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ONTOLOGY REPORT - ANNOTATIONS


Term:myeloid dendritic cell differentiation
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Accession:GO:0043011 term browser browse the term
Definition:The process in which a monocyte acquires the specialized features of a dendritic cell, an immunocompetent cell of the lymphoid and hemopoietic systems and skin.
Synonyms:xref: Wikipedia:Dendritic_cell



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myeloid dendritic cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Batf basic leucine zipper ATF-like transcription factor involved_in ISS
ISO
GO_REF:0000024
(MGI:5441724|PMID:22992524)
UniProt
RGD
PMID:22992524 GO_REF:0000024 MGI:5441724 NCBI chr 6:105,353,715...105,376,051
Ensembl chr 6:105,353,715...105,376,051
JBrowse link
G Batf2 basic leucine zipper ATF-like transcription factor 2 involved_in ISO (MGI:5441724|PMID:22992524) RGD PMID:22992524 MGI:5441724 NCBI chr 1:203,467,291...203,479,428
Ensembl chr 1:203,468,097...203,475,889
JBrowse link
G Batf3 basic leucine zipper ATF-like transcription factor 3 involved_in
acts_upstream_of_or_within
ISS
ISO
IEA
GO_REF:0000024
(MGI:3815335|PMID:19008445)
MGI:3817232 (MGI:5562510|PMID:23913046)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:19008445 PMID:23913046 GO_REF:0000024 GO_REF:0000107 MGI:3815335 MGI:5562510 NCBI chr13:102,689,657...102,701,241
Ensembl chr13:102,689,657...102,701,139
JBrowse link
G Camk4 calcium/calmodulin-dependent protein kinase IV involved_in ISO
ISS
(PMID:17909078)
GO_REF:0000024
RGD
UniProt
PMID:17909078 GO_REF:0000024 NCBI chr18:24,582,988...24,811,918
Ensembl chr18:24,585,269...24,802,487
JBrowse link
G Cd86 CD86 molecule IEP RGD PMID:21039614 RGD:4892198 NCBI chr11:64,142,193...64,200,816
Ensembl chr11:64,163,828...64,200,818
JBrowse link
G Csf2 colony stimulating factor 2 involved_in
acts_upstream_of_or_within
ISO (PMID:16116184)
(MGI:2180258|PMID:12021780)
RGD PMID:12021780 PMID:16116184 MGI:2180258 NCBI chr10:38,386,945...38,388,926
Ensembl chr10:38,386,945...38,389,199
JBrowse link
G Dcstamp dendrocyte expressed seven transmembrane protein involved_in ISO (MGI:5319610|PMID:17713547) RGD PMID:17713547 MGI:5319610 NCBI chr 7:70,807,455...70,822,067
Ensembl chr 7:70,807,581...70,822,078
JBrowse link
G Dhrs2 dehydrogenase/reductase 2 involved_in ISO (PMID:11944995) RGD PMID:11944995 NCBI chr15:28,688,881...28,703,646
Ensembl chr15:28,688,940...28,703,644
JBrowse link
G Gimap5 GTPase, IMAP family member 5 IMP RGD PMID:15922563 RGD:2303773 NCBI chr 4:77,693,417...77,701,025
Ensembl chr 4:77,687,564...77,703,086
JBrowse link
G Il4 interleukin 4 involved_in IBA
ISO
PMID:21873635
(PMID:16116184)
RGD PMID:16116184 PMID:21873635 RGD:13792537 NCBI chr10:37,771,203...37,776,750
Ensembl chr10:37,771,203...37,776,750
JBrowse link
G Irf4 interferon regulatory factor 4 involved_in
acts_upstream_of_or_within
ISO (MGI:5441724|PMID:22992524)
MGI:2387941 (MGI:3045824|PMID:15184678)
RGD PMID:15184678 PMID:22992524 MGI:3045824 MGI:5441724 NCBI chr17:33,721,800...33,742,570
Ensembl chr17:33,721,811...33,740,070
JBrowse link
G Ltbr lymphotoxin beta receptor acts_upstream_of_or_within ISO MGI:2384140 (MGI:5562510|PMID:23913046) RGD PMID:23913046 MGI:5562510 NCBI chr 4:158,108,884...158,115,339
Ensembl chr 4:158,108,886...158,121,539
JBrowse link
G Notch2 notch receptor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3617328 (MGI:5562510|PMID:23913046)
Ensembl
RGD
PMID:23913046 GO_REF:0000107 MGI:5562510 NCBI chr 2:185,610,594...185,744,088
Ensembl chr 2:185,610,589...185,744,088
JBrowse link
