Gene: Lsm1 (LSM1 homolog, mRNA degradation associated) Rattus norvegicus
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Symbol: Lsm1
Name: LSM1 homolog, mRNA degradation associated
Description: ENCODES a protein that exhibits mRNA binding; pre-mRNA binding; INVOLVED IN histone mRNA catabolic process (ortholog); negative regulation of neuron differentiation (ortholog); stem cell population maintenance (ortholog); PARTICIPATES IN RNA degradation pathway; FOUND IN axon; dendrite; messenger ribonucleoprotein complex; INTERACTS WITH 2,4-dinitrotoluene; bisphenol A; flutamide
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC364624; LSM1 homolog, U6 small nuclear RNA associated; LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae); LSM1 mRNA degradation associated; LSM1, U6 small nuclear RNA associated; U6 snRNA-associated Sm-like protein LSm1
Orthologs:
Homo sapiens (human) : LSM1 (LSM1 homolog, mRNA degradation associated)  HGNC  Alliance
Mus musculus (house mouse) : Lsm1 (LSM1 homolog, mRNA degradation associated)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Lsm1 (LSM1 homolog, mRNA degradation associated)
Pan paniscus (bonobo/pygmy chimpanzee) : LSM1 (LSM1 homolog, mRNA degradation associated)
Canis lupus familiaris (dog) : LSM1 (LSM1 homolog, mRNA degradation associated)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Lsm1 (LSM1 homolog, mRNA degradation associated)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01671,046,475 - 71,057,883 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01670,711,151 - 70,722,559 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41670,652,831 - 70,663,995 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11670,653,556 - 70,663,907 (-)NCBI
Celera1664,187,220 - 64,198,747 (-)NCBICelera
Cytogenetic Map16q12.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Lsm1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1304967
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2018-11-20
Status: ACTIVE