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Gene: Rbpms (RNA binding protein, mRNA processing factor) Rattus norvegicus

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Symbol:

Rbpms

Name:

RNA binding protein, mRNA processing factor

RGD ID:

1561067

Description:

Enables identical protein binding activity; molecular adaptor activity; and pre-mRNA binding activity. Involved in protein-containing complex assembly and regulation of alternative mRNA splicing, via spliceosome. Predicted to be located in cytoplasmic stress granule; cytosol; and nucleoplasm. Orthologous to human RBPMS (RNA binding protein, mRNA processing factor); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; aconitine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC498642; RBP-MS; RGD1561067; RNA binding protein gene with multiple splicing; RNA binding protein with multiple splicing; RNA-binding protein with multiple splicing; similar to RNA binding protein gene with multiple splicing

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RBPMS (RNA binding protein, mRNA processing factor)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Treefam
Mus musculus (house mouse):	Rbpms (RNA binding protein gene with multiple splicing)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rbpms (RNA binding protein, mRNA processing factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RBPMS (RNA binding protein, mRNA processing factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RBPMS (RNA binding protein, mRNA processing factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rbpms (RNA binding protein, mRNA processing factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RBPMS (RNA binding protein, mRNA processing factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RBPMS (RNA binding protein, mRNA processing factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rbpms (RNA binding protein, mRNA processing factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	HFM1 (helicase for meiosis 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	RBPMS (RNA binding protein, mRNA processing factor)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rbpms (RNA binding protein gene with multiple splicing)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	mec-8	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	cpo	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rbpms	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	WHI3	Alliance	DIOPT (OrthoFinder\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	WHI4	Alliance	DIOPT (OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	rbpms	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	64,942,159 - 65,098,504 (+)	NCBI		GRCr8
mRatBN7.2	16	58,239,370 - 58,395,424 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	58,239,474 - 58,395,426 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	63,579,457 - 63,713,962 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	66,993,105 - 67,127,638 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	62,213,707 - 62,348,200 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	61,954,569 - 62,109,998 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	61,954,590 - 62,096,497 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	61,618,879 - 61,774,268 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	62,009,626 - 62,163,466 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	16	56,277,529 - 56,412,446 (+)	NCBI		Celera
Cytogenetic Map	16	q12.2-q12.3	NCBI

JBrowse:

