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ONTOLOGY REPORT - ANNOTATIONS

Term:pre-mRNA binding
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Accession:GO:0036002 term browser browse the term
Definition:Binding to a pre-messenger RNA (pre-mRNA), an intermediate molecule between DNA and protein that may contain introns and, at least in part, encodes one or more proteins. Introns are removed from pre-mRNA to form a mRNA molecule.
Synonyms:related_synonym: protein-coding primary transcript binding


show annotations for term's descendants           Sort by:
pre-mRNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf1 CUGBP, Elav-like family member 1 enables ISO (PMID:11158314) RGD PMID:11158314 NCBI chr 3:76,924,591...76,999,429
Ensembl chr 3:76,924,613...76,999,426 		JBrowse link
G Celf2 CUGBP, Elav-like family member 2 enables ISO (PMID:11158314) RGD PMID:11158314 NCBI chr17:70,904,462...71,729,072
Ensembl chr17:71,210,853...71,728,333 		JBrowse link
G Celf4 CUGBP, Elav-like family member 4 enables ISO (PMID:11158314) RGD PMID:11158314 NCBI chr18:16,786,578...17,065,045
Ensembl chr18:16,786,867...17,064,786 		JBrowse link
G Ddx5 DEAD-box helicase 5 enables ISO (PMID:21343338) RGD PMID:21343338 NCBI chr10:91,723,508...91,732,210
Ensembl chr10:91,723,508...91,732,283 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 enables ISO (PMID:25689357), (PMID:28985503) RGD PMID:25689357 PMID:28985503 NCBI chr 7:134,375,318...134,381,610
Ensembl chr 7:134,375,150...134,381,609 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U enables ISO
IEA		 (PMID:22325991)
GO_REF:0000107		 RGD
Ensembl		 PMID:22325991 GO_REF:0000107 NCBI chr13:90,069,058...90,086,905
Ensembl chr13:90,074,181...90,086,588 		JBrowse link
G Lsm1 LSM1 homolog, mRNA degradation associated IDA RGD PMID:19188494 RGD:9999194 NCBI chr16:66,277,345...66,288,852
Ensembl chr16:66,277,345...66,288,852 		JBrowse link
G Per2 period circadian regulator 2 enables ISO (MGI:5430667|PMID:22767893) RGD PMID:22767893 MGI:5430667 NCBI chr 9:92,007,289...92,049,551
Ensembl chr 9:92,007,296...92,049,459 		JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 enables ISO (PMID:16260624) RGD PMID:16260624 NCBI chr 7:9,842,574...9,852,332
Ensembl chr 7:9,842,574...9,852,397 		JBrowse link
G Rbm22 RNA binding motif protein 22 enables ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:22246180)		 UniProt
GO_Central
RGD		 PMID:22246180 GO_REF:0000024 GO_REF:0000033 NCBI chr18:54,013,374...54,024,182
Ensembl chr18:54,013,351...54,024,569 		JBrowse link
G Rbm4 RNA binding motif protein 4 enables ISO (MGI:5447617|PMID:16260624) RGD PMID:16260624 MGI:5447617 NCBI chr 1:202,078,442...202,087,506
Ensembl chr 1:202,085,279...202,105,380 		JBrowse link
G Rbpms RNA binding protein, mRNA processing factor enables IMP PMID:37548402 UniProt PMID:37548402 RGD:401901235 NCBI chr16:58,239,370...58,395,424
Ensembl chr16:58,239,474...58,395,426 		JBrowse link
G Srsf2 serine and arginine rich splicing factor 2 enables ISO (PMID:21470964) RGD PMID:21470964 NCBI chr10:102,052,158...102,055,365
Ensembl chr10:102,052,314...102,055,338 		JBrowse link
G Srsf3 serine and arginine rich splicing factor 3 NOT|enables ISO (PMID:32440474) RGD PMID:32440474 NCBI chr20:7,091,928...7,101,860
Ensembl chr20:7,091,910...7,101,078 		JBrowse link
G Srsf6 serine and arginine rich splicing factor 6 enables ISO
ISS		 (PMID:12549914)
GO_REF:0000024		 RGD
UniProt		 PMID:12549914 GO_REF:0000024 NCBI chr 3:151,589,546...151,594,869
