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Gene: Lsm1 (LSM1 homolog, mRNA degradation associated) Rattus norvegicus
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Symbol: Lsm1
Name: LSM1 homolog, mRNA degradation associated
RGD ID: 1304967
Description: Exhibits mRNA binding activity and pre-mRNA binding activity. Predicted to be involved in negative regulation of neuron differentiation; nuclear-transcribed mRNA catabolic process; and stem cell population maintenance. Localizes to several cellular components, including dendrite; messenger ribonucleoprotein complex; and neuronal cell body. Orthologous to human LSM1 (LSM1 homolog, mRNA degradation associated); PARTICIPATES IN RNA degradation pathway; INTERACTS WITH 2,4-dinitrotoluene; bisphenol A; flutamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC364624; LSM1 homolog, U6 small nuclear RNA associated; LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae); LSM1 mRNA degradation associated; LSM1, U6 small nuclear RNA associated; U6 snRNA-associated Sm-like protein LSm1
Orthologs:
Homo sapiens (human) : LSM1 (LSM1 homolog, mRNA degradation associated)  HGNC  Alliance
Mus musculus (house mouse) : Lsm1 (LSM1 homolog, mRNA degradation associated)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Lsm1 (LSM1 homolog, mRNA degradation associated)
Pan paniscus (bonobo/pygmy chimpanzee) : LSM1 (LSM1 homolog, mRNA degradation associated)
Canis lupus familiaris (dog) : LSM1 (LSM1 homolog, mRNA degradation associated)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Lsm1 (LSM1 homolog, mRNA degradation associated)
Sus scrofa (pig) : LSM1 (LSM1 homolog, mRNA degradation associated)
Chlorocebus sabaeus (African green monkey) : LSM1 (LSM1 homolog, mRNA degradation associated)
Heterocephalus glaber (naked mole-rat) : Lsm1 (LSM1 homolog, mRNA degradation associated)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01671,046,475 - 71,057,883 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1671,046,475 - 71,057,883 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01670,711,151 - 70,722,559 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41670,652,831 - 70,663,995 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11670,653,556 - 70,663,907 (-)NCBI
Celera1664,187,220 - 64,198,747 (-)NCBICelera
Cytogenetic Map16q12.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Lsm1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1304967
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.