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Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rbpms	Rat	(1->4)-beta-D-glucan	multiple interactions	ISO	RGD:1623288	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of RBPMS mRNA	CTD	PMID:36331819
Rbpms	Rat	1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane	decreases expression	ISO	RGD:1342648	6480464	o,p'-DDT results in decreased expression of RBPMS mRNA	CTD	PMID:18204070
Rbpms	Rat	1,2-dichloroethane	increases expression	ISO	RGD:1623288	6480464	ethylene dichloride results in increased expression of RBPMS mRNA	CTD	PMID:28960355
Rbpms	Rat	1,2-dimethylhydrazine	increases expression	ISO	RGD:1623288	6480464	1,2-Dimethylhydrazine results in increased expression of RBPMS mRNA	CTD	PMID:22206623
Rbpms	Rat	17alpha-ethynylestradiol	increases expression	EXP		6480464	Ethinyl Estradiol results in increased expression of RBPMS mRNA	CTD	PMID:15576828
Rbpms	Rat	17alpha-ethynylestradiol	multiple interactions	ISO	RGD:1623288	6480464	[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of RBPMS mRNA	CTD	PMID:17942748
Rbpms	Rat	17alpha-ethynylestradiol	increases expression	ISO	RGD:1623288	6480464	Ethinyl Estradiol results in increased expression of RBPMS mRNA	CTD	PMID:17942748
Rbpms	Rat	17alpha-ethynylestradiol	affects expression	ISO	RGD:1623288	6480464	Ethinyl Estradiol affects the expression of RBPMS mRNA	CTD	PMID:17555576
Rbpms	Rat	17beta-estradiol	multiple interactions	ISO	RGD:1342648	6480464	[Estradiol co-treated with TGFB1 protein] results in increased expression of RBPMS mRNA	CTD	PMID:30165855
Rbpms	Rat	17beta-estradiol	increases expression	ISO	RGD:1623288	6480464	Estradiol results in increased expression of RBPMS mRNA	CTD	PMID:39298647
Rbpms	Rat	2,3',4,4',5-Pentachlorobiphenyl	increases expression	ISO	RGD:1623288	6480464	2,3',4,4',5-pentachlorobiphenyl results in increased expression of RBPMS mRNA	CTD	PMID:31388691
Rbpms	Rat	2,3,7,8-tetrachlorodibenzodioxine	multiple interactions	ISO	RGD:1623288	6480464	[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of RBPMS mRNA	CTD	PMID:17942748
Rbpms	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of RBPMS mRNA	CTD	PMID:34747641
Rbpms	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of RBPMS mRNA	CTD	PMID:32109520
Rbpms	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	ISO	RGD:1623288	6480464	Tetrachlorodibenzodioxin results in decreased expression of RBPMS mRNA	CTD	PMID:28922406
Rbpms	Rat	2,3-dimethoxynaphthalene-1,4-dione	increases expression	ISO	RGD:1342648	6480464	2,3-dimethoxy-1,4-naphthoquinone results in increased expression of RBPMS mRNA	CTD	PMID:17547211
Rbpms	Rat	3-isobutyl-1-methyl-7H-xanthine	multiple interactions	ISO	RGD:1623288	6480464	[1-Methyl-3-isobutylxanthine co-treated with Dexamethasone co-treated with INS protein] results in increased expression of RBPMS mRNA	CTD	PMID:24848799
Rbpms	Rat	3-isobutyl-1-methyl-7H-xanthine	multiple interactions	ISO	RGD:1342648	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] more ...	CTD	PMID:28628672
Rbpms	Rat	4,4'-diaminodiphenylmethane	decreases expression	ISO	RGD:1623288	6480464	4,4'-diaminodiphenylmethane results in decreased expression of RBPMS mRNA	CTD	PMID:18648102
Rbpms	Rat	4,4'-sulfonyldiphenol	multiple interactions	ISO	RGD:1342648	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] more ...	CTD	PMID:28628672
Rbpms	Rat	4,4'-sulfonyldiphenol	increases expression	ISO	RGD:1623288	6480464	bisphenol S results in increased expression of RBPMS mRNA	CTD	PMID:30951980\|PMID:39298647
Rbpms	Rat	4-hydroxyphenyl retinamide	increases expression	ISO	RGD:1623288	6480464	Fenretinide results in increased expression of RBPMS mRNA	CTD	PMID:28973697
Rbpms	Rat	aconitine	increases expression	EXP		6480464	Aconitine results in increased expression of RBPMS protein	CTD	PMID:33236894
Rbpms	Rat	aflatoxin B1	decreases methylation	ISO	RGD:1342648	6480464	Aflatoxin B1 results in decreased methylation of RBPMS gene	CTD	PMID:27153756
Rbpms	Rat	all-trans-retinoic acid	decreases expression	ISO	RGD:1342648	6480464	Tretinoin results in decreased expression of RBPMS mRNA	CTD	PMID:21934132
Rbpms	Rat	all-trans-retinoic acid	multiple interactions	ISO	RGD:1623288	6480464	[bisphenol F co-treated with Tretinoin] results in decreased expression of RBPMS mRNA	CTD	PMID:30951980
Rbpms	Rat	all-trans-retinoic acid	increases expression	ISO	RGD:1342648	6480464	Tretinoin results in increased expression of RBPMS mRNA	CTD	PMID:23724009
Rbpms	Rat	all-trans-retinoic acid	increases expression	EXP		6480464	Tretinoin results in increased expression of RBPMS mRNA	CTD	PMID:20488242
Rbpms	Rat	alpha-Zearalanol	multiple interactions	EXP		6480464	[Zeranol co-treated with perfluorooctanoic acid] results in increased expression of RBPMS mRNA	CTD	PMID:35163327
Rbpms	Rat	amiodarone	increases expression	ISO	RGD:1342648	6480464	Amiodarone results in increased expression of RBPMS mRNA	CTD	PMID:19774075
Rbpms	Rat	antimony(0)	increases expression	ISO	RGD:1342648	6480464	Antimony results in increased expression of RBPMS mRNA	CTD	PMID:17547211
Rbpms	Rat	arsane	affects methylation	ISO	RGD:1342648	6480464	Arsenic affects the methylation of RBPMS gene	CTD	PMID:25304211
Rbpms	Rat	arsane	multiple interactions	ISO	RGD:1342648	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ...	CTD	PMID:39836092
Rbpms	Rat	arsenic atom	affects methylation	ISO	RGD:1342648	6480464	Arsenic affects the methylation of RBPMS gene	CTD	PMID:25304211
Rbpms	Rat	arsenic atom	multiple interactions	ISO	RGD:1342648	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ...	CTD	PMID:39836092
Rbpms	Rat	arsenite(3-)	increases methylation	ISO	RGD:1342648	6480464	arsenite results in increased methylation of RBPMS promoter	CTD	PMID:23974009
Rbpms	Rat	arsenite(3-)	increases expression	ISO	RGD:1623288	6480464	arsenite results in increased expression of RBPMS protein	CTD	PMID:37955338
Rbpms	Rat	arsenous acid	increases expression	ISO	RGD:1342648	6480464	Arsenic Trioxide results in increased expression of RBPMS mRNA	CTD	PMID:20458559
Rbpms	Rat	azoxystrobin	multiple interactions	EXP		6480464	[azoxystrobin co-treated with 2-chloro-N-(4-chlorobiphenyl-2-yl)nicotinamide co-treated with Chlorpyrifos co-treated with Glyphosate co-treated with imidacloprid co-treated with more ...	CTD	PMID:33854195
Rbpms	Rat	Benoxacor	decreases expression	ISO	RGD:1623288	6480464	benoxacor results in decreased expression of RBPMS mRNA	CTD	PMID:34850242
Rbpms	Rat	benzo[a]pyrene	decreases expression	EXP		6480464	Benzo(a)pyrene results in decreased expression of RBPMS mRNA	CTD	PMID:21839799
Rbpms	Rat	benzo[a]pyrene	decreases methylation	ISO	RGD:1342648	6480464	Benzo(a)pyrene results in decreased methylation of RBPMS promoter	CTD	PMID:27901495
Rbpms	Rat	benzo[a]pyrene	decreases expression	ISO	RGD:1623288	6480464	Benzo(a)pyrene results in decreased expression of RBPMS mRNA	CTD	PMID:19770486\|PMID:21715664
Rbpms	Rat	benzo[a]pyrene	increases expression	ISO	RGD:1623288	6480464	Benzo(a)pyrene results in increased expression of RBPMS mRNA	CTD	PMID:22228805
Rbpms	Rat	bis(2-ethylhexyl) phthalate	multiple interactions	ISO	RGD:1623288	6480464	[diethyl phthalate co-treated with Diethylhexyl Phthalate co-treated with diisononyl phthalate co-treated with Dibutyl Phthalate co-treated more ...	CTD	PMID:39150890
Rbpms	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of RBPMS mRNA	CTD	PMID:25181051
Rbpms	Rat	bisphenol A	multiple interactions	ISO	RGD:1342648	6480464	[bisphenol A co-treated with Fulvestrant] results in increased methylation of RBPMS gene	CTD	PMID:31601247
Rbpms	Rat	bisphenol A	decreases methylation	ISO	RGD:1342648	6480464	bisphenol A results in decreased methylation of RBPMS gene	CTD	PMID:31601247
Rbpms	Rat	bisphenol A	increases expression	ISO	RGD:1342648	6480464	bisphenol A results in increased expression of RBPMS protein	CTD	PMID:37567409
Rbpms	Rat	bisphenol F	multiple interactions	ISO	RGD:1342648	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] more ...	CTD	PMID:28628672
Rbpms	Rat	bisphenol F	multiple interactions	ISO	RGD:1623288	6480464	[bisphenol F co-treated with Tretinoin] results in decreased expression of RBPMS mRNA	CTD	PMID:30951980
Rbpms	Rat	bisphenol F	increases expression	ISO	RGD:1623288	6480464	bisphenol F results in increased expression of RBPMS mRNA	CTD	PMID:30951980
Rbpms	Rat	butanal	decreases expression	ISO	RGD:1342648	6480464	butyraldehyde results in decreased expression of RBPMS mRNA	CTD	PMID:26079696
Rbpms	Rat	Butylbenzyl phthalate	multiple interactions	ISO	RGD:1623288	6480464	[diethyl phthalate co-treated with Diethylhexyl Phthalate co-treated with diisononyl phthalate co-treated with Dibutyl Phthalate co-treated more ...	CTD	PMID:39150890
Rbpms	Rat	C60 fullerene	increases expression	EXP		6480464	fullerene C60 results in increased expression of RBPMS mRNA	CTD	PMID:19167457
Rbpms	Rat	cadmium dichloride	increases expression	ISO	RGD:1342648	6480464	Cadmium Chloride results in increased expression of RBPMS mRNA	CTD	PMID:38568856