Ensembl chr 3:151,589,535...151,594,860 		JBrowse link
G Tra2b transformer 2 beta enables ISO
IEA		 (PMID:25689357)
GO_REF:0000107		 RGD
Ensembl		 PMID:25689357 GO_REF:0000107 NCBI chr11:78,788,880...78,807,252
Ensembl chr11:78,788,884...78,807,249 		JBrowse link
histone pre-mRNA stem-loop binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eri1 exoribonuclease 1 enables ISS
ISO		 GO_REF:0000024
(MGI:4353869|PMID:19470752)		 UniProt
RGD		 PMID:19470752 GO_REF:0000024 MGI:4353869 NCBI chr16:56,724,101...56,744,228
Ensembl chr16:56,724,115...56,744,226 		JBrowse link
G Slbp stem-loop histone mRNA binding protein enables ISO
IBA		 (MGI:4353869|PMID:19470752)
GO_REF:0000033		 RGD
GO_Central		 PMID:19470752 GO_REF:0000033 MGI:4353869 NCBI chr14:77,071,441...77,081,911
Ensembl chr14:77,071,632...77,081,906 		JBrowse link
G Slbpl stem-loop binding protein like enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:26,356,478...26,363,577
Ensembl chr18:26,356,474...26,363,577 		JBrowse link
pre-mRNA 3'-splice site binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpk heterogeneous nuclear ribonucleoprotein K IDA RGD PMID:22684629 RGD:10002775 NCBI chr17:6,262,936...6,275,001
Ensembl chr17:6,262,998...6,274,997 		JBrowse link
G Slu7 SLU7 homolog, splicing factor enables ISO
ISS
IEA		 (PMID:15728250)
PMID:15181151
GO_REF:0000104		 RGD
UniProt		 PMID:15728250 PMID:15181151 GO_REF:0000104, RGD:1304333 NCBI chr10:27,908,325...27,923,784
Ensembl chr10:27,908,396...27,923,349 		JBrowse link
G U2af1 U2 small nuclear RNA auxiliary factor 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:9,742,904...9,753,840
Ensembl chr20:9,742,905...9,753,832 		JBrowse link
G U2af1l4 U2 small nuclear RNA auxiliary factor 1-like 4 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:85,816,268...85,818,462
Ensembl chr 1:85,815,101...85,818,462 		JBrowse link
G U2af2 U2 small nuclear RNA auxiliary factor 2 enables ISO
IBA		 (PMID:2531895)
GO_REF:0000033		 RGD
GO_Central		 PMID:2531895 GO_REF:0000033 NCBI chr 1:68,760,911...68,779,730
Ensembl chr 1:68,760,924...68,778,492 		JBrowse link
G Zrsr2 zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2 enables ISO
IBA		 (PMID:21041408)
GO_REF:0000033		 RGD
GO_Central		 PMID:21041408 GO_REF:0000033 NCBI chr  X:30,547,424...30,571,613
Ensembl chr  X:30,547,536...30,570,125 		JBrowse link
G Zrsr2-ps1 zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2, pseudogene 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:96,972,651...96,978,364
Ensembl chr14:96,972,580...96,978,891 		JBrowse link
pre-mRNA 5'-splice site binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prpf39 pre-mRNA processing factor 39 contributes_to IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:83,088,981...83,113,826
Ensembl chr 6:83,088,986...83,113,825 		JBrowse link
G Snrpc small nuclear ribonucleoprotein polypeptide C enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:5,888,453...5,906,638
Ensembl chr20:5,888,453...5,906,638 		JBrowse link
pre-mRNA branch point binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sf1 splicing factor 1 enables IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:203,670,016...203,683,432
Ensembl chr 1:203,670,018...203,684,330 		JBrowse link
pre-mRNA intronic binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ep300 E1A binding protein p300 enables ISO (PMID:23752591) RGD PMID:23752591 NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088 		JBrowse link
