ONTOLOGY REPORT - ANNOTATIONS
Term: T-helper 17 cell differentiation
Accession: GO:0072539
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Definition: The process in which a relatively unspecialized T cell acquires the specialized features of a T-helper 17 (Th17) cell. A Th17 cell is a CD4-positive, alpha-beta T cell with the phenotype RORgamma-t-positive that produces IL-17.
Comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'.
Synonyms: related_synonym: T-helper 17 cell development
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BATF
basic leucine zipper ATF-like transcription factor
involved_in
ISS IEA
UniProt Ensembl
GO_REF:0000024 GO_REF:0000107
NCBI chr14:75,522,469...75,546,992
Ensembl chr14:75,522,455...75,546,993
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ENTPD7
ectonucleoside triphosphate diphosphohydrolase 7
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr10:99,659,509...99,711,241
Ensembl chr10:99,659,509...99,711,241
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NFKBIZ
NFKB inhibitor zeta
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:101,827,990...101,861,022
Ensembl chr 3:101,827,991...101,861,022
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RORA
RAR related orphan receptor A
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr15:60,488,284...61,229,302
Ensembl chr15:60,488,284...61,229,302
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RORC
RAR related orphan receptor C
involved_in acts_upstream_of_or_within
ISS ISO
(PMID:18792410)
UniProt MGI
PMID:18792410
GO_REF:0000024
NCBI chr 1:151,806,071...151,831,802
Ensembl chr 1:151,806,071...151,831,845
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ASCL2
achaete-scute family bHLH transcription factor 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr11:2,268,498...2,270,588
Ensembl chr11:2,268,498...2,270,588
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FOXP3
forkhead box P3
involved_in
IMP
(PMID:23169781)
UniProt
PMID:23169781
NCBI chr X:49,250,438...49,264,710
Ensembl chr X:49,250,438...49,264,800
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IL2
interleukin 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 4:122,451,470...122,456,725
Ensembl chr 4:122,451,470...122,456,725
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IL4
interleukin 4
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:18792410)
TreeGrafter MGI
PMID:18792410
GO_REF:0000118
NCBI chr 5:132,673,989...132,682,678
Ensembl chr 5:132,673,986...132,682,678
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PF4
platelet factor 4
ISO
RGD
PMID:24986443
RGD:329901907
NCBI chr 4:73,980,811...73,982,124
Ensembl chr 4:73,980,811...73,982,027
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RC3H1
ring finger and CCCH-type domains 1
involved_in
IEA ISS
Ensembl UniProt
GO_REF:0000024 GO_REF:0000107
NCBI chr 1:173,931,084...174,022,357
Ensembl chr 1:173,931,084...174,022,357
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RC3H2
ring finger and CCCH-type domains 2
involved_in
IEA ISS
Ensembl UniProt
GO_REF:0000024 GO_REF:0000107
NCBI chr 9:122,844,556...122,905,359
Ensembl chr 9:122,844,556...122,905,359
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SMAD7
SMAD family member 7
involved_in
IEA ISS
Ensembl BHF-UCL
GO_REF:0000024 GO_REF:0000107
NCBI chr18:48,919,853...48,950,965
Ensembl chr18:48,919,853...48,950,965
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TBX21
T-box transcription factor 21
involved_in
ISS IEA
UniProt Ensembl
GO_REF:0000024 GO_REF:0000107
NCBI chr17:47,733,236...47,746,122
Ensembl chr17:47,733,236...47,746,122
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ZBTB7B
zinc finger and BTB domain containing 7B
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:23034280)
Ensembl MGI
PMID:23034280
GO_REF:0000107
NCBI chr 1:155,001,750...155,018,523