Rbpms	Rat	calyculin A	decreases expression	ISO	RGD:1623288	6480464	calyculin A results in decreased expression of RBPMS mRNA	CTD	PMID:25270620
Rbpms	Rat	carbon nanotube	decreases expression	ISO	RGD:1623288	6480464	Nanotubes, Carbon results in decreased expression of RBPMS mRNA	CTD	PMID:25554681
Rbpms	Rat	carbon nanotube	increases expression	ISO	RGD:1623288	6480464	Nanotubes, Carbon results in increased expression of RBPMS mRNA	CTD	PMID:25620056
Rbpms	Rat	carnosic acid	multiple interactions	ISO	RGD:1623288	6480464	salvin inhibits the reaction [sodium arsenite results in increased expression of RBPMS mRNA]	CTD	PMID:35202923
Rbpms	Rat	chlordecone	increases expression	ISO	RGD:1623288	6480464	Chlordecone results in increased expression of RBPMS mRNA	CTD	PMID:31084621\|PMID:33711761
Rbpms	Rat	chlordecone	decreases expression	ISO	RGD:1623288	6480464	Chlordecone results in decreased expression of RBPMS mRNA	CTD	PMID:29980752
Rbpms	Rat	chlorpyrifos	multiple interactions	EXP		6480464	[azoxystrobin co-treated with 2-chloro-N-(4-chlorobiphenyl-2-yl)nicotinamide co-treated with Chlorpyrifos co-treated with Glyphosate co-treated with imidacloprid co-treated with more ...	CTD	PMID:33854195
Rbpms	Rat	chlorpyrifos	increases expression	ISO	RGD:1623288	6480464	Chlorpyrifos results in increased expression of RBPMS mRNA	CTD	PMID:37019170
Rbpms	Rat	cisplatin	decreases expression	EXP		6480464	Cisplatin results in decreased expression of RBPMS mRNA	CTD	PMID:22023808
Rbpms	Rat	cisplatin	decreases expression	ISO	RGD:1342648	6480464	Cisplatin results in decreased expression of RBPMS mRNA	CTD	PMID:19561079
Rbpms	Rat	clofibrate	increases expression	ISO	RGD:1623288	6480464	Clofibrate results in increased expression of RBPMS mRNA	CTD	PMID:23811191
Rbpms	Rat	cobalt dichloride	increases expression	ISO	RGD:1342648	6480464	cobaltous chloride results in increased expression of RBPMS mRNA	CTD	PMID:19376846
Rbpms	Rat	copper atom	multiple interactions	ISO	RGD:1623288	6480464	[ATP7A gene mutant form results in increased abundance of Copper] which results in increased expression more ...	CTD	PMID:15467011
Rbpms	Rat	copper(0)	multiple interactions	ISO	RGD:1623288	6480464	[ATP7A gene mutant form results in increased abundance of Copper] which results in increased expression more ...	CTD	PMID:15467011
Rbpms	Rat	crocidolite asbestos	decreases expression	ISO	RGD:1623288	6480464	Asbestos, Crocidolite results in decreased expression of RBPMS mRNA	CTD	PMID:29279043
Rbpms	Rat	Cuprizon	increases expression	EXP		6480464	Cuprizone results in increased expression of RBPMS mRNA	CTD	PMID:26577399
Rbpms	Rat	cyclophosphamide	increases expression	ISO	RGD:1342648	6480464	Cyclophosphamide results in increased expression of RBPMS mRNA	CTD	PMID:17403535
Rbpms	Rat	cyclosporin A	decreases expression	ISO	RGD:1623288	6480464	Cyclosporine results in decreased expression of RBPMS mRNA	CTD	PMID:19770486
Rbpms	Rat	cyclosporin A	decreases expression	ISO	RGD:1342648	6480464	Cyclosporine results in decreased expression of RBPMS mRNA	CTD	PMID:27989131
Rbpms	Rat	dexamethasone	multiple interactions	ISO	RGD:1623288	6480464	[1-Methyl-3-isobutylxanthine co-treated with Dexamethasone co-treated with INS protein] results in increased expression of RBPMS mRNA	CTD	PMID:24848799
Rbpms	Rat	dexamethasone	multiple interactions	ISO	RGD:1342648	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] more ...	CTD	PMID:28628672
Rbpms	Rat	dextran sulfate	decreases expression	ISO	RGD:1623288	6480464	Dextran Sulfate results in decreased expression of RBPMS protein	CTD	PMID:35362542
Rbpms	Rat	dextran sulfate	multiple interactions	ISO	RGD:1623288	6480464	evodiamine inhibits the reaction [Dextran Sulfate results in decreased expression of RBPMS protein]	CTD	PMID:35362542
Rbpms	Rat	diarsenic trioxide	increases expression	ISO	RGD:1342648	6480464	Arsenic Trioxide results in increased expression of RBPMS mRNA	CTD	PMID:20458559
Rbpms	Rat	Dibutyl phosphate	affects expression	ISO	RGD:1342648	6480464	di-n-butylphosphoric acid affects the expression of RBPMS mRNA	CTD	PMID:37042841
Rbpms	Rat	dibutyl phthalate	increases expression	EXP		6480464	Dibutyl Phthalate results in increased expression of RBPMS mRNA	CTD	PMID:21266533
Rbpms	Rat	dibutyl phthalate	multiple interactions	ISO	RGD:1623288	6480464	[diethyl phthalate co-treated with Diethylhexyl Phthalate co-treated with diisononyl phthalate co-treated with Dibutyl Phthalate co-treated more ...	CTD	PMID:39150890
Rbpms	Rat	dichloroacetic acid	increases expression	ISO	RGD:1623288	6480464	Dichloroacetic Acid results in increased expression of RBPMS mRNA	CTD	PMID:28962523
Rbpms	Rat	dicrotophos	increases expression	ISO	RGD:1342648	6480464	dicrotophos results in increased expression of RBPMS mRNA	CTD	PMID:28302478
Rbpms	Rat	diethyl phthalate	multiple interactions	ISO	RGD:1623288	6480464	[diethyl phthalate co-treated with Diethylhexyl Phthalate co-treated with diisononyl phthalate co-treated with Dibutyl Phthalate co-treated more ...	CTD	PMID:39150890
Rbpms	Rat	diisobutyl phthalate	multiple interactions	ISO	RGD:1623288	6480464	[diethyl phthalate co-treated with Diethylhexyl Phthalate co-treated with diisononyl phthalate co-treated with Dibutyl Phthalate co-treated more ...	CTD	PMID:39150890
Rbpms	Rat	diisononyl phthalate	multiple interactions	ISO	RGD:1623288	6480464	[diethyl phthalate co-treated with Diethylhexyl Phthalate co-treated with diisononyl phthalate co-treated with Dibutyl Phthalate co-treated more ...	CTD	PMID:39150890
Rbpms	Rat	dioxygen	increases expression	ISO	RGD:1623288	6480464	Oxygen deficiency results in increased expression of RBPMS mRNA	CTD	PMID:24205000
Rbpms	Rat	dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate	increases expression	ISO	RGD:1342648	6480464	Antimony Potassium Tartrate results in increased expression of RBPMS mRNA	CTD	PMID:17547211
Rbpms	Rat	diquat	increases expression	ISO	RGD:1623288	6480464	Diquat results in increased expression of RBPMS mRNA	CTD	PMID:36851058
Rbpms	Rat	dorsomorphin	multiple interactions	ISO	RGD:1342648	6480464	[NOG protein co-treated with entinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression more ...	CTD	PMID:27188386
Rbpms	Rat	doxorubicin	increases expression	ISO	RGD:1342648	6480464	Doxorubicin results in increased expression of RBPMS mRNA	CTD	PMID:16404146
Rbpms	Rat	elemental selenium	increases expression	ISO	RGD:1342648	6480464	Selenium results in increased expression of RBPMS mRNA	CTD	PMID:19244175
Rbpms	Rat	entinostat	increases expression	ISO	RGD:1342648	6480464	entinostat results in increased expression of RBPMS mRNA	CTD	PMID:26272509
Rbpms	Rat	entinostat	multiple interactions	ISO	RGD:1342648	6480464	[NOG protein co-treated with entinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression more ...	CTD	PMID:27188386
Rbpms	Rat	epoxiconazole	increases expression	ISO	RGD:1623288	6480464	epoxiconazole results in increased expression of RBPMS mRNA	CTD	PMID:35436446
Rbpms	Rat	ethanol	increases expression	ISO	RGD:1623288	6480464	Ethanol results in increased expression of RBPMS mRNA	CTD	PMID:15513904
Rbpms	Rat	Evodiamine	multiple interactions	ISO	RGD:1623288	6480464	evodiamine inhibits the reaction [Dextran Sulfate results in decreased expression of RBPMS protein]	CTD	PMID:35362542
Rbpms	Rat	fenthion	increases expression	ISO	RGD:1623288	6480464	Fenthion results in increased expression of RBPMS mRNA	CTD	PMID:34813904
Rbpms	Rat	finasteride	increases expression	EXP		6480464	Finasteride results in increased expression of RBPMS mRNA	CTD	PMID:24136188
Rbpms	Rat	fonofos	increases methylation	ISO	RGD:1342648	6480464	Fonofos results in increased methylation of RBPMS promoter	CTD	PMID:22847954
Rbpms	Rat	fulvestrant	multiple interactions	ISO	RGD:1342648	6480464	[bisphenol A co-treated with Fulvestrant] results in increased methylation of RBPMS gene	CTD	PMID:31601247
Rbpms	Rat	glyphosate	affects methylation	EXP		6480464	Glyphosate affects the methylation of RBPMS gene	CTD	PMID:35440735
Rbpms	Rat	glyphosate	multiple interactions	EXP		6480464	[azoxystrobin co-treated with 2-chloro-N-(4-chlorobiphenyl-2-yl)nicotinamide co-treated with Chlorpyrifos co-treated with Glyphosate co-treated with imidacloprid co-treated with more ...	CTD	PMID:33854195
Rbpms	Rat	hydrogen peroxide	affects expression	ISO	RGD:1342648	6480464	Hydrogen Peroxide affects the expression of RBPMS mRNA	CTD	PMID:20044591
Rbpms	Rat	imidacloprid	multiple interactions	EXP		6480464	[azoxystrobin co-treated with 2-chloro-N-(4-chlorobiphenyl-2-yl)nicotinamide co-treated with Chlorpyrifos co-treated with Glyphosate co-treated with imidacloprid co-treated with more ...	CTD	PMID:33854195
Rbpms	Rat	indometacin	multiple interactions	ISO	RGD:1342648	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] more ...	CTD	PMID:28628672
Rbpms	Rat	isotretinoin	increases expression	ISO	RGD:1342648	6480464	Isotretinoin results in increased expression of RBPMS mRNA	CTD	PMID:20436886
Rbpms	Rat	manganese atom	multiple interactions	ISO	RGD:1342648	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ...	CTD	PMID:39836092
