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Gene: Amdhd1 (amidohydrolase domain containing 1) Chinchilla lanigera

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Symbol:

Amdhd1

Name:

amidohydrolase domain containing 1

RGD ID:

8789554

Description:

PARTICIPATES IN histidine metabolic pathway; histidinemia pathway

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

probable imidazolonepropionase

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955405	32,283,413 - 32,308,230 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955405	32,281,726 - 32,308,230 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

histidine metabolic pathway (ISO)

histidinemia pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Amdhd1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955405	32,283,413 - 32,308,230 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955405	32,281,726 - 32,308,230 (+)	NCBI	ChiLan1.0	ChiLan1.0

AMDHD1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	95,943,331 - 95,968,720 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	95,943,331 - 95,968,720 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	96,337,109 - 96,362,498 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	94,861,202 - 94,886,500 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	12	96,005,967 - 96,028,689 (+)	NCBI		Celera
Cytogenetic Map	12	q23.1	NCBI
HuRef	12	93,401,507 - 93,424,233 (+)	NCBI		HuRef
CHM1_1	12	96,302,439 - 96,327,344 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	95,919,901 - 95,942,718 (+)	NCBI		T2T-CHM13v2.0

Amdhd1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	93,359,200 - 93,375,973 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	93,359,200 - 93,375,895 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	93,523,338 - 93,540,111 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	93,523,338 - 93,540,033 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	92,986,083 - 93,002,778 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	92,953,137 - 92,969,832 (-)	NCBI		MGSCv36	mm8
Celera	10	95,509,267 - 95,526,553 (-)	NCBI		Celera
Cytogenetic Map	10	C2	NCBI
cM Map	10	48.54	NCBI

Amdhd1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	29,930,966 - 29,946,199 (-)	NCBI		GRCr8
mRatBN7.2	7	28,043,923 - 28,059,156 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	28,043,716 - 28,059,156 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	30,034,284 - 30,049,520 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	32,196,501 - 32,211,738 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	31,971,373 - 31,986,628 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	34,362,635 - 34,406,282 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	34,361,633 - 34,406,318 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	34,427,627 - 34,471,274 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	30,557,367 - 30,572,599 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	30,577,176 - 30,592,879 (-)	NCBI
Celera	7	25,143,208 - 25,186,848 (-)	NCBI		Celera
Cytogenetic Map	7	q13	NCBI

AMDHD1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	104,016,375 - 104,039,599 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	104,012,765 - 104,035,989 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	93,534,881 - 93,557,762 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	96,923,879 - 96,946,507 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	96,923,879 - 96,946,507 (+)	Ensembl	panpan1.1		panPan2

AMDHD1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	35,741,190 - 35,761,848 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	35,692,161 - 35,760,978 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	36,132,469 - 36,148,396 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	36,411,148 - 36,426,868 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	36,410,952 - 36,427,134 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	35,684,044 - 35,699,752 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	35,778,577 - 35,794,280 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	36,041,752 - 36,057,471 (+)	NCBI		UU_Cfam_GSD_1.0

Amdhd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	24,185,003 - 24,201,632 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936507	12,033,797 - 12,050,118 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936507	12,033,804 - 12,049,210 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

AMDHD1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	87,551,913 - 87,569,305 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	87,551,887 - 87,569,271 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	91,755,963 - 91,765,895 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

AMDHD1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	91,319,330 - 91,341,466 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	91,319,409 - 91,341,559 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	153,787,157 - 153,810,144 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Amdhd1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624750	11,352,368 - 11,377,694 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624750	11,352,368 - 11,377,329 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005374693	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01005331	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01005332	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01005333	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01200165	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000015861 ⟹ ENSCLAP00000015699

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955405	32,283,413 - 32,308,230 (+)	Ensembl

RefSeq Acc Id:

XM_005374693 ⟹ XP_005374750

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955405	32,281,726 - 32,308,230 (+)	NCBI

