Term Annotations click to browse term
  biological_process 20134
    cellular process 19326
      metabolic process 12309
        small molecule metabolic process 1899
          organic acid metabolic process 1034
            oxoacid metabolic process 1023
              carboxylic acid metabolic process 1008
                alpha-amino acid metabolic process 220
                  L-amino acid metabolic process 192
                    L-amino acid catabolic process 76
                      aspartate family amino acid catabolic process 14
                        L-lysine catabolic process + 4
                        asparagine catabolic process + 1
                        aspartate catabolic process 3
                        hydroxylysine catabolic process 0
                        methionine catabolic process + 1
                        threonine catabolic process + 5
paths to the root