Rbpms	Rat	manganese(0)	multiple interactions	ISO	RGD:1342648	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ...	CTD	PMID:39836092
Rbpms	Rat	manganese(II) chloride	multiple interactions	ISO	RGD:1342648	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ...	CTD	PMID:39836092
Rbpms	Rat	mercury atom	increases expression	ISO	RGD:1342648	6480464	Mercury results in increased expression of RBPMS mRNA	CTD	PMID:17547211
Rbpms	Rat	mercury(0)	increases expression	ISO	RGD:1342648	6480464	Mercury results in increased expression of RBPMS mRNA	CTD	PMID:17547211
Rbpms	Rat	methidathion	decreases expression	ISO	RGD:1623288	6480464	methidathion results in decreased expression of RBPMS mRNA	CTD	PMID:34813904
Rbpms	Rat	methoxychlor	affects methylation	EXP		6480464	Methoxychlor affects the methylation of RBPMS gene	CTD	PMID:35440735
Rbpms	Rat	methylmercury chloride	decreases expression	ISO	RGD:1342648	6480464	methylmercuric chloride results in decreased expression of RBPMS mRNA	CTD	PMID:23179753
Rbpms	Rat	methylmercury chloride	multiple interactions	ISO	RGD:1342648	6480464	[NOG protein co-treated with methylmercuric chloride co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased more ...	CTD	PMID:27188386
Rbpms	Rat	methylmercury chloride	increases expression	ISO	RGD:1342648	6480464	methylmercuric chloride results in increased expression of RBPMS mRNA	CTD	PMID:23179753\|PMID:26272509\|PMID:28001369
Rbpms	Rat	mitomycin C	decreases expression	ISO	RGD:1623288	6480464	Mitomycin results in decreased expression of RBPMS mRNA	CTD	PMID:25270620
Rbpms	Rat	N,N-diethyl-m-toluamide	multiple interactions	EXP		6480464	[Permethrin co-treated with DEET] results in increased methylation of RBPMS gene	CTD	PMID:33148267
Rbpms	Rat	N-methylformamide	affects expression	ISO	RGD:1623288	6480464	methylformamide affects the expression of RBPMS mRNA; methylformamide analog affects the expression of RBPMS mRNA	CTD	PMID:17040096
Rbpms	Rat	N-nitrosodimethylamine	increases expression	ISO	RGD:1342648	6480464	Dimethylnitrosamine results in increased expression of RBPMS mRNA	CTD	PMID:17547211
Rbpms	Rat	nefazodone	increases expression	EXP		6480464	nefazodone results in increased expression of RBPMS mRNA	CTD	PMID:24136188
Rbpms	Rat	oxaliplatin	multiple interactions	EXP		6480464	[oxaliplatin co-treated with Topotecan] results in increased expression of RBPMS mRNA	CTD	PMID:25729387
Rbpms	Rat	ozone	decreases expression	ISO	RGD:1623288	6480464	Ozone results in decreased expression of RBPMS mRNA	CTD	PMID:33026818
Rbpms	Rat	paracetamol	decreases expression	EXP		6480464	Acetaminophen results in decreased expression of RBPMS mRNA	CTD	PMID:33387578
Rbpms	Rat	parathion	increases methylation	ISO	RGD:1342648	6480464	Parathion results in increased methylation of RBPMS promoter	CTD	PMID:22847954
Rbpms	Rat	perfluorooctane-1-sulfonic acid	multiple interactions	ISO	RGD:1623288	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of RBPMS mRNA; [perfluorooctane sulfonic more ...	CTD	PMID:36331819
Rbpms	Rat	perfluorooctanoic acid	multiple interactions	EXP		6480464	[Zeranol co-treated with perfluorooctanoic acid] results in increased expression of RBPMS mRNA	CTD	PMID:35163327
Rbpms	Rat	permethrin	multiple interactions	EXP		6480464	[Permethrin co-treated with DEET] results in increased methylation of RBPMS gene	CTD	PMID:33148267
Rbpms	Rat	phenobarbital	affects expression	ISO	RGD:1623288	6480464	Phenobarbital affects the expression of RBPMS mRNA	CTD	PMID:23091169
Rbpms	Rat	pirinixic acid	increases expression	ISO	RGD:1623288	6480464	pirinixic acid results in increased expression of RBPMS mRNA	CTD	PMID:18301758\|PMID:18445702\|PMID:20813756\|PMID:23811191
Rbpms	Rat	propiconazole	decreases expression	ISO	RGD:1623288	6480464	propiconazole results in decreased expression of RBPMS mRNA	CTD	PMID:21278054
Rbpms	Rat	rotenone	increases expression	EXP		6480464	Rotenone results in increased expression of RBPMS mRNA	CTD	PMID:28374803
Rbpms	Rat	rotenone	multiple interactions	ISO	RGD:1623288	6480464	Rotenone affects the reaction [NFE2L2 protein affects the expression of RBPMS mRNA]	CTD	PMID:36400285
Rbpms	Rat	SB 431542	multiple interactions	ISO	RGD:1342648	6480464	[LDN 193189 co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide co-treated with FGF2 protein] results in decreased expression of RBPMS more ...	CTD	PMID:27188386\|PMID:37664457
Rbpms	Rat	selenium atom	increases expression	ISO	RGD:1342648	6480464	Selenium results in increased expression of RBPMS mRNA	CTD	PMID:19244175
Rbpms	Rat	silver atom	decreases expression	ISO	RGD:1623288	6480464	Silver results in decreased expression of RBPMS mRNA	CTD	PMID:27131904
Rbpms	Rat	silver(0)	decreases expression	ISO	RGD:1623288	6480464	Silver results in decreased expression of RBPMS mRNA	CTD	PMID:27131904
Rbpms	Rat	sodium arsenite	multiple interactions	ISO	RGD:1623288	6480464	salvin inhibits the reaction [sodium arsenite results in increased expression of RBPMS mRNA]	CTD	PMID:35202923
Rbpms	Rat	sodium arsenite	multiple interactions	ISO	RGD:1342648	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ...	CTD	PMID:39836092
Rbpms	Rat	sodium arsenite	increases expression	ISO	RGD:1342648	6480464	sodium arsenite results in increased expression of RBPMS mRNA	CTD	PMID:38568856
Rbpms	Rat	sodium arsenite	increases expression	ISO	RGD:1623288	6480464	sodium arsenite results in increased expression of RBPMS mRNA	CTD	PMID:35202923
Rbpms	Rat	Soman	increases expression	EXP		6480464	Soman results in increased expression of RBPMS mRNA	CTD	PMID:19281266
Rbpms	Rat	tamoxifen	affects expression	ISO	RGD:1342648	6480464	Tamoxifen affects the expression of RBPMS mRNA	CTD	PMID:14699072
Rbpms	Rat	tamoxifen	affects expression	ISO	RGD:1623288	6480464	Tamoxifen affects the expression of RBPMS mRNA	CTD	PMID:17555576
Rbpms	Rat	terbufos	increases methylation	ISO	RGD:1342648	6480464	terbufos results in increased methylation of RBPMS promoter	CTD	PMID:22847954
Rbpms	Rat	tetrachloromethane	increases expression	ISO	RGD:1623288	6480464	Carbon Tetrachloride results in increased expression of RBPMS mRNA	CTD	PMID:31919559
Rbpms	Rat	tetrachloromethane	decreases expression	EXP		6480464	Carbon Tetrachloride results in decreased expression of RBPMS mRNA	CTD	PMID:33387578
Rbpms	Rat	thiabendazole	multiple interactions	EXP		6480464	[azoxystrobin co-treated with 2-chloro-N-(4-chlorobiphenyl-2-yl)nicotinamide co-treated with Chlorpyrifos co-treated with Glyphosate co-treated with imidacloprid co-treated with more ...	CTD	PMID:33854195
Rbpms	Rat	titanium dioxide	decreases methylation	ISO	RGD:1623288	6480464	titanium dioxide results in decreased methylation of RBPMS promoter	CTD	PMID:35295148
Rbpms	Rat	topotecan	multiple interactions	EXP		6480464	[oxaliplatin co-treated with Topotecan] results in increased expression of RBPMS mRNA	CTD	PMID:25729387
Rbpms	Rat	tremolite asbestos	decreases expression	ISO	RGD:1623288	6480464	tremolite results in decreased expression of RBPMS mRNA	CTD	PMID:29279043
Rbpms	Rat	tributylstannane	increases expression	ISO	RGD:1623288	6480464	tributyltin results in increased expression of RBPMS mRNA	CTD	PMID:24848799
Rbpms	Rat	trichloroethene	increases expression	ISO	RGD:1623288	6480464	Trichloroethylene results in increased expression of RBPMS mRNA	CTD	PMID:19448997
Rbpms	Rat	trichloroethene	affects expression	ISO	RGD:1623288	6480464	Trichloroethylene affects the expression of RBPMS mRNA	CTD	PMID:21135412
Rbpms	Rat	trichostatin A	increases expression	ISO	RGD:1342648	6480464	trichostatin A results in increased expression of RBPMS mRNA	CTD	PMID:24935251
Rbpms	Rat	triptonide	affects expression	ISO	RGD:1623288	6480464	triptonide affects the expression of RBPMS mRNA	CTD	PMID:33045310
Rbpms	Rat	valdecoxib	increases expression	EXP		6480464	valdecoxib results in increased expression of RBPMS mRNA	CTD	PMID:24136188
Rbpms	Rat	valproic acid	decreases expression	ISO	RGD:1342648	6480464	Valproic Acid results in decreased expression of RBPMS mRNA	CTD	PMID:29154799
Rbpms	Rat	valproic acid	multiple interactions	ISO	RGD:1342648	6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased more ...	CTD	PMID:27188386
Rbpms	Rat	valproic acid	increases expression	ISO	RGD:1342648	6480464	Valproic Acid results in increased expression of RBPMS mRNA	CTD	PMID:26272509
Rbpms	Rat	valproic acid	decreases methylation	ISO	RGD:1342648	6480464	Valproic Acid results in decreased methylation of RBPMS gene	CTD	PMID:29154799
Rbpms	Rat	valproic acid	affects expression	ISO	RGD:1342648	6480464	Valproic Acid affects the expression of RBPMS mRNA	CTD	PMID:25979313
Rbpms	Rat	vancomycin	decreases expression	ISO	RGD:1623288	6480464	Vancomycin results in decreased expression of RBPMS mRNA	CTD	PMID:18930951
Rbpms	Rat	vinclozolin	affects expression	EXP		6480464	vinclozolin affects the expression of RBPMS mRNA	CTD	PMID:19015723
Rbpms	Rat	vitamin E	increases expression	ISO	RGD:1342648	6480464	Vitamin E results in increased expression of RBPMS mRNA	CTD	PMID:19244175

