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ONTOLOGY REPORT - ANNOTATIONS

Term:pharyngeal system development
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Accession:GO:0060037 term browser browse the term
Definition:The process whose specific outcome is the progression of the pharyngeal system over time, from its formation to the mature structure. The pharyngeal system is a transient embryonic complex that is specific to vertebrates. It comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the structure it contributes to are forming: the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear.


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pharyngeal system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 acts_upstream_of_or_within ISO MGI:2386570|MGI:2651395 (PMID:17078885) RGD PMID:17078885 NCBI chr 3:42,978,558...43,097,892
Ensembl chr 3:42,978,561...43,098,241 		JBrowse link
G Bmp5 bone morphogenetic protein 5 involved_in ISO UniProtKB:P23359 (MGI:1332253|PMID:10079236) RGD PMID:10079236 MGI:1332253 NCBI chr 8:76,517,164...76,639,925
Ensembl chr 8:76,517,164...76,639,925 		JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in ISO UniProtKB:P49003 (MGI:1332253|PMID:10079236) RGD PMID:10079236 MGI:1332253 NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788 		JBrowse link
G Ece1 endothelin converting enzyme 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2158947 (PMID:12950083)		 Ensembl
RGD		 PMID:12950083 GO_REF:0000107 NCBI chr 5:150,077,679...150,179,375
Ensembl chr 5:150,077,644...150,179,371 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:102780|MGI:98493|MGI:99604 (PMID:21364285) RGD PMID:21364285 NCBI chr 5:4,863,501...5,101,483
Ensembl chr 5:4,955,543...5,101,483 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO MGI:102780|MGI:109344|MGI:98493 (PMID:21364285) RGD PMID:21364285 NCBI chr 1:244,584,477...244,590,578
Ensembl chr 1:244,584,652...244,590,359 		JBrowse link
G Foxi3 forkhead box I3 involved_in ISO (PMID:37041148)
(MGI:5559050|PMID:24650709), (MGI:7463349|PMID:37041148)		 RGD PMID:24650709 PMID:37041148 MGI:5559050 MGI:7463349 NCBI chr 4:102,933,487...102,937,655
Ensembl chr 4:102,933,409...102,937,655 		JBrowse link
G Gata3 GATA binding protein 3 involved_in ISO (MGI:3832106|PMID:18955134) RGD PMID:18955134 MGI:3832106 NCBI chr17:68,643,760...68,666,000
Ensembl chr17:68,643,873...68,665,391 		JBrowse link
G Hoxa2 homeobox A2 involved_in IEA
ISO		 GO_REF:0000107
(PMID:25889273)		 Ensembl
RGD		 PMID:25889273 GO_REF:0000107 NCBI chr 4:81,262,668...81,266,970
Ensembl chr 4:81,262,768...81,265,044 		JBrowse link
G Isl1 ISL LIM homeobox 1 involved_in ISO
IEA		 UniProtKB:Q02248 (MGI:3829137|PMID:17519333)
GO_REF:0000107		 RGD
Ensembl		 PMID:17519333 GO_REF:0000107 MGI:3829137 NCBI chr 2:48,079,412...48,090,704
Ensembl chr 2:48,080,522...48,095,584 		JBrowse link
G Nkx2-5 NK2 homeobox 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:97351 (PMID:11390666)		 Ensembl
RGD		 PMID:11390666 GO_REF:0000107 NCBI chr10:16,340,428...16,347,004
Ensembl chr10:16,344,159...16,346,934 		JBrowse link
G Nkx2-6 NK2 homeobox 6 involved_in
acts_upstream_of_or_within		 ISO (MGI:1195840|PMID:9486544), (MGI:1267297|PMID:9621431), (MGI:3828420|PMID:9545560)
MGI:97350 (PMID:11390666)		 RGD PMID:9486544 PMID:9545560 PMID:9621431 PMID:11390666 MGI:1195840 MGI:1267297 MGI:3828420 NCBI chr15:44,443,151...44,447,248
Ensembl chr15:44,443,101...44,447,247 		JBrowse link
G Nkx3-1 NK3 homeobox 1 involved_in ISO (MGI:1267297|PMID:9621431) RGD PMID:9621431 MGI:1267297 NCBI chr15:44,473,851...44,476,443
Ensembl chr15:44,473,851...44,476,441 		JBrowse link
G Plxna2 plexin A2 involved_in ISO (MGI:4355631|PMID:19666519) RGD PMID:19666519 MGI:4355631 NCBI chr13:106,163,103...106,358,979
Ensembl chr13:106,163,103...106,358,979 		JBrowse link
G Ptch1 patched 1 involved_in ISO (PMID:8681379), (PMID:8981943) RGD PMID:8681379 PMID:8981943 NCBI chr17:1,542,705...1,607,730
Ensembl chr17:1,542,877...1,607,333 		JBrowse link
G Ripply3 ripply transcriptional repressor 3 involved_in ISO (MGI:4879036|PMID:21177346) RGD PMID:21177346 MGI:4879036 NCBI chr11:33,648,471...33,656,587
Ensembl chr11:33,648,486...33,656,584 		JBrowse link
G Six1 SIX homeobox 1 involved_in
acts_upstream_of_or_within		 ISO (MGI:3624596|PMID:16530750)
MGI:109344|MGI:98493|MGI:99604 (PMID:21364285)		 RGD PMID:16530750 PMID:21364285 MGI:3624596 NCBI chr 6:91,746,739...91,751,975