Sequence:

show sequence

ATGGAGACCCCTGATCCTGCACTGGAACCTCCAAAACCCACCTTGGACAGTACCGGGAGGAGCG
GCTCTGAGCTGAGTCCTTGGGTGGTGTGCAGACACCAGAGCCGGCACTTTTTTGTTTACCTGAA
AGCCAGGAGCTACTGGGTCCTTGGCCTGCCCGATGGCCACCTCTCAGGTCAGCAGCAGAGCACA
GTCTCTGCTGGGCAAGAAGTGCCTCCGCCGTCTTTATCTGTCACTCAAGCCCCGCGCAGCGTGC
CCGCTAGATATGGACCGGACCGGGCGAGTGCCGTCACCGAGAGTCCAGCAAACCCCAGCGCCTC
CGAGCCCCCTGCCGGGCAGGAGCGGCCGAGGCAGCACACGTCTTCCTTAGGGGAAGCTGCCTCC
TCCCGCGGCCCGCCGGGGCCTGCGGCTTCCCGCTGCGGCGGCCCAGGGCCCGGGGACCCGCGGC
TCCCACCCGCTTTACCTCCGCGAGTTCGGGTCCCGGAGGCCTCGTTCCAATCTCTCCCGAGCAG
GCGCCCACGGTGCCCTCAGTCGGCTCTATCCGGCCCCGGGCCCCGTCCCTTTCATCCTGGGGGC
GCACTGGGAGCGCATCCTACAGCGGATCGGGCCAACCGAAGAGTGCGCGGGACCCGCGTCCGTG
ATGGGTTTATAGAAGCAATTGGCCCTGCTGATGCTATCCAAAAACAATTTTCTGAAGCAACTTT
TGAAGAAATAATTGACTGCTCTGGAAAATGTATCCTACCAGGTCTGGTGGATGCGCACACACAC
CCCGTGTGGGCTGGAGAAAGAGTTCACGAGTTTGCGATGAAGTTGGCAGGAGCCACGTACATGG
ACATCCACCAGGCCGGAGGGGGGATCAACTTCACCGTGGAGCGCACCCGCCAGGCCTCGGAGGA
GGAGCTGTTCTGCTCCTTGCAGCAGCGGCTGCAGTGCATGCTGAGGGCTGGCACCACGCTGGTG
GAGTGCAAGAGCGGCTACGGCCTAGCCCTGAGTGATGAGCTCAAGATGCTGCGAGTGATTGAGC
GCGCCAGGCGGGAGCTGCCAGTGGGTATCTCGGCCACTTACTGCGGGGCTCACTCGGTGCCCAG
AGGAAAGACTGCTCTGGAAGCTGCTGATGACATCATCAATAACCACCTCCCAAAGCTGAAGGAA
CTTGGCAGAAACGGGGAAATGCACGTCGACAACATAGATGTGTTCTGTGAGGAGGGCGTCTTTG
ACCTGGATTCTACCAGAAGGATTCTCCAAAGCGGAAAAGAGATGGGGTTGCAGATTAACTTCCA
TGGCGATGAGCTGCATCCCATGAAGGCTGCTGAGCTCGGAGCAGAGCTGGGAGCCCGGGCAGTG
AGCCACCTGGAGGAGGTGAGCGACAAAGGCATCGCTGCCATGGCCACGGCAGGGTGCTCCGCGG
TCCTGCTGCCCACCACGGCCTACATGCTGAGACTTAAGCAGCCGCGAGCCAGGAAGATGTTGGA
TGAAGGGGTAATAGTTGCTCTGGGCAGCGACTTCAACCCGAACGCATACTGCTTTTCCATGCCA
ATGGTCATGCACCTGGCCTGTGTGAACATGCGAATGTCCATGCCCGAGGCCTTGGCTGCTGCCA
CCATCAACGCGGCTTATGCACTGGGAAAGTCCCACACGCATGGATCGTTGGAAGTTGGCAAACA
GGGGGATTTCATTATCATCAATGCATCCAGATGGGAGCATTTGATTTACCAATTTGGAGGCCAT
CATGAATTAATTGAATATGTTATCATTAAAGGAAAAGTCATCTATAAAAAATGATAGAACTGGA
AGGAAAGAGAAGATATTTCCACTGCATCAAATAAGTCAGTACAGCTATTACACCTTTTGAGGTG
TTTTAAATAAGTTAAAATTTTTAGTGGTTTACCACAACTGTGCCACTTTAAAGGTATTTCAATT
GTTTTGTTAATTCAGTTAACAAAACTCAAGGAGTTGATTTATTTGAACATGAACATGAACATAT
AAACAAGTAAGTCATTATTGTCAAATCATTAAATTGTTTCACAAAGATTGTTTACAAAATGTTC
TGAAGATTAATATGATGGGATATCATAAAAATGCCTTTGTGGGAAAACCAGACTTGGCTTGAAA
TTTTTTTTAGTTTTCACATCTCAATTCTTAACTTTTAGGCTATATTTAGTGACCACTGGGGAAT
GGAAGGAAATCTGGATGATATGCCCCGAATTAAGCTAAATATACCTTTTTCTAATAAGCAAATC
ACATTTTCTTTTCAATGCTTTTCAGATGAATTAATGTATGTGGGGATGTCCATTTCTAATGTCC
TTTTATTCCTAGGAATGAAACTTCATAGCAGAATTGAAGACTTGTCACTTTACACAGAGGTGTG
GGACCATTTTGATAATAGATGCATTTAATAAACTCAAATTATGTAATTTTTAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005374750	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000015699.1

