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myeloid dendritic cell activation - Ontology Report - Rat Genome Database

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ONTOLOGY REPORT - ANNOTATIONS

Term:myeloid dendritic cell activation
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Accession:GO:0001773 term browser browse the term
Definition:The change in morphology and behavior of a dendritic cell resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor.

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myeloid dendritic cell activation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd244 CD244 molecule involved_in ISO (PMID:25643613) RGD PMID:25643613 NCBI chr13:84,051,339...84,082,864
Ensembl chr13:84,052,493...84,074,492 		JBrowse link
G Cd99 CD99 molecule (Xg blood group) acts_upstream_of_or_within ISO (PMID:14970179) RGD PMID:14970179 NCBI chr20:54,418,239...54,422,882 JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO (PMID:19890330) RGD PMID:19890330 NCBI chr12:11,009,236...11,015,941
Ensembl chr12:5,901,586...5,978,565
Ensembl chr16:5,901,586...5,978,565 		JBrowse link
G Pilrb1 paired immunoglobin-like type 2 receptor beta 1 acts_upstream_of_or_within ISO (PMID:14970179) RGD PMID:14970179 NCBI chr12:24,220,304...24,239,811
Ensembl chr12:18,516,156...18,525,346 		JBrowse link
G Pycard PYD and CARD domain containing involved_in ISO
IEA 		(PMID:22732093)
GO_REF:0000107 		RGD
Ensembl		 PMID:22732093 GO_REF:0000107 NCBI chr 1:192,032,124...192,033,419
Ensembl chr 1:182,601,174...182,602,955 		JBrowse link
G Stard7 StAR-related lipid transfer domain containing 7 acts_upstream_of_or_within ISO
IEA 		MGI:4433666 (PMID:25980009)
GO_REF:0000107 		RGD
Ensembl		 PMID:25980009 GO_REF:0000107 NCBI chr 3:114,487,161...114,515,828
Ensembl chr 3:114,485,600...114,515,813 		JBrowse link
Langerhans cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Itgb6 integrin subunit beta 6 acts_upstream_of_or_within ISO
IEA 		MGI:1338035 (PMID:19118215)
GO_REF:0000107 		RGD
Ensembl		 PMID:19118215 GO_REF:0000107 NCBI chr 3:65,454,964...65,579,179
Ensembl chr 3:45,048,044...45,121,671 		JBrowse link
G Itgb8 integrin subunit beta 8 acts_upstream_of_or_within ISO MGI:96615 (PMID:19118215) RGD PMID:19118215 NCBI chr 6:146,267,982...146,351,245
Ensembl chr 6:140,127,203...140,208,476 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within ISO
IEA 		MGI:3719583 (PMID:17938236)
GO_REF:0000107 		RGD
Ensembl		 PMID:17938236 GO_REF:0000107 NCBI chr 1:90,324,312...90,340,627
Ensembl chr 1:81,196,532...81,212,847 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 acts_upstream_of_or_within ISO
IEA 		MGI:2384513 (PMID:17938236)
GO_REF:0000107 		RGD
Ensembl		 PMID:17938236 GO_REF:0000107 NCBI chr 8:124,672,677...124,761,741
Ensembl chr 8:115,794,537...115,883,228 		JBrowse link
myeloid dendritic cell activation involved in immune response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dock2 dedicator of cytokinesis 2 involved_in ISO
IEA 		(PMID:21892172)
GO_REF:0000107 		RGD
Ensembl		 PMID:21892172 GO_REF:0000107 NCBI chr10:19,331,412...19,748,987
Ensembl chr10:18,827,239...19,244,808 		JBrowse link
G Pycard PYD and CARD domain containing involved_in ISO
IEA 		(PMID:21892172)
GO_REF:0000107 		RGD
Ensembl		 PMID:21892172 GO_REF:0000107 NCBI chr 1:192,032,124...192,033,419
Ensembl chr 1:182,601,174...182,602,955 		JBrowse link
G Slamf1 signaling lymphocytic activation molecule family member 1 involved_in ISO
IEA 		(PMID:16317102)
GO_REF:0000107 		RGD
Ensembl		 PMID:16317102 GO_REF:0000107 NCBI chr13:86,802,708...86,837,890
Ensembl chr13:84,270,316...84,305,497 		JBrowse link
myeloid dendritic cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Batf basic leucine zipper ATF-like transcription factor involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:22992524) 		UniProt