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rbpms	Rat	positive regulation of DNA-templated transcription	involved_in	IEA	GO:0003713	1600115	GO_REF:0000108	GOC	GO_REF:0000108
Rbpms	Rat	protein-containing complex assembly	involved_in	IMP		401901235	PMID:37548402	UniProt
Rbpms	Rat	regulation of alternative mRNA splicing, via spliceosome	involved_in	IMP		401901235	PMID:37548402	UniProt
Rbpms	Rat	response to oxidative stress	involved_in	ISO	RGD:1342648	1624291	PMID:26347403	RGD	PMID:26347403
Rbpms	Rat	response to oxidative stress	involved_in	IEA	UniProtKB:Q93062\|ensembl:ENSP00000380486	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Rbpms	Rat	SMAD protein signal transduction	involved_in	ISO	RGD:1342648	1624291	PMID:17099224	RGD	PMID:17099224
Rbpms	Rat	SMAD protein signal transduction	involved_in	IEA	UniProtKB:Q93062\|ensembl:ENSP00000380486	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rbpms	Rat	cytoplasm	located_in	ISO	RGD:1342648	1624291	PMID:17099224	RGD	PMID:17099224
Rbpms	Rat	cytoplasm	located_in	IEA	UniProtKB-SubCell:SL-0086	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Rbpms	Rat	cytoplasm	located_in	IEA	UniProtKB:Q93062\|ensembl:ENSP00000380486	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Rbpms	Rat	cytoplasm	located_in	IEA	UniProtKB-KW:KW-0963	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Rbpms	Rat	cytoplasmic stress granule	located_in	ISO	RGD:1342648	1624291	PMID:24860013, PMID:26347403	RGD	PMID:24860013\|PMID:26347403
Rbpms	Rat	cytoplasmic stress granule	located_in	IEA	UniProtKB-SubCell:SL-0496	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Rbpms	Rat	cytoplasmic stress granule	located_in	IEA	UniProtKB:Q93062\|ensembl:ENSP00000380486	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Rbpms	Rat	cytosol	located_in	ISO	RGD:1342648\|UniProtKB:Q93062-1\|UniProtKB:Q93062-2\|UniProtKB:Q93062-3	1624291		RGD	GO_REF:0000052
Rbpms	Rat	cytosol	located_in	IEA	UniProtKB:Q93062\|ensembl:ENSP00000380486	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Rbpms	Rat	cytosol	located_in	ISO	RGD:1342648	1624291	PMID:24860013	RGD	PMID:24860013
Rbpms	Rat	nucleoplasm	located_in	ISO	RGD:1342648\|UniProtKB:Q93062-1\|UniProtKB:Q93062-2\|UniProtKB:Q93062-3	1624291		RGD	GO_REF:0000052
Rbpms	Rat	nucleoplasm	located_in	IEA	UniProtKB:Q93062\|ensembl:ENSP00000380486	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Rbpms	Rat	nucleus	located_in	IEA	UniProtKB:Q93062\|ensembl:ENSP00000380486	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Rbpms	Rat	nucleus	located_in	ISO	RGD:1342648	1624291	PMID:17099224, PMID:24860013	RGD	PMID:17099224\|PMID:24860013
Rbpms	Rat	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Rbpms	Rat	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Rbpms	Rat	P-body	located_in	IEA	UniProtKB-SubCell:SL-0230	1600115	GO_REF:0000044	UniProt	GO_REF:0000044

