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ONTOLOGY REPORT - ANNOTATIONS


Term:indole-3-carboxylic acid
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Accession:CHEBI:24809 term browser browse the term
Definition:An indole-3-carboxylic acid carrying a carboxy group at position 3.
Synonyms:related_synonym: 1H-INDOLE-3-CARBOXYLIC ACID;   Formula=C9H7NO2;   InChI=1S/C9H7NO2/c11-9(12)7-5-10-8-4-2-1-3-6(7)8/h1-5,10H,(H,11,12);   InChIKey=KMAKOBLIOCQGJP-UHFFFAOYSA-N;   SMILES=OC(=O)c1c[nH]c2ccccc12
 alt_id: CHEBI:49657
 xref: Beilstein:129435 "Beilstein";   CAS:771-50-6 "ChemIDplus";   Gmelin:1875411 "Gmelin";   HMDB:HMDB0003320
 xref_mesh: MESH:C012382
 xref: PDBeChem:ICO;   PMID:1262308 "Europe PMC";   PMID:13905029 "Europe PMC";   PMID:16664264 "Europe PMC";   PMID:23116603 "Europe PMC";   PMID:4844607 "Europe PMC";   Reaxys:129435 "Reaxys"
 cyclic_relationship: is_conjugate_acid_of CHEBI:62448


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indole-3-carboxylic acid term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Col2a1 collagen type II alpha 1 chain JBrowse link 7 139,454,945 139,484,403 RGD:6480464
tropisetron term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccl3 C-C motif chemokine ligand 3 JBrowse link 10 70,869,516 70,871,066 RGD:6480464
G Cxcl1 C-X-C motif chemokine ligand 1 JBrowse link 14 18,743,678 18,745,457 RGD:6480464
G Cxcl2 C-X-C motif chemokine ligand 2 JBrowse link 14 18,731,346 18,733,391 RGD:6480464
G Hmox1 heme oxygenase 1 JBrowse link 19 14,508,634 14,515,455 RGD:6480464
G Icam1 intercellular adhesion molecule 1 JBrowse link 8 22,035,287 22,047,049 RGD:6480464
G Il1b interleukin 1 beta JBrowse link 3 121,876,256 121,882,637 RGD:6480464
G Il2 interleukin 2 JBrowse link 2 123,847,150 123,851,854 RGD:6480464
G Il6 interleukin 6 JBrowse link 4 3,043,231 3,047,807 RGD:6480464
G Mpo myeloperoxidase JBrowse link 10 75,087,892 75,098,260 RGD:6480464
G Slc22a2 solute carrier family 22 member 2 JBrowse link 1 48,318,025 48,360,219 RGD:6480464
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19662
    role 19606
      biological role 19604
        biochemical role 19133
          metabolite 19101
            prokaryotic metabolite 18236
              bacterial metabolite 18236
                indole-3-carboxylic acid 12
                  1H-indole-3-carboxylate ester + 0
                  3-indole carboxylic acid glucuronide 0
                  4-O-(1H-indol-3-ylcarbonyl)ascaroside + 0
                  5-(6-O-malonyl-beta-D-glucosyloxy)-indole-3-carboxylic acid 0
                  6-(D-glucosyloxy)indole-3-carboxylic acid 0
                  D-glucosyl 6-hydroxyindole-3-carboxylate 0
                  D-glucosyl indole-3-carboxylate 0
                  methyl indole-3-carboxylate 0
                  tropisetron 11
Path 2
Term Annotations click to browse term
  CHEBI ontology 19662
    subatomic particle 19658
      composite particle 19658
        hadron 19658
          baryon 19658
            nucleon 19658
              atomic nucleus 19658
                atom 19658
                  main group element atom 19539
                    p-block element atom 19539
                      carbon group element atom 19422
                        carbon atom 19414
                          organic molecular entity 19414
                            organic molecule 19337
                              organic cyclic compound 19089
                                organic heterocyclic compound 18164
                                  organic heteropolycyclic compound 17427
                                    organic heterobicyclic compound 15905
                                      benzopyrrole 5756
                                        indoles 5531
                                          indolyl carboxylic acid 3172
                                            indol-3-yl carboxylic acid 3171
                                              indole-3-carboxylic acid 12
                                                1H-indole-3-carboxylate ester + 0
                                                3-indole carboxylic acid glucuronide 0
                                                4-O-(1H-indol-3-ylcarbonyl)ascaroside + 0
                                                5-(6-O-malonyl-beta-D-glucosyloxy)-indole-3-carboxylic acid 0
                                                6-(D-glucosyloxy)indole-3-carboxylic acid 0
                                                D-glucosyl 6-hydroxyindole-3-carboxylate 0
                                                D-glucosyl indole-3-carboxylate 0
                                                methyl indole-3-carboxylate 0
                                                tropisetron 11
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.