Ensembl
RGD		 PMID:22992524 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:111,084,717...111,107,052
Ensembl chr 6:105,353,715...105,376,051 		JBrowse link
G Batf2 basic leucine zipper ATF-like transcription factor 2 involved_in ISO (PMID:22992524) RGD PMID:22992524 NCBI chr 1:212,897,076...212,905,740
Ensembl chr 1:203,468,097...203,475,889 		JBrowse link
G Batf3 basic leucine zipper ATF-like transcription factor 3 involved_in
acts_upstream_of_or_within 		ISS
ISO 		GO_REF:0000024
(PMID:19008445)
MGI:3817232 (PMID:23913046) 		UniProt
RGD		 PMID:19008445 PMID:23913046 GO_REF:0000024 NCBI chr13:105,220,782...105,232,365
Ensembl chr13:102,689,657...102,701,139 		JBrowse link
G Camk4 calcium/calmodulin-dependent protein kinase IV involved_in ISO
ISS
IEA 		(PMID:17909078)
GO_REF:0000024
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:17909078 GO_REF:0000024 GO_REF:0000107 NCBI chr18:24,857,152...25,076,054
Ensembl chr18:24,585,269...24,802,487 		JBrowse link
G Cd86 CD86 molecule IEP RGD PMID:21039614 RGD:4892198 NCBI chr11:77,647,565...77,706,178
Ensembl chr11:64,163,828...64,200,818 		JBrowse link
G Csf2 colony stimulating factor 2 involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:16116184)
GO_REF:0000107
(PMID:12021780) 		RGD
Ensembl		 PMID:12021780 PMID:16116184 GO_REF:0000107 NCBI chr10:38,887,692...38,889,673
Ensembl chr10:38,386,945...38,389,199 		JBrowse link
G Dcstamp dendrocyte expressed seven transmembrane protein involved_in ISO (PMID:17713547) RGD PMID:17713547 NCBI chr 7:72,692,364...72,706,983
Ensembl chr 7:70,807,581...70,822,078 		JBrowse link
G Dhrs2 dehydrogenase/reductase 2 involved_in ISO
IEA 		(PMID:11944995)
GO_REF:0000107 		RGD
Ensembl		 PMID:11944995 GO_REF:0000107 NCBI chr15:32,658,855...32,673,591
Ensembl chr15:28,688,940...28,703,644 		JBrowse link
G Gimap5 GTPase, IMAP family member 5 IMP RGD PMID:15922563 RGD:2303773 NCBI chr 4:79,025,151...79,031,917
Ensembl chr 4:77,687,564...77,703,086 		JBrowse link
G Il4 interleukin 4 involved_in ISO (PMID:16116184) RGD PMID:16116184 NCBI chr10:38,272,003...38,277,549
Ensembl chr10:37,771,203...37,776,750 		JBrowse link
G Irf4 interferon regulatory factor 4 acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:2387941 (PMID:15184678)
GO_REF:0000107
(PMID:22992524) 		RGD
Ensembl		 PMID:15184678 PMID:22992524 GO_REF:0000107 NCBI chr17:33,930,460...33,948,842
Ensembl chr17:33,721,811...33,740,070 		JBrowse link
G Ltbr lymphotoxin beta receptor acts_upstream_of_or_within ISO MGI:2384140 (PMID:23913046) RGD PMID:23913046 NCBI chr 4:159,795,115...159,801,571
Ensembl chr 4:158,108,886...158,121,539 		JBrowse link
G Notch2 notch receptor 2 acts_upstream_of_or_within ISO
IEA 		MGI:3617328 (PMID:23913046)
GO_REF:0000107 		RGD
Ensembl		 PMID:23913046 GO_REF:0000107 NCBI chr 2:188,299,336...188,432,823
Ensembl chr 2:185,610,589...185,744,088 		JBrowse link
G Pirb paired Ig-like receptor B acts_upstream_of_or_within ISO MGI:2180757 (PMID:12021780) RGD PMID:12021780 NCBI chr 1:74,414,556...74,433,015
Ensembl chr 1:65,499,195...65,506,666 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO
IEA 		MGI:2449306 (PMID:23913046)
GO_REF:0000107 		RGD
Ensembl		 PMID:23913046 GO_REF:0000107 NCBI chr 6:109,054,160...109,106,191
Ensembl chr 6:103,323,120...103,371,650 		JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region acts_upstream_of_or_within ISO MGI:3583755 (PMID:23913046) RGD PMID:23913046 NCBI chr14:61,551,366...61,736,220
Ensembl chr14:57,338,507...57,523,353 		JBrowse link
G Relb RELB proto-oncogene, NF-kB subunit acts_upstream_of_or_within ISO
IEA 		MGI:2179544 (PMID:14499111), (PMID:7845467)
GO_REF:0000107 		RGD
Ensembl		 PMID:7845467 PMID:14499111 GO_REF:0000107 NCBI chr 1:88,385,717...88,413,380
Ensembl chr 1:79,257,725...79,285,507 		JBrowse link
G Spi1 Spi-1 proto-oncogene acts_upstream_of_or_within ISO
IEA 		MGI:1930970 (PMID:10648399)
GO_REF:0000107 		RGD
Ensembl		 PMID:10648399 GO_REF:0000107 NCBI chr 3:97,529,509...97,548,204
Ensembl chr 3:77,073,012...77,092,393 		JBrowse link
G Tnfsf9 TNF superfamily member 9 IDA RGD PMID:18687212 RGD:2317345 NCBI chr 9:2,031,011...2,033,345
Ensembl chr 9:1,944,017...1,946,345 		JBrowse link
G Traf6 TNF receptor associated factor 6 acts_upstream_of_or_within ISO MGI:2678775 (PMID:14499111) RGD PMID:14499111 NCBI chr 3:108,418,537...108,443,330
Ensembl chr 3:87,963,514...87,983,507 		JBrowse link
G Ubd ubiquitin D involved_in ISO
ISS 		(PMID:19028597)
GO_REF:0000024 		RGD
UniProt		 PMID:19028597 GO_REF:0000024 NCBI chr20:1,390,734...1,392,685
Ensembl chr20:1,385,864...1,408,639
Ensembl chr20:1,385,864...1,408,639 		JBrowse link
negative regulation of myeloid dendritic cell activation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd37 CD37 molecule acts_upstream_of_or_within ISO MGI:1350360 (PMID:20709950) RGD PMID:20709950 NCBI chr 1:95,719,171...95,724,662
Ensembl chr 1:95,719,190...95,724,648 		JBrowse link
G Havcr2 hepatitis A virus cellular receptor 2 involved_in ISO (PMID:22842346) RGD PMID:22842346 NCBI chr10:30,882,484...30,914,018
Ensembl chr10:30,882,606...30,909,137 		JBrowse link
G Il10 interleukin 10 acts_upstream_of_or_within ISO
IEA 		MGI:1857199 (PMID:15240714)
GO_REF:0000107 		RGD
Ensembl		 PMID:15240714 GO_REF:0000107 NCBI chr13:45,024,921...45,029,586
Ensembl chr13:42,472,839...42,477,313 		JBrowse link
G Tspan32 tetraspanin 32 acts_upstream_of_or_within ISO MGI:88330 (PMID:20709950) RGD PMID:20709950 NCBI chr 1:198,190,128...198,204,447
Ensembl chr 1:198,190,164...198,204,445 		JBrowse link
positive regulation of myeloid dendritic cell activation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec4d C-type lectin domain family 4, member D involved_in ISS
ISO 		GO_REF:0000024
(PMID:23602766) 		UniProt
RGD		 PMID:23602766 GO_REF:0000024 NCBI chr 4:158,275,287...158,286,978
Ensembl chr 4:156,589,792...156,598,848 		JBrowse link
G Klrk1 killer cell lectin like receptor K1 IDA RGD PMID:17369187 RGD:9685185 NCBI chr 4:163,079,887...163,092,434
Ensembl chr 4:163,081,927...163,092,459 		JBrowse link
regulation of myeloid dendritic cell activation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Flt3lg Fms related receptor tyrosine kinase 3 ligand acts_upstream_of_or_within ISO MGI:2158499 (PMID:23913046) RGD PMID:23913046 NCBI chr 1:104,751,518...104,756,925
Ensembl chr 1:95,609,370...95,620,463 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    immune system process 3132
      leukocyte activation 1084
        myeloid leukocyte activation 300
          myeloid dendritic cell activation 40
            myeloid dendritic cell activation involved in immune response + 3
            myeloid dendritic cell differentiation + 25
            negative regulation of myeloid dendritic cell activation 4
            positive regulation of myeloid dendritic cell activation 2
            regulation of myeloid dendritic cell activation + 7
Path 2
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      cell activation 1242
        leukocyte activation 1084
          myeloid leukocyte activation 300
            myeloid dendritic cell activation 40
              myeloid dendritic cell activation involved in immune response + 3
              myeloid dendritic cell differentiation + 25
              negative regulation of myeloid dendritic cell activation 4
              positive regulation of myeloid dendritic cell activation 2
              regulation of myeloid dendritic cell activation + 7
paths to the root