Ensembl chr 1:155,002,630...155,018,523
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ZC3H12A
zinc finger CCCH-type containing 12A
involved_in
IEA ISS
Ensembl UniProt
GO_REF:0000024 GO_REF:0000107
NCBI chr 1:37,474,580...37,484,377
Ensembl chr 1:37,474,580...37,484,377
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LOXL3
lysyl oxidase like 3
involved_in
IEA IDA ISS
(PMID:28065600)
Ensembl UniProt
PMID:28065600
GO_REF:0000024 GO_REF:0000107
NCBI chr 2:74,532,258...74,555,702
Ensembl chr 2:74,532,258...74,555,690
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TBX21
T-box transcription factor 21
involved_in
IEA ISS
Ensembl UniProt
GO_REF:0000024 GO_REF:0000107
NCBI chr17:47,733,236...47,746,122
Ensembl chr17:47,733,236...47,746,122
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TNFSF18
TNF superfamily member 18
involved_in
ISO
(MGI:5551556|PMID:24107315)
UniProt
PMID:24107315
MGI:5551556
NCBI chr 1:173,039,202...173,050,941
Ensembl chr 1:173,039,202...173,050,941
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MALT1
MALT1 paracaspase
involved_in
ISS IEA
UniProt Ensembl
GO_REF:0000024 GO_REF:0000107
NCBI chr18:58,671,465...58,754,477
Ensembl chr18:58,671,465...58,754,477
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MIR21
microRNA 21
involved_in
ISS
BHF-UCL
GO_REF:0000024
NCBI chr17:59,841,266...59,841,337
Ensembl chr17:59,841,266...59,841,337
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MIR326
microRNA 326
acts_upstream_of_or_within
ISO
(PMID:19838199)
MGI
PMID:19838199
NCBI chr11:75,335,092...75,335,186
Ensembl chr11:75,335,092...75,335,186
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NFKBID
NFKB inhibitor delta
involved_in
ISS
UniProt
GO_REF:0000024
NCBI chr19:35,887,952...35,902,303
Ensembl chr19:35,887,630...35,902,303
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NFKBIZ
NFKB inhibitor zeta
involved_in
IEA ISS
Ensembl UniProt
GO_REF:0000024 GO_REF:0000107
NCBI chr 3:101,827,990...101,861,022
Ensembl chr 3:101,827,991...101,861,022
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NLRP3
NLR family pyrin domain containing 3
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:247,416,077...247,448,817
Ensembl chr 1:247,332,331...247,449,108
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BRD2
bromodomain containing 2
involved_in
IEA IDA
(PMID:28262505)
Ensembl UniProt
PMID:28262505
GO_REF:0000107
NCBI chr 6:32,968,594...32,981,505
Ensembl chr 6:32,968,594...32,981,505
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BRD4
bromodomain containing 4
involved_in
ISS
UniProt
GO_REF:0000024
NCBI chr19:15,235,519...15,332,539
Ensembl chr19:15,235,519...15,332,545
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EP300
E1A binding protein p300
involved_in
IDA
(PMID:28262505)
UniProt
PMID:28262505
NCBI chr22:41,092,592...41,180,077
Ensembl chr22:41,092,510...41,180,077
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IL12B
interleukin 12B
involved_in
ISS
BHF-UCL
GO_REF:0000024
NCBI chr 5:159,314,780...159,330,487
Ensembl chr 5:159,314,780...159,330,863
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IL12RB1
interleukin 12 receptor subunit beta 1
involved_in
ISS
BHF-UCL
GO_REF:0000024
NCBI chr19:18,058,995...18,098,816
Ensembl chr19:18,058,995...18,098,944
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IL23A
interleukin 23 subunit alpha
involved_in
IEA IBA ISS
Ensembl GO_Central BHF-UCL
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107
NCBI chr12:56,338,884...56,340,410
Ensembl chr12:56,334,174...56,340,410
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IL23R
interleukin 23 receptor
involved_in
ISS
BHF-UCL
GO_REF:0000024
NCBI chr 1:67,138,637...67,265,903
Ensembl chr 1:67,138,907...67,259,979
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OPA1
OPA1 mitochondrial dynamin like GTPase
involved_in
ISS