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rbpms	Rat	identical protein binding	enables	IMP		401901235	PMID:37548402	UniProt
Rbpms	Rat	molecular adaptor activity	enables	IMP		401901235	PMID:37548402	UniProt
Rbpms	Rat	mRNA 3'-UTR binding	enables	ISO	RGD:1342648	1624291	PMID:24860013	RGD	PMID:24860013
Rbpms	Rat	mRNA 3'-UTR binding	enables	IEA	UniProtKB:Q93062\|ensembl:ENSP00000380486	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Rbpms	Rat	mRNA CDS binding	enables	ISO	RGD:1342648	1624291	PMID:24860013	RGD	PMID:24860013
Rbpms	Rat	mRNA CDS binding	enables	IEA	UniProtKB:Q93062\|ensembl:ENSP00000380486	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Rbpms	Rat	nucleic acid binding	enables	IEA	InterPro:IPR035979	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Rbpms	Rat	pre-mRNA binding	enables	IMP		401901235	PMID:37548402	UniProt
Rbpms	Rat	pre-mRNA intronic binding	enables	ISO	RGD:1342648	1624291	PMID:24860013	RGD	PMID:24860013
Rbpms	Rat	pre-mRNA intronic binding	enables	IEA	UniProtKB:Q93062\|ensembl:ENSP00000380486	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Rbpms	Rat	protein binding	enables	ISO	RGD:1342648	1624291	UniProtKB:A0A0C4DGF1\|UniProtKB:A1A580\|UniProtKB:A1L4F5\|UniProtKB:A2VCK2\|UniProtKB:A5D8V6\|UniProtKB:A8KA13\|UniProtKB:B1AHB0\|UniProtKB:B2R550\|UniProtKB:B4DNA4\|UniProtKB:J3QSH9\|UniProtKB:O00241-2\|UniProtKB:O14503\|UniProtKB:O14531\|UniProtKB:O43189\|UniProtKB:O43251\|UniProtKB:O75603\|UniProtKB:O75896\|UniProtKB:O75909\|UniProtKB:O94955\|UniProtKB:O95231\|UniProtKB:O95947\|UniProtKB:O95967\|UniProtKB:P01344\|UniProtKB:P05813\|UniProtKB:P07498\|UniProtKB:P09022\|UniProtKB:P09565\|UniProtKB:P14678-2\|UniProtKB:P32242\|UniProtKB:P35590\|UniProtKB:P36897\|UniProtKB:P49639\|UniProtKB:P51959\|UniProtKB:P52292\|UniProtKB:P54253\|UniProtKB:P54646\|UniProtKB:P59991\|UniProtKB:P61968\|UniProtKB:P78337\|UniProtKB:P84022\|UniProtKB:P86479\|UniProtKB:Q02930-3\|UniProtKB:Q08117\|UniProtKB:Q08AM8\|UniProtKB:Q0D2K3\|UniProtKB:Q0P5Q0\|UniProtKB:Q0VD86\|UniProtKB:Q13131\|UniProtKB:Q13227\|UniProtKB:Q13444\|UniProtKB:Q13485\|UniProtKB:Q13526\|UniProtKB:Q13554\|UniProtKB:Q13588\|UniProtKB:Q14511\|UniProtKB:Q14687\|UniProtKB:Q14D33\|UniProtKB:Q15038\|UniProtKB:Q15796\|UniProtKB:Q17RB8\|UniProtKB:Q3LI72\|UniProtKB:Q3SYF9\|UniProtKB:Q53HV7\|UniProtKB:Q5T0L3\|UniProtKB:Q5TAL4\|UniProtKB:Q5TAQ9\|UniProtKB:Q66K41\|UniProtKB:Q6DKI2\|UniProtKB:Q6FIE9\|UniProtKB:Q6IN51\|UniProtKB:Q6NSM0\|UniProtKB:Q6NUJ2\|UniProtKB:Q6P1W5\|UniProtKB:Q6P5X5\|UniProtKB:Q6PIY7\|UniProtKB:Q6PKX4\|UniProtKB:Q6RSH7\|UniProtKB:Q6RVD6\|UniProtKB:Q6XQN6\|UniProtKB:Q6XQN6-2\|UniProtKB:Q6ZVT0\|UniProtKB:Q7L273\|UniProtKB:Q7L591\|UniProtKB:Q7Z3K3\|UniProtKB:Q86UW9\|UniProtKB:Q86WG5\|UniProtKB:Q8IUC2\|UniProtKB:Q8IVS8\|UniProtKB:Q8N8I6\|UniProtKB:Q8N9N5\|UniProtKB:Q8N9W6\|UniProtKB:Q8NCR6\|UniProtKB:Q8TES7-6\|UniProtKB:Q8WVV9\|UniProtKB:Q92567\|UniProtKB:Q92734\|UniProtKB:Q96D16\|UniProtKB:Q96EJ4\|UniProtKB:Q96HA1\|UniProtKB:Q96HA8\|UniProtKB:Q96HR4\|UniProtKB:Q96K80\|UniProtKB:Q96KV7\|UniProtKB:Q96LM6\|UniProtKB:Q96MN9\|UniProtKB:Q96NR8\|UniProtKB:Q96PU8\|UniProtKB:Q96SI9\|UniProtKB:Q96SW2\|UniProtKB:Q99706\|UniProtKB:Q99958\|UniProtKB:Q9BQY4\|UniProtKB:Q9BTE1\|UniProtKB:Q9BVN2\|UniProtKB:Q9BVV2\|UniProtKB:Q9BXC9\|UniProtKB:Q9BZS1\|UniProtKB:Q9GZM7-3\|UniProtKB:Q9H0E2\|UniProtKB:Q9H496\|UniProtKB:Q9H5Z6\|UniProtKB:Q9NPC6\|UniProtKB:Q9NQ87\|UniProtKB:Q9NQL9\|UniProtKB:Q9NRY2\|UniProtKB:Q9NTN9-3\|UniProtKB:Q9NWB1\|UniProtKB:Q9NWQ4\|UniProtKB:Q9NWS0\|UniProtKB:Q9NXX0\|UniProtKB:Q9P0T4\|UniProtKB:Q9UBP5\|UniProtKB:Q9UHH9\|UniProtKB:Q9UJX2\|UniProtKB:Q9UQ90\|UniProtKB:Q9Y2K5-2\|UniProtKB:Q9Y4M8\|UniProtKB:Q9Y4X0\|UniProtKB:Q9Y5V3 PMID:16189514, PMID:16713569, PMID:17099224, PMID:21516116, PMID:23088713, PMID:25416956, PMID:29892012, PMID:31515488, PMID:33961781	RGD	PMID:16189514\|PMID:16713569\|PMID:17099224\|PMID:21516116\|PMID:23088713\|PMID:25416956\|PMID:29892012\|PMID:31515488\|PMID:33961781
Rbpms	Rat	protein binding	enables	IPI	UniProtKB:Q96PK6	401901235	PMID:37548402	UniProt
Rbpms	Rat	protein binding	enables	IPI	UniProtKB:P43243	401901235	PMID:37548402	UniProt
Rbpms	Rat	protein binding	enables	IPI	UniProtKB:B5DFF2	401901235	PMID:37548402	UniProt
Rbpms	Rat	protein binding	enables	IPI	UniProtKB:Q9NR56	401901235	PMID:37548402	UniProt
Rbpms	Rat	protein binding	enables	IPI	UniProtKB:A0AV96	401901235	PMID:37548402	UniProt
Rbpms	Rat	protein binding	enables	IPI	UniProtKB:Q9H6T0	401901235	PMID:37548402	UniProt
Rbpms	Rat	protein binding	enables	IPI	UniProtKB:O43251	401901235	PMID:37548402	UniProt
Rbpms	Rat	protein binding	enables	IPI	UniProtKB:Q9BWF3	401901235	PMID:37548402	UniProt
Rbpms	Rat	protein binding	enables	ISO	RGD:1342648,UniProtKB:Q93062-3	1624291	UniProtKB:A0A0C4DGF1\|UniProtKB:A0A0S2Z596\|UniProtKB:A0A0S2Z5K8\|UniProtKB:A0A0S2Z645\|UniProtKB:A5D8V6\|UniProtKB:A7E2Y1-2\|UniProtKB:A8MTA8-2\|UniProtKB:A8MV65-2\|UniProtKB:O43189\|UniProtKB:O43251-10\|UniProtKB:O43741\|UniProtKB:O75603\|UniProtKB:O95947\|UniProtKB:P08631-2\|UniProtKB:P09234\|UniProtKB:P0CG20\|UniProtKB:P23769\|UniProtKB:P27658\|UniProtKB:P28360\|UniProtKB:P42858\|UniProtKB:P52952\|UniProtKB:P54252\|UniProtKB:P54253\|UniProtKB:P55197-2\|UniProtKB:P59990\|UniProtKB:P60329\|UniProtKB:P78337\|UniProtKB:P78424\|UniProtKB:P86480\|UniProtKB:Q02930-3\|UniProtKB:Q03989\|UniProtKB:Q08117-2\|UniProtKB:Q0VD86\|UniProtKB:Q12837\|UniProtKB:Q14119\|UniProtKB:Q14847-2\|UniProtKB:Q15038\|UniProtKB:Q15560\|UniProtKB:Q15915\|UniProtKB:Q16740\|UniProtKB:Q3LI72\|UniProtKB:Q3LI76\|UniProtKB:Q3SY00\|UniProtKB:Q3SY46\|UniProtKB:Q3SYF9\|UniProtKB:Q53HV7-2\|UniProtKB:Q5BKX5-3\|UniProtKB:Q5SWW7\|UniProtKB:Q5T6F2\|UniProtKB:Q69YG0\|UniProtKB:Q6NUJ2\|UniProtKB:Q6PEX3\|UniProtKB:Q6RSH7\|UniProtKB:Q6ZRY4\|UniProtKB:Q6ZT89-3\|UniProtKB:Q7Z3K3\|UniProtKB:Q7Z4W3\|UniProtKB:Q86WV8\|UniProtKB:Q8IUB9\|UniProtKB:Q8IUC1\|UniProtKB:Q8IYB5-2\|UniProtKB:Q8N831\|UniProtKB:Q8NE01\|UniProtKB:Q92567-2\|UniProtKB:Q96G42\|UniProtKB:Q96HB5\|UniProtKB:Q96LM6\|UniProtKB:Q96M29\|UniProtKB:Q96NR8\|UniProtKB:Q96SI9\|UniProtKB:Q99697-2\|UniProtKB:Q9BQY4\|UniProtKB:Q9BUL9\|UniProtKB:Q9BVN2\|UniProtKB:Q9BX46-2\|UniProtKB:Q9BYR8\|UniProtKB:Q9BZE0\|UniProtKB:Q9BZS1\|UniProtKB:Q9H1P6\|UniProtKB:Q9HBE1-4\|UniProtKB:Q9NRQ2\|UniProtKB:Q9NWB1-5\|UniProtKB:Q9NYG5-2\|UniProtKB:Q9P0T4\|UniProtKB:Q9UQ72-2\|UniProtKB:Q9UQM7\|UniProtKB:Q9Y4B4 PMID:24722188, PMID:25910212, PMID:26871637, PMID:27107012, PMID:30886144, PMID:32296183, PMID:32814053	RGD	PMID:24722188\|PMID:25910212\|PMID:26871637\|PMID:27107012\|PMID:30886144\|PMID:32296183\|PMID:32814053
Rbpms	Rat	protein homodimerization activity	enables	ISO	RGD:1342648	1624291	UniProtKB:Q93062 PMID:26347403	RGD	PMID:26347403
Rbpms	Rat	protein homodimerization activity	enables	IEA	UniProtKB:Q93062\|ensembl:ENSP00000380486	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Rbpms	Rat	RNA binding	enables	IEA	UniRule:UR000414619	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Rbpms	Rat	RNA binding	enables	IEA	UniProtKB:Q93062\|ensembl:ENSP00000380486	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Rbpms	Rat	RNA binding	enables	IEA	UniProtKB-KW:KW-0694	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Rbpms	Rat	RNA binding	enables	ISO	RGD:1342648	1624291	PMID:17099224, PMID:26347403	RGD	PMID:17099224\|PMID:26347403
Rbpms	Rat	RNA binding	enables	IEA	InterPro:IPR000504	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Rbpms	Rat	transcription coactivator activity	enables	ISO	RGD:1342648	1624291	PMID:17099224	RGD	PMID:17099224
Rbpms	Rat	transcription coactivator activity	enables	IEA	UniProtKB:Q93062\|ensembl:ENSP00000380486	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3-dimethoxynaphthalene-1,4-dione (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

