Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:pharyngeal system development
go back to main search page
Accession:GO:0060037 term browser browse the term
Definition:The process whose specific outcome is the progression of the pharyngeal system over time, from its formation to the mature structure. The pharyngeal system is a transient embryonic complex that is specific to vertebrates. It comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the stucture it contributes to are forming: the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear.



show annotations for term's descendants           Sort by:
 
pharyngeal system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2386570|MGI:2651395 (MGI:3703113|PMID:17078885)
Ensembl
RGD
PMID:17078885 GO_REF:0000107 MGI:3703113 NCBI chr 3:42,978,558...43,097,892
Ensembl chr 3:42,978,561...43,098,241
JBrowse link
G Bmp5 bone morphogenetic protein 5 involved_in ISO UniProtKB:P23359 (MGI:1332253|PMID:10079236) RGD PMID:10079236 MGI:1332253 NCBI chr 8:76,517,164...76,639,925
Ensembl chr 8:76,517,164...76,639,925
JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in ISO UniProtKB:P49003 (MGI:1332253|PMID:10079236) RGD PMID:10079236 MGI:1332253 NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788
JBrowse link
G Ece1 endothelin converting enzyme 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2158947 (MGI:2675516|PMID:12950083)
Ensembl
RGD
PMID:12950083 GO_REF:0000107 MGI:2675516 NCBI chr 5:150,077,679...150,179,375
Ensembl chr 5:150,077,644...150,179,371
JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:102780|MGI:98493|MGI:99604 (MGI:5002778|PMID:21364285) RGD PMID:21364285 MGI:5002778 NCBI chr 5:4,863,501...5,101,483
Ensembl chr 5:4,955,543...5,101,483
JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO MGI:102780|MGI:109344|MGI:98493 (MGI:5002778|PMID:21364285) RGD PMID:21364285 MGI:5002778 NCBI chr 1:244,584,477...244,590,359
Ensembl chr 1:244,584,652...244,590,359
JBrowse link
G Gata3 GATA binding protein 3 involved_in ISS
ISO
GO_REF:0000024
(MGI:3832106|PMID:18955134)
UniProt
RGD
PMID:18955134 GO_REF:0000024 MGI:3832106 NCBI chr17:68,643,760...68,666,000
Ensembl chr17:68,643,873...68,665,391
JBrowse link
G Hoxa2 homeobox A2 involved_in ISO
IEA
(MGI:5644573|PMID:25889273)
GO_REF:0000107
RGD
Ensembl
PMID:25889273 GO_REF:0000107 MGI:5644573
G Isl1 ISL LIM homeobox 1 involved_in ISO UniProtKB:Q02248 (MGI:3829137|PMID:17519333) RGD PMID:17519333 MGI:3829137 NCBI chr 2:48,079,412...48,090,704
Ensembl chr 2:48,080,522...48,095,584
JBrowse link
G Nkx2-5 NK2 homeobox 5 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:97351 (MGI:2135851|PMID:11390666)
Ensembl
RGD
PMID:11390666 GO_REF:0000107 MGI:2135851 NCBI chr10:16,340,428...16,347,004
Ensembl chr10:16,344,159...16,346,934
JBrowse link
G Nkx2-6 NK2 homeobox 6 acts_upstream_of_or_within ISO MGI:97350 (MGI:2135851|PMID:11390666), (PMID:9486544), (PMID:9545560), (PMID:9621431) RGD PMID:9486544 PMID:9545560 PMID:9621431 PMID:11390666 MGI:2135851 NCBI chr15:44,443,151...44,447,248
Ensembl chr15:44,443,101...44,447,247
JBrowse link
G Nkx3-1 NK3 homeobox 1 acts_upstream_of_or_within ISO (PMID:9621431) RGD PMID:9621431 NCBI chr15:44,473,851...44,476,443
Ensembl chr15:44,473,851...44,476,441
JBrowse link
G Plxna2 plexin A2 acts_upstream_of_or_within ISO (PMID:19666519) RGD PMID:19666519 NCBI chr13:106,163,103...106,358,979
Ensembl chr13:106,163,103...106,358,979
JBrowse link
G Ptch1 patched 1 involved_in ISO (PMID:8681379), (PMID:8981943) RGD PMID:8681379 PMID:8981943 NCBI chr17:1,542,705...1,607,730
Ensembl chr17:1,542,877...1,607,333
JBrowse link
G Ripply3 ripply transcriptional repressor 3 involved_in ISO (MGI:4879036|PMID:21177346) RGD PMID:21177346 MGI:4879036 NCBI chr11:33,648,471...33,656,587
Ensembl chr11:33,648,486...33,656,584
JBrowse link
G Six1 SIX homeobox 1 involved_in
acts_upstream_of_or_within
ISO (MGI:3624596|PMID:16530750)
MGI:109344|MGI:98493|MGI:99604 (MGI:5002778|PMID:21364285)
RGD PMID:16530750 PMID:21364285 MGI:3624596 MGI:5002778 NCBI chr 6:91,746,739...91,751,975
Ensembl chr 6:91,746,739...91,751,975
JBrowse link