UniProt
GO_REF:0000024
NCBI chr 3:193,593,208...193,697,811
Ensembl chr 3:193,593,144...193,697,811
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BATF
basic leucine zipper ATF-like transcription factor
involved_in
NAS
(PMID:29234109)
ComplexPortal
PMID:29234109
NCBI chr14:75,522,469...75,546,992
Ensembl chr14:75,522,455...75,546,993
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CCL20
C-C motif chemokine ligand 20
NOT|involved_in
ISO
(MGI:3820359|PMID:19050256)
UniProt
PMID:19050256
MGI:3820359
NCBI chr 2:227,813,842...227,817,556
Ensembl chr 2:227,805,739...227,817,564
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CCR6
C-C motif chemokine receptor 6
NOT|involved_in
ISO
(MGI:3820359|PMID:19050256)
UniProt
PMID:19050256
MGI:3820359
NCBI chr 6:167,111,795...167,139,141
Ensembl chr 6:167,111,807...167,139,141
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JUNB
JunB proto-oncogene, AP-1 transcription factor subunit
involved_in
NAS
(PMID:29234109)
ComplexPortal
PMID:29234109
NCBI chr19:12,791,486...12,793,315
Ensembl chr19:12,791,486...12,793,315
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MIR301A
microRNA 301a
acts_upstream_of_or_within
ISO
(PMID:22517757)
MGI
PMID:22517757
NCBI chr17:59,151,136...59,151,221
Ensembl chr17:59,151,136...59,151,221
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BATF
basic leucine zipper ATF-like transcription factor
involved_in
ISS IEA
UniProt Ensembl
GO_REF:0000024 GO_REF:0000107
NCBI chr14:75,522,469...75,546,992
Ensembl chr14:75,522,455...75,546,993
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IL6
interleukin 6
involved_in
ISS
(PMID:27893700)
UniProt
PMID:27893700
GO_REF:0000024
NCBI chr 7:22,727,200...22,731,998
Ensembl chr 7:22,725,884...22,732,002
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IL6R
interleukin 6 receptor
involved_in
IEA ISS
(PMID:27893700)
Ensembl UniProt
PMID:27893700
GO_REF:0000107
NCBI chr 1:154,405,343...154,469,450
Ensembl chr 1:154,405,193...154,469,450
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IL6ST
interleukin 6 cytokine family signal transducer
involved_in
ISS
(PMID:27893700)
UniProt
PMID:27893700
NCBI chr 5:55,935,095...55,994,963
Ensembl chr 5:55,935,095...55,995,022
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IRF4
interferon regulatory factor 4
involved_in
IEA ISS
Ensembl UniProt
GO_REF:0000024 GO_REF:0000107
NCBI chr 6:391,752...411,443
Ensembl chr 6:391,739...411,443
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JAK1
Janus kinase 1
involved_in
TAS
(PMID:27893700)
UniProt
PMID:27893700
NCBI chr 1:64,833,229...65,067,746
Ensembl chr 1:64,833,223...65,067,754
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LY9
lymphocyte antigen 9
involved_in
IDA
(PMID:22184727)
UniProt
PMID:22184727
NCBI chr 1:160,796,174...160,828,255
Ensembl chr 1:160,796,074...160,828,261
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OTUD5
OTU deubiquitinase 5
acts_upstream_of_or_within
ISO
(PMID:25470037)
MGI
PMID:25470037
NCBI chr X:48,922,024...48,958,381
Ensembl chr X:48,922,024...48,958,386
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SLAMF6
SLAM family member 6
involved_in
IDA IBA IEA
(PMID:22184727)
UniProt GO_Central TreeGrafter
PMID:22184727
GO_REF:0000033 GO_REF:0000118
NCBI chr 1:160,485,036...160,523,255
Ensembl chr 1:160,485,030...160,523,262
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SOCS3
suppressor of cytokine signaling 3
involved_in
TAS
(PMID:27893700)
UniProt
PMID:27893700
NCBI chr17:78,356,778...78,360,925
Ensembl chr17:78,356,778...78,360,077
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STAT3
signal transducer and activator of transcription 3
involved_in
IEA ISS
Ensembl UniProt
GO_REF:0000024 GO_REF:0000107
NCBI chr17:42,313,324...42,388,442
Ensembl chr17:42,313,324...42,388,568
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