aconitine (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (EXP,ISO)

alpha-Zearalanol (EXP)

amiodarone (ISO)

antimony(0) (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

azoxystrobin (EXP)

Benoxacor (ISO)

benzo[a]pyrene (EXP,ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

C60 fullerene (EXP)

cadmium dichloride (ISO)

calyculin A (ISO)

carbon nanotube (ISO)

carnosic acid (ISO)

chlordecone (ISO)

chlorpyrifos (EXP,ISO)

cisplatin (EXP,ISO)

clofibrate (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

crocidolite asbestos (ISO)

Cuprizon (EXP)

cyclophosphamide (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

dextran sulfate (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP,ISO)

dichloroacetic acid (ISO)

dicrotophos (ISO)

diethyl phthalate (ISO)

diisobutyl phthalate (ISO)

diisononyl phthalate (ISO)

dioxygen (ISO)

dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate (ISO)

diquat (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

entinostat (ISO)

epoxiconazole (ISO)

ethanol (ISO)

Evodiamine (ISO)

fenthion (ISO)

finasteride (EXP)

fonofos (ISO)

fulvestrant (ISO)

glyphosate (EXP)

hydrogen peroxide (ISO)

imidacloprid (EXP)

indometacin (ISO)

isotretinoin (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

mercury atom (ISO)

mercury(0) (ISO)

methidathion (ISO)

methoxychlor (EXP)

methylmercury chloride (ISO)

mitomycin C (ISO)

N,N-diethyl-m-toluamide (EXP)

N-methylformamide (ISO)

N-nitrosodimethylamine (ISO)

nefazodone (EXP)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP)

parathion (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP)

permethrin (EXP)

phenobarbital (ISO)

pirinixic acid (ISO)

propiconazole (ISO)

rotenone (EXP,ISO)

SB 431542 (ISO)

selenium atom (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

Soman (EXP)

tamoxifen (ISO)

terbufos (ISO)

tetrachloromethane (EXP,ISO)

thiabendazole (EXP)

titanium dioxide (ISO)

topotecan (EXP)

tremolite asbestos (ISO)

tributylstannane (ISO)

trichloroethene (ISO)

trichostatin A (ISO)

triptonide (ISO)

valdecoxib (EXP)

valproic acid (ISO)

vancomycin (ISO)

vinclozolin (EXP)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of DNA-templated transcription (IEA)

protein-containing complex assembly (IMP)

regulation of alternative mRNA splicing, via spliceosome (IMP)

response to oxidative stress (IEA,ISO)

SMAD protein signal transduction (IEA,ISO)

Cellular Component

cytoplasm (IEA,ISO)

cytoplasmic stress granule (IEA,ISO)

cytosol (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IEA,ISO)

P-body (IEA)

Molecular Function

identical protein binding (IMP)

molecular adaptor activity (IMP)

mRNA 3'-UTR binding (IEA,ISO)

mRNA CDS binding (IEA,ISO)

nucleic acid binding (IEA)

pre-mRNA binding (IMP)

pre-mRNA intronic binding (IEA,ISO)

protein binding (IPI,ISO)

protein homodimerization activity (IEA,ISO)

RNA binding (IEA,ISO)

transcription coactivator activity (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Cell-type specific regulator RBPMS switches alternative splicing via higher-order oligomerization and heterotypic interactions with other splicing regulators.	Yang Y, etal., Nucleic Acids Res. 2023 Oct 13;51(18):9961-9982. doi: 10.1093/nar/gkad652.