Ensembl chr 6:91,746,739...91,751,975 		JBrowse link
G Six4 SIX homeobox 4 involved_in ISO (MGI:3624596|PMID:16530750) RGD PMID:16530750 MGI:3624596 NCBI chr 6:91,802,328...91,816,002
Ensembl chr 6:91,802,329...91,815,992 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:102780|MGI:109344|MGI:3046793|MGI:99604 (PMID:16141220), (PMID:21364285)
(MGI:4879036|PMID:21177346)
(PMID:14585638)		 UniProt
RGD		 PMID:14585638 PMID:16141220 PMID:21177346 PMID:21364285 GO_REF:0000024 MGI:4879036 NCBI chr11:82,409,275...82,419,058
Ensembl chr11:82,409,275...82,418,380 		JBrowse link
G Tbx2 T-box transcription factor 2 involved_in ISO (MGI:3487212|PMID:15459098) RGD PMID:15459098 MGI:3487212 NCBI chr10:70,679,670...70,688,868
Ensembl chr10:70,679,518...70,688,529 		JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2386570|MGI:2388050 (PMID:17078885)		 Ensembl
RGD		 PMID:17078885 GO_REF:0000107 NCBI chr 5:61,653,773...61,710,777
Ensembl chr 5:61,653,233...61,710,777 		JBrowse link
pharyngeal arch artery morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrf4 adhesion G protein-coupled receptor F4 acts_upstream_of_or_within ISO MGI:2182928 (PMID:28806758) RGD PMID:28806758 NCBI chr 9:18,272,050...18,303,219
Ensembl chr 9:18,272,050...18,303,217 		JBrowse link
G Adgrf5 adhesion G protein-coupled receptor F5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1925499 (PMID:28806758)		 Ensembl
RGD		 PMID:28806758 GO_REF:0000107 NCBI chr 9:17,517,596...17,624,107
Ensembl chr 9:17,520,009...17,623,968 		JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in IEA
ISO		 GO_REF:0000107
(MGI:3039210|PMID:15070745)		 Ensembl
RGD		 PMID:15070745 GO_REF:0000107 MGI:3039210 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A involved_in ISO (MGI:3040576|PMID:15073157) RGD PMID:15073157 MGI:3040576 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 involved_in
NOT|involved_in		 ISO (MGI:2429424|PMID:12441304)
(MGI:3851675|PMID:19409885)		 RGD PMID:12441304 PMID:19409885 MGI:2429424 MGI:3851675 NCBI chr 9:61,192,718...61,307,280
Ensembl chr 9:61,190,566...61,301,809 		JBrowse link
G Edn1 endothelin 1 involved_in ISO MGI:1857637|MGI:3773698|MGI:4867385 (PMID:23933587) RGD PMID:23933587 NCBI chr17:22,454,924...22,460,812
Ensembl chr17:22,454,420...22,460,885 		JBrowse link
G Ednra endothelin receptor type A involved_in IEA
ISO		 GO_REF:0000107
MGI:1857473|MGI:1857637|MGI:2687362|MGI:3773698|MGI:4867385 (PMID:23933587), (PMID:31219639)		 Ensembl
RGD		 PMID:23933587 PMID:31219639 GO_REF:0000107 NCBI chr19:30,233,540...30,303,727
Ensembl chr19:30,233,571...30,297,049 		JBrowse link
G Folr1 folate receptor alpha involved_in ISO (MGI:3721767|PMID:17286298) RGD PMID:17286298 MGI:3721767 NCBI chr 1:156,219,460...156,238,436
Ensembl chr 1:156,219,460...156,230,667 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in IEA
ISO		 GO_REF:0000107
(MGI:4453944|PMID:20122914)		 Ensembl
RGD		 PMID:20122914 GO_REF:0000107 MGI:4453944 NCBI chr11:70,705,763...70,708,176
Ensembl chr11:70,705,764...70,708,192 		JBrowse link
G Megf8 multiple EGF-like-domains 8 acts_upstream_of_or_within ISO (PMID:32203821) RGD PMID:32203821 NCBI chr 1:80,902,236...80,951,614
Ensembl chr 1:80,902,574...80,951,613 		JBrowse link
G Nog noggin involved_in ISO
IEA		 (MGI:3783944|PMID:17218603)
GO_REF:0000107		 RGD
Ensembl		 PMID:17218603 GO_REF:0000107 MGI:3783944 NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339 		JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO MGI:3605892 (PMID:23319608) RGD PMID:23319608 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in ISO (MGI:3609313|PMID:11390347) RGD PMID:11390347 MGI:3609313 NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19870
    multicellular organismal process 8843
      multicellular organism development 5259
        system development 4544
          pharyngeal system development 34
            pharyngeal arch artery morphogenesis 13
Path 2
Term Annotations click to browse term
  biological_process 19870
    developmental process 6996
      anatomical structure development 6517
        multicellular organism development 5259
          embryo development 1362
            embryo development ending in birth or egg hatching 888
              chordate embryonic development 871
                pharyngeal system development 34
                  pharyngeal arch artery morphogenesis 13
paths to the root