KMO (kynurenine 3-monooxygenase) - Rat Genome Database

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Gene: KMO (kynurenine 3-monooxygenase) Canis lupus familiaris
Analyze
Symbol: KMO
Name: kynurenine 3-monooxygenase
RGD ID: 12246165
Description: ENCODES a protein that exhibits kynurenine 3-monooxygenase activity (ortholog); INVOLVED IN cellular response to interleukin-1 (ortholog); cellular response to lipopolysaccharide (ortholog); kynurenic acid biosynthetic process (ortholog); PARTICIPATES IN kynurenine metabolic pathway; tryptophan metabolic pathway; ASSOCIATED WITH Acute Experimental Pancreatitis (ortholog); allergic contact dermatitis (ortholog); depressive disorder (ortholog); FOUND IN extracellular space (ortholog); mitochondrial outer membrane (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1732,941,487 - 32,994,541 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl732,941,487 - 32,994,541 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha732,419,026 - 32,472,013 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0732,767,900 - 32,821,021 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl732,767,900 - 32,821,021 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1732,602,997 - 32,656,010 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0732,627,134 - 32,680,135 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0732,875,278 - 32,928,138 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202   PMID:32720434  


Genomics

Comparative Map Data
KMO
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1732,941,487 - 32,994,541 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl732,941,487 - 32,994,541 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha732,419,026 - 32,472,013 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0732,767,900 - 32,821,021 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl732,767,900 - 32,821,021 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1732,602,997 - 32,656,010 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0732,627,134 - 32,680,135 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0732,875,278 - 32,928,138 (+)NCBIUU_Cfam_GSD_1.0
KMO
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381241,532,378 - 241,595,642 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1241,532,134 - 241,595,642 (+)EnsemblGRCh38hg38GRCh38
GRCh371241,695,678 - 241,758,944 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361239,762,330 - 239,825,566 (+)NCBINCBI36Build 36hg18NCBI36
Build 341238,021,747 - 238,084,984NCBI
Celera1214,950,683 - 215,013,947 (+)NCBICelera
Cytogenetic Map1q43NCBI
HuRef1212,153,669 - 212,217,265 (+)NCBIHuRef
CHM1_11242,968,145 - 243,031,623 (+)NCBICHM1_1
T2T-CHM13v2.01240,943,769 - 241,007,043 (+)NCBIT2T-CHM13v2.0
Kmo
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391175,459,759 - 175,488,419 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1175,447,947 - 175,489,682 (+)EnsemblGRCm39 Ensembl
GRCm381175,632,193 - 175,660,853 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1175,620,381 - 175,662,116 (+)EnsemblGRCm38mm10GRCm38
MGSCv371177,562,324 - 177,590,984 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361177,468,868 - 177,497,528 (+)NCBIMGSCv36mm8
Celera1182,717,886 - 182,746,514 (+)NCBICelera
Cytogenetic Map1H3NCBI
cM Map181.6NCBI
Kmo
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81390,089,340 - 90,121,108 (+)NCBIGRCr8
mRatBN7.21387,557,080 - 87,589,334 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1387,557,286 - 87,588,881 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1390,057,159 - 90,088,772 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01391,457,419 - 91,489,032 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01388,636,585 - 88,668,179 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01393,684,324 - 93,715,378 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1393,684,437 - 93,716,227 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01398,149,340 - 98,180,255 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41391,363,517 - 91,394,174 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11391,552,400 - 91,583,055 (+)NCBI
Celera1387,155,915 - 87,185,730 (+)NCBICelera
Cytogenetic Map13q24NCBI
Kmo
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540610,493,379 - 10,527,201 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540610,496,102 - 10,527,181 (-)NCBIChiLan1.0ChiLan1.0
KMO
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v217,552,637 - 7,615,066 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117,775,244 - 7,838,816 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01217,094,037 - 217,157,827 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11222,075,577 - 222,138,866 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1222,075,268 - 222,138,866 (+)Ensemblpanpan1.1panPan2
Kmo
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934445,818,797 - 45,870,212 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365268,877,434 - 8,919,548 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365268,877,085 - 8,928,280 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KMO
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1012,442,645 - 12,490,409 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11012,442,877 - 12,489,417 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21014,879,142 - 14,937,353 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KMO
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12578,611,194 - 78,670,314 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2578,628,757 - 78,670,181 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605580,745,055 - 80,803,000 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kmo
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477111,899,624 - 11,942,806 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477111,900,020 - 11,942,943 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in KMO
531 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 32 21 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000024904   ⟹   ENSCAFP00000023107
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl732,941,487 - 32,994,541 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845007852   ⟹   ENSCAFP00845006207
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl732,767,900 - 32,821,021 (+)Ensembl
RefSeq Acc Id: NM_001195512   ⟹   NP_001182441
RefSeq Status: VALIDATED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1732,941,487 - 32,994,541 (+)NCBI
Dog10K_Boxer_Tasha732,419,026 - 32,472,013 (+)NCBI
ROS_Cfam_1.0732,767,900 - 32,821,021 (+)NCBI
UMICH_Zoey_3.1732,602,997 - 32,656,010 (+)NCBI
UNSW_CanFamBas_1.0732,627,134 - 32,680,135 (+)NCBI
UU_Cfam_GSD_1.0732,875,278 - 32,928,138 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001182441 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ADM52315 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000023107.4
  ENSCAFP00030033455.1
  ENSCAFP00040004691.1
  ENSCAFP00845006207
  ENSCAFP00845006207.1
RefSeq Acc Id: NP_001182441   ⟸   NM_001195512
- UniProtKB: E1B2G6 (UniProtKB/TrEMBL),   A0A8C0NZQ2 (UniProtKB/TrEMBL),   F6PNZ5 (UniProtKB/TrEMBL),   A0A8C0LHJ0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000023107   ⟸   ENSCAFT00000024904
Ensembl Acc Id: ENSCAFP00845006207   ⟸   ENSCAFT00845007852
Protein Domains
FAD-binding

Promoters
RGD ID:13683968
Promoter ID:EPDNEW_C2036
Type:single initiation site
Name:KMO_1
Description:kynurenine 3-monooxygenase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1732,941,477 - 32,941,537EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000015726 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030020879 UniProtKB/TrEMBL
  ENSCAFG00040002862 UniProtKB/TrEMBL
  ENSCAFG00845004366 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000024904.5 UniProtKB/TrEMBL
  ENSCAFT00030038352.1 UniProtKB/TrEMBL
  ENSCAFT00040005461.1 UniProtKB/TrEMBL
  ENSCAFT00845007852 ENTREZGENE
  ENSCAFT00845007852.1 UniProtKB/TrEMBL
Gene3D-CATH 3.50.50.60 UniProtKB/TrEMBL
InterPro FAD-bd UniProtKB/TrEMBL
  FAD/NAD-bd_sf UniProtKB/TrEMBL
  Kynurenine_monooxygenase UniProtKB/TrEMBL
KEGG Report cfa:480093 UniProtKB/TrEMBL
NCBI Gene KMO ENTREZGENE
PANTHER KYNURENINE 3-MONOOXYGENASE UniProtKB/TrEMBL
  KYNURENINE 3-MONOOXYGENASE UniProtKB/TrEMBL
Pfam FAD_binding_3 UniProtKB/TrEMBL
PRINTS RNGMNOXGNASE UniProtKB/TrEMBL
Superfamily-SCOP SSF51905 UniProtKB/TrEMBL
UniProt A0A8C0LHJ0 ENTREZGENE
  A0A8C0NZQ2 ENTREZGENE, UniProtKB/TrEMBL
  E1B2G6 ENTREZGENE, UniProtKB/TrEMBL
  F6PNZ5 ENTREZGENE
UniProt Secondary F6PNZ5 UniProtKB/TrEMBL
VGNC ID VGNC:42488 ENTREZGENE