G Six4 SIX homeobox 4 involved_in ISO (MGI:3624596|PMID:16530750) RGD PMID:16530750 MGI:3624596 NCBI chr 6:91,802,328...91,816,062
Ensembl chr 6:91,802,329...91,815,992
JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(MGI:4879036|PMID:21177346)
MGI:102780|MGI:109344|MGI:3046793|MGI:99604 (MGI:3763333|PMID:16141220), (MGI:5002778|PMID:21364285)
(PMID:14585638)
UniProt
RGD
PMID:14585638 PMID:16141220 PMID:21177346 PMID:21364285 GO_REF:0000024 MGI:3763333 MGI:4879036 MGI:5002778 NCBI chr11:82,409,275...82,419,058
Ensembl chr11:82,409,275...82,418,380
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:2386570|MGI:2388050 (MGI:3703113|PMID:17078885)
GO_REF:0000107
RGD
Ensembl
PMID:17078885 GO_REF:0000107 MGI:3703113 NCBI chr 5:61,653,773...61,710,777
Ensembl chr 5:61,653,233...61,710,777
JBrowse link
pharyngeal arch artery morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrf4 adhesion G protein-coupled receptor F4 acts_upstream_of_or_within ISO MGI:2182928 (MGI:5919853|PMID:28806758) RGD PMID:28806758 MGI:5919853 NCBI chr 9:18,272,050...18,303,219
Ensembl chr 9:18,272,050...18,303,217
JBrowse link
G Adgrf5 adhesion G protein-coupled receptor F5 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1925499 (MGI:5919853|PMID:28806758)
Ensembl
RGD
PMID:28806758 GO_REF:0000107 MGI:5919853 NCBI chr 9:17,517,596...17,624,107
Ensembl chr 9:17,520,009...17,623,968
JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in IEA
ISO
GO_REF:0000107
(MGI:3039210|PMID:15070745)
Ensembl
RGD
PMID:15070745 GO_REF:0000107 MGI:3039210 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A involved_in ISO (MGI:3040576|PMID:15073157) RGD PMID:15073157 MGI:3040576 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616
JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 involved_in
NOT|involved_in
ISO (MGI:2429424|PMID:12441304)
(MGI:3851675|PMID:19409885)
RGD PMID:12441304 PMID:19409885 MGI:2429424 MGI:3851675 NCBI chr 9:61,192,718...61,307,280
Ensembl chr 9:61,190,566...61,301,809
JBrowse link
G Edn1 endothelin 1 involved_in ISO MGI:1857637|MGI:3773698|MGI:4867385 (MGI:5532613|PMID:23933587) RGD PMID:23933587 MGI:5532613 NCBI chr17:22,454,924...22,460,812
Ensembl chr17:22,454,420...22,460,885
JBrowse link
G Ednra endothelin receptor type A involved_in ISO
IEA
MGI:1857473|MGI:1857637|MGI:2687362|MGI:3773698|MGI:4867385 (MGI:5532613|PMID:23933587), (MGI:6362316|PMID:31219639)
GO_REF:0000107
RGD
Ensembl
PMID:23933587 PMID:31219639 GO_REF:0000107 MGI:5532613 MGI:6362316 NCBI chr19:30,233,540...30,303,727
Ensembl chr19:30,233,571...30,297,049
JBrowse link
G Folr1 folate receptor alpha involved_in ISO (MGI:3721767|PMID:17286298) RGD PMID:17286298 MGI:3721767 NCBI chr 1:156,219,460...156,238,436
Ensembl chr 1:156,219,460...156,230,667
JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in IEA
ISO
GO_REF:0000107
(MGI:4453944|PMID:20122914)
Ensembl
RGD
PMID:20122914 GO_REF:0000107 MGI:4453944 NCBI chr11:70,705,763...70,708,176
Ensembl chr11:70,705,764...70,708,192
JBrowse link
G Nog noggin involved_in IEA
ISO
GO_REF:0000107
(MGI:3783944|PMID:17218603)
Ensembl
RGD
PMID:17218603 GO_REF:0000107 MGI:3783944 NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO MGI:3605892 (MGI:5469230|PMID:23319608) RGD PMID:23319608 MGI:5469230 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975
JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in ISO (MGI:3609313|PMID:11390347) RGD PMID:11390347 MGI:3609313 NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19497
    multicellular organismal process 8976
      multicellular organism development 5727
        system development 5373
          pharyngeal system development 31
            pharyngeal arch artery morphogenesis 12
Path 2
Term Annotations click to browse term
  biological_process 19497
    developmental process 6889
      anatomical structure development 6306
        multicellular organism development 5727
          embryo development 1347
            embryo development ending in birth or egg hatching 867
              chordate embryonic development 851
                pharyngeal system development 31
                  pharyngeal arch artery morphogenesis 12
paths to the root