G Pirb paired Ig-like receptor B acts_upstream_of_or_within ISO MGI:2180757 (MGI:2180258|PMID:12021780) RGD PMID:12021780 MGI:2180258
G Psen1 presenilin 1 acts_upstream_of_or_within ISO MGI:2449306 (MGI:5562510|PMID:23913046) RGD PMID:23913046 MGI:5562510 NCBI chr 6:103,323,014...103,375,088
Ensembl chr 6:103,323,120...103,371,650
JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region acts_upstream_of_or_within ISO MGI:3583755 (MGI:5562510|PMID:23913046) RGD PMID:23913046 MGI:5562510 NCBI chr14:57,338,493...57,523,330
Ensembl chr14:57,338,507...57,523,353
JBrowse link
G Relb RELB proto-oncogene, NF-kB subunit acts_upstream_of_or_within ISO MGI:2179544 (MGI:2677080|PMID:14499111), (MGI:70877|PMID:7845467) RGD PMID:7845467 PMID:14499111 MGI:2677080 MGI:70877 NCBI chr 1:79,257,738...79,285,490
Ensembl chr 1:79,257,725...79,285,507
JBrowse link
G Spi1 Spi-1 proto-oncogene acts_upstream_of_or_within ISO MGI:1930970 (MGI:1352309|PMID:10648399) RGD PMID:10648399 MGI:1352309 NCBI chr 3:77,059,744...77,093,730
Ensembl chr 3:77,073,012...77,092,393
JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within ISO MGI:3719583 (MGI:3760597|PMID:17938236) RGD PMID:17938236 MGI:3760597 NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 acts_upstream_of_or_within ISO MGI:2384513 (MGI:3760597|PMID:17938236) RGD PMID:17938236 MGI:3760597 NCBI chr 8:115,794,537...115,883,615
Ensembl chr 8:115,794,537...115,883,228
JBrowse link
G Tnfsf9 TNF superfamily member 9 IDA RGD PMID:18687212 RGD:2317345 NCBI chr 9:1,944,017...1,946,351
Ensembl chr 9:1,944,017...1,946,345
JBrowse link
G Traf6 TNF receptor associated factor 6 acts_upstream_of_or_within ISO MGI:2678775 (MGI:2677080|PMID:14499111) RGD PMID:14499111 MGI:2677080 NCBI chr 3:87,963,517...87,988,316
Ensembl chr 3:87,963,514...87,983,507
JBrowse link
G Ubd ubiquitin D involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:19028597)
Ensembl
UniProt
RGD
PMID:19028597 GO_REF:0000024 GO_REF:0000107 NCBI chr20:1,385,487...1,387,438
Ensembl chr20:1,385,864...1,408,639
JBrowse link
Langerhans cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Itgb6 integrin subunit beta 6 acts_upstream_of_or_within ISO MGI:1338035 (MGI:3836488|PMID:19118215) RGD PMID:19118215 MGI:3836488 NCBI chr 3:45,046,295...45,170,532
Ensembl chr 3:45,048,044...45,121,671
JBrowse link
G Itgb8 integrin subunit beta 8 acts_upstream_of_or_within ISO MGI:96615 (MGI:3836488|PMID:19118215) RGD PMID:19118215 MGI:3836488 NCBI chr 6:140,124,997...140,208,254
Ensembl chr 6:140,127,203...140,208,476
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19497
    immune system process 2829
      leukocyte activation 1079
        myeloid leukocyte activation 267
          myeloid dendritic cell activation 39
            myeloid dendritic cell differentiation 25
              Langerhans cell differentiation 2
              myeloid dendritic cell differentiation involved in immune response 0
Path 2
Term Annotations click to browse term
  biological_process 19497
    developmental process 6889
      anatomical structure development 6306
        multicellular organism development 5727
          system development 5373
            animal organ development 4130
              hematopoietic or lymphoid organ development 1038
                hemopoiesis 986
                  leukocyte differentiation 617
                    mononuclear cell differentiation 479
                      dendritic cell differentiation 50
                        myeloid dendritic cell differentiation 25
                          Langerhans cell differentiation 2
                          myeloid dendritic cell differentiation involved in immune response 0
paths to the root