Additional References at PubMed

PMID:17099224	PMID:19737887	PMID:22658674	PMID:26347403	PMID:31283468

Genomics

Comparative Map Data

Rbpms
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	64,942,159 - 65,098,504 (+)	NCBI		GRCr8
mRatBN7.2	16	58,239,370 - 58,395,424 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	58,239,474 - 58,395,426 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	63,579,457 - 63,713,962 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	66,993,105 - 67,127,638 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	62,213,707 - 62,348,200 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	61,954,569 - 62,109,998 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	61,954,590 - 62,096,497 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	61,618,879 - 61,774,268 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	62,009,626 - 62,163,466 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	16	56,277,529 - 56,412,446 (+)	NCBI		Celera
Cytogenetic Map	16	q12.2-q12.3	NCBI

RBPMS
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	30,384,541 - 30,572,256 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	30,384,511 - 30,572,256 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	30,242,057 - 30,429,773 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	30,361,486 - 30,549,276 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	8	30,361,485 - 30,549,276	NCBI
Celera	8	29,200,833 - 29,388,215 (+)	NCBI		Celera
Cytogenetic Map	8	p12	NCBI
HuRef	8	28,786,611 - 28,974,229 (+)	NCBI		HuRef
CHM1_1	8	30,444,486 - 30,631,917 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	8	30,663,428 - 30,851,701 (+)	NCBI		T2T-CHM13v2.0

Rbpms
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	34,272,671 - 34,419,925 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	34,272,671 - 34,419,891 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	33,782,643 - 33,929,922 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	33,782,643 - 33,929,863 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	34,893,116 - 35,040,313 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	35,249,999 - 35,395,753 (-)	NCBI		MGSCv36	mm8
Celera	8	36,420,353 - 36,511,505 (-)	NCBI		Celera
Cytogenetic Map	8	A4	NCBI
cM Map	8	20.85	NCBI

Rbpms
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955463	6,901,263 - 6,988,870 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955463	6,817,570 - 6,973,393 (+)	NCBI	ChiLan1.0	ChiLan1.0

RBPMS
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	48,944,932 - 49,134,955 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	24,660,519 - 24,850,850 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	29,685,311 - 29,875,614 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	26,876,710 - 27,065,387 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	26,965,830 - 27,065,387 (+)	Ensembl	panpan1.1		panPan2

RBPMS
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	33,788,675 - 33,961,595 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	33,788,781 - 33,960,286 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	34,250,794 - 34,424,085 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	35,817,904 - 35,991,250 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	16	33,916,132 - 34,089,651 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	16	34,486,116 - 34,659,162 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	34,606,907 - 34,780,115 (-)	NCBI		UU_Cfam_GSD_1.0

Rbpms
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	56,959,279 - 57,127,286 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936792	236,503 - 404,510 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936792	236,509 - 404,510 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RBPMS
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	54,539,238 - 54,725,583 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	54,538,583 - 54,725,605 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	61,933,646 - 62,143,596 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RBPMS
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	28,496,583 - 28,684,487 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	28,496,075 - 28,659,907 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666052	13,423,707 - 13,611,941 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rbpms
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624839	7,068,761 - 7,242,159 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624839	7,068,656 - 7,243,627 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Rbpms
765 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	281
Count of miRNA genes:	190
Interacting mature miRNAs:	213
Transcripts:	ENSRNOT00000017883, ENSRNOT00000046138, ENSRNOT00000068011
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2300163	Bmd64	Bone mineral density QTL 64	5.3	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	16	37752156	82752156	Rat
1600378	Arunc4	Aerobic running capacity QTL 4		0.03	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	380245	80345693	Rat
70215	Niddm29	Non-insulin dependent diabetes mellitus QTL 29	3.54		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	16	19004435	75226532	Rat
1578768	Stresp22	Stress response QTL 22	2.8		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	16	35288870	80288870	Rat
737826	Alc11	Alcohol consumption QTL 11	3.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	4227609	60252231	Rat
2302057	Pia29	Pristane induced arthritis QTL 29	3.6	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)	16	21735975	66735975	Rat
7205510	Activ5	Activity QTL 5	3.78	0.00028	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	42396345	84729064	Rat
631525	Pia14	Pristane induced arthritis QTL 14	4.4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	16	55711087	83402471	Rat
8694453	Bw172	Body weight QTL 172	8.33	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	16	24325513	69325513	Rat
7411648	Foco22	Food consumption QTL 22	15	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	52726464	84729064	Rat
1298529	Arunc1	Aerobic running capacity QTL 1	4		exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	31951520	60148445	Rat
2312663	Slep9	Serum leptin concentration QTL 9		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	832236	59492508	Rat
2312660	Bw95	Body weight QTL 95		0.05	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	16	832236	59492508	Rat
6903294	Stl30	Serum triglyceride level QTL 30	2.6	0.0013	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	16	25152793	70152793	Rat
2293690	Bss45	Bone structure and strength QTL 45	5.13	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	16	37752156	82752156	Rat
8694364	Abfw7	Abdominal fat weight QTL 7	12.22	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	16	52726464	84729064	Rat
2312666	Insul16	Insulin level QTL 16		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	16	832236	59492508	Rat
8694429	Bw164	Body weight QTL 164	5	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	16	52726464	84729064	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor diameter (CMO:0001889)	16	17696791	82635055	Rat
2312669	Stl23	Serum triglyceride level QTL 23		0.01	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	16	832236	59492508	Rat

Markers in Region

RH144171

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	58,376,634 - 58,376,810 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	62,091,207 - 62,091,382	NCBI	Rnor6.0
Rnor_5.0	16	61,755,477 - 61,755,652	UniSTS	Rnor5.0
RGSC_v3.4	16	62,145,819 - 62,145,994	UniSTS	RGSC3.4
Celera	16	56,414,074 - 56,414,249	UniSTS
RH 3.4 Map	16	541.7	UniSTS
Cytogenetic Map	16	q12.3	UniSTS

AI011370

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	58,388,631 - 58,388,876 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	62,103,206 - 62,103,450	NCBI	Rnor6.0
Rnor_5.0	16	61,767,476 - 61,767,720	UniSTS	Rnor5.0
RGSC_v3.4	16	62,157,818 - 62,158,062	UniSTS	RGSC3.4
Celera	16	56,426,075 - 56,426,319	UniSTS
RH 3.4 Map	16	542.0	UniSTS
Cytogenetic Map	16	q12.3	UniSTS

AI231834

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	58,395,106 - 58,395,304 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	62,109,681 - 62,109,878	NCBI	Rnor6.0
Rnor_5.0	16	61,773,951 - 61,774,148	UniSTS	Rnor5.0
RGSC_v3.4	16	62,164,293 - 62,164,490	UniSTS	RGSC3.4
Celera	16	56,432,550 - 56,432,747	UniSTS
RH 3.4 Map	16	560.2	UniSTS
Cytogