AMDHD1 (amidohydrolase domain containing 1) - Rat Genome Database
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Gene: AMDHD1 (amidohydrolase domain containing 1) Canis lupus familiaris
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Symbol: AMDHD1
Name: amidohydrolase domain containing 1
RGD ID: 12257358
Description: INVOLVED IN histidine catabolic process to glutamate and formamide (inferred); histidine catabolic process to glutamate and formate (inferred); mRNA splicing, via spliceosome (inferred); PARTICIPATES IN histidine metabolic pathway; histidinemia pathway; FOUND IN cytoplasm (inferred); integral component of membrane (inferred); sno(s)RNA-containing ribonucleoprotein complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: probable imidazolonepropionase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1535,692,161 - 35,760,978 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11535,741,190 - 35,761,848 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
AMDHD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1535,692,161 - 35,760,978 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11535,741,190 - 35,761,848 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
AMDHD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1295,943,331 - 95,968,720 (+)EnsemblGRCh38hg38GRCh38
GRCh381295,943,331 - 95,968,720 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371296,337,071 - 96,362,370 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361294,861,202 - 94,886,500 (+)NCBINCBI36hg18NCBI36
Celera1296,005,967 - 96,028,689 (+)NCBI
Cytogenetic Map12q23.1NCBI
HuRef1293,401,507 - 93,424,233 (+)NCBIHuRef
CHM1_11296,302,439 - 96,327,344 (+)NCBICHM1_1
Amdhd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391093,359,200 - 93,375,973 (-)NCBIGRCm39mm39
GRCm381093,523,338 - 93,540,111 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1093,523,338 - 93,540,033 (-)EnsemblGRCm38mm10GRCm38
MGSCv371092,986,083 - 93,002,778 (-)NCBIGRCm37mm9NCBIm37
MGSCv361092,953,137 - 92,969,832 (-)NCBImm8
Celera1095,509,267 - 95,526,553 (-)NCBICelera
Cytogenetic Map10C2NCBI
Amdhd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0734,362,635 - 34,406,282 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl734,361,633 - 34,406,318 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0734,427,627 - 34,471,274 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4730,557,367 - 30,572,599 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1730,577,176 - 30,592,879 (-)NCBI
Celera725,143,208 - 25,186,848 (-)NCBICelera
Cytogenetic Map7q13NCBI
Amdhd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540532,283,413 - 32,308,230 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540532,281,726 - 32,308,230 (+)NCBIChiLan1.0ChiLan1.0
AMDHD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11296,923,879 - 96,946,507 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1296,923,879 - 96,946,507 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01293,534,881 - 93,557,762 (+)NCBIMhudiblu_PPA_v0panPan3
Amdhd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493650712,033,804 - 12,049,210 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AMDHD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl587,553,022 - 87,569,305 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1587,551,887 - 87,569,271 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2591,755,963 - 91,765,895 (-)NCBISscrofa10.2Sscrofa10.2susScr3
AMDHD1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11191,319,330 - 91,341,466 (+)NCBI
ChlSab1.1 Ensembl1191,319,409 - 91,341,559 (+)Ensembl
Amdhd1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475011,352,368 - 11,377,329 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 3 13 6 6 6 6 6 6
Low 2 5 9 6 2 6 8 4
Below cutoff 4

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000010335   ⟹   ENSCAFP00000009582
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1535,692,210 - 35,698,835 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000010343   ⟹   ENSCAFP00000009589
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1535,692,161 - 35,760,978 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000084249   ⟹   ENSCAFP00000057085
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1535,692,161 - 35,712,720 (+)Ensembl
RefSeq Acc Id: XM_022427686   ⟹   XP_022283394
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11535,741,190 - 35,761,848 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_022283394   ⟸   XM_022427686
- Sequence:
RefSeq Acc Id: ENSCAFP00000057085   ⟸   ENSCAFT00000084249
RefSeq Acc Id: ENSCAFP00000009582   ⟸   ENSCAFT00000010335
RefSeq Acc Id: ENSCAFP00000009589   ⟸   ENSCAFT00000010343
Protein Domains
Sm


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000006406 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000009582 UniProtKB/TrEMBL
  ENSCAFP00000009589 UniProtKB/TrEMBL
  ENSCAFP00000057085 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000010335 UniProtKB/TrEMBL
  ENSCAFT00000010343 UniProtKB/TrEMBL
  ENSCAFT00000084249 UniProtKB/TrEMBL
InterPro Amidohydro-rel UniProtKB/TrEMBL
  HutI UniProtKB/TrEMBL
  Lsm6/sSmF UniProtKB/TrEMBL
  LSM_dom_euk/arc UniProtKB/TrEMBL
  LSM_dom_sf UniProtKB/TrEMBL
  Metal-dep_hydrolase_composite UniProtKB/TrEMBL
  Metal_Hydrolase UniProtKB/TrEMBL
  Sm_F UniProtKB/TrEMBL
NCBI Gene AMDHD1 ENTREZGENE
PANTHER PTHR11021 UniProtKB/TrEMBL
  PTHR42752 UniProtKB/TrEMBL
Pfam Amidohydro_1 UniProtKB/TrEMBL
  LSM UniProtKB/TrEMBL
PIRSF snRNP_SmF UniProtKB/TrEMBL
SMART SM00651 UniProtKB/TrEMBL
Superfamily-SCOP SSF50182 UniProtKB/TrEMBL
  SSF51338 UniProtKB/TrEMBL
  SSF51556 UniProtKB/TrEMBL
TIGRFAMs hutI UniProtKB/TrEMBL
UniProt A0A5F4CUF4_CANLF UniProtKB/TrEMBL
  F1Q0L2_CANLF UniProtKB/TrEMBL
  F1Q0L5_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:54193 ENTREZGENE