G Fblim1 filamin binding LIM protein 1 enables ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 5:153,883,945...153,915,524
Ensembl chr 5:153,883,960...153,913,757 		JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 enables IEA
ISO		 GO_REF:0000107
(PMID:18480465)		 Ensembl
RGD		 PMID:18480465 GO_REF:0000107 NCBI chr 4:80,534,659...80,545,297
Ensembl chr 4:80,534,651...80,545,249 		JBrowse link
G Hnrnpl heterogeneous nuclear ribonucleoprotein L enables ISS
ISO
IEA		 GO_REF:0000024
(PMID:25623890)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:25623890 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:84,098,558...84,111,568
Ensembl chr 1:84,100,879...84,111,553 		JBrowse link
G Prpf8 pre-mRNA processing factor 8 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:60,331,494...60,354,606
Ensembl chr10:60,331,494...60,354,606 		JBrowse link
G Rbm20 RNA binding motif protein 20 enables IDA
ISO		 PMID:24960161
(PMID:24960161), (PMID:34732726)
(MGI:6416009|PMID:32187365)		 RGD PMID:24960161 PMID:32187365 PMID:34732726 PMID:24960161 MGI:6416009, RGD:152025509 NCBI chr 1:252,683,760...252,907,465
Ensembl chr 1:252,683,771...252,886,060 		JBrowse link
G Rbm24 RNA binding motif protein 24 enables ISO (MGI:6148527|PMID:25313962) RGD PMID:25313962 MGI:6148527 NCBI chr17:18,275,681...18,288,231
Ensembl chr17:18,275,688...18,288,102 		JBrowse link
G Rbm4 RNA binding motif protein 4 enables ISO (PMID:16260624) RGD PMID:16260624 NCBI chr 1:202,078,442...202,087,506
Ensembl chr 1:202,085,279...202,105,380 		JBrowse link
G Rbm41 RNA binding motif protein 41 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:103,605,732...103,660,381
Ensembl chr  X:103,608,585...103,660,381 		JBrowse link
G Rbm7 RNA binding motif protein 7 enables ISO (PMID:25578728) RGD PMID:25578728 NCBI chr 8:48,831,894...48,838,399
Ensembl chr 8:48,831,894...48,838,411 		JBrowse link
G Rbpms RNA binding protein, mRNA processing factor enables ISO (PMID:24860013) RGD PMID:24860013 NCBI chr16:58,239,370...58,395,424
Ensembl chr16:58,239,474...58,395,426 		JBrowse link
G Rnpc3 RNA-binding region (RNP1, RRM) containing 3 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:201,432,769...201,457,015
Ensembl chr 2:201,432,684...201,456,747 		JBrowse link
G Sox9 SRY-box transcription factor 9 enables ISO (PMID:24191021) RGD PMID:24191021 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Tardbp TAR DNA binding protein enables ISO (PMID:27378374) RGD PMID:27378374 NCBI chr 5:159,050,518...159,062,218
Ensembl chr 5:159,051,799...159,062,055 		JBrowse link
pre-mRNA intronic pyrimidine-rich binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elavl4 ELAV like RNA binding protein 4 enables ISS
ISO		 GO_REF:0000024
(PMID:17035636)		 UniProt
RGD		 PMID:17035636 GO_REF:0000024 NCBI chr 5:125,056,848...125,200,543
Ensembl chr 5:125,056,848...125,200,446 		JBrowse link
G Rbm4 RNA binding motif protein 4 enables ISO (PMID:16260624), (PMID:16777844) RGD PMID:16260624 PMID:16777844 NCBI chr 1:202,078,442...202,087,506
Ensembl chr 1:202,085,279...202,105,380 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 20483
    binding 17534
      organic cyclic compound binding 6113
        nucleic acid binding 3845
          RNA binding 1555
            pre-mRNA binding 42
              histone pre-mRNA stem-loop binding 3
              pre-mRNA 3'-splice site binding 7
              pre-mRNA 5'-splice site binding 2
              pre-mRNA branch point binding 1
              pre-mRNA intronic binding + 15
paths to the root