RefSeq Acc Id:

XP_005374750 ⟸ XM_005374693

- Sequence:

show sequence

METPDPALEPPKPTLDSTGRSGSELSPWVVCRHQSRHFFVYLKARSYWVLGLPDGHLSGQQQST
VSAGQEVPPPSLSVTQAPRSVPARYGPDRASAVTESPANPSASEPPAGQERPRQHTSSLGEAAS
SRGPPGPAASRCGGPGPGDPRLPPALPPRVRVPEASFQSLPSRRPRCPQSALSGPGPRPFHPGG
ALGAHPTADRANRRVRGTRVRDGFIEAIGPADAIQKQFSEATFEEIIDCSGKCILPGLVDAHTH
PVWAGERVHEFAMKLAGATYMDIHQAGGGINFTVERTRQASEEELFCSLQQRLQCMLRAGTTLV
ECKSGYGLALSDELKMLRVIERARRELPVGISATYCGAHSVPRGKTALEAADDIINNHLPKLKE
LGRNGEMHVDNIDVFCEEGVFDLDSTRRILQSGKEMGLQINFHGDELHPMKAAELGAELGARAV
SHLEEVSDKGIAAMATAGCSAVLLPTTAYMLRLKQPRARKMLDEGVIVALGSDFNPNAYCFSMP
MVMHLACVNMRMSMPEALAAATINAAYALGKSHTHGSLEVGKQGDFIIINASRWEHLIYQFGGH
HELIEYVIIKGKVIYKK

hide sequence

Ensembl Acc Id:

ENSCLAP00000015699 ⟸ ENSCLAT00000015861

Protein Domains

Amidohydrolase-related

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000010790	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000015861.1	UniProtKB/TrEMBL
Gene3D-CATH	2.30.40.10	UniProtKB/TrEMBL
	Metal-dependent hydrolases	UniProtKB/TrEMBL
InterPro	Amidohydro-rel	UniProtKB/TrEMBL
	HutI	UniProtKB/TrEMBL
	Metal-dep_hydrolase_composite	UniProtKB/TrEMBL
	Metal_Hydrolase	UniProtKB/TrEMBL
NCBI Gene	Amdhd1	ENTREZGENE
PANTHER	IMIDAZOLONEPROPIONASE-RELATED	UniProtKB/TrEMBL
	PTHR42752	UniProtKB/TrEMBL
Pfam	Amidohydro_1	UniProtKB/TrEMBL
Superfamily-SCOP	SSF51338	UniProtKB/TrEMBL
	SSF51556	UniProtKB/TrEMBL
UniProt	A0A8C2VHT9_CHILA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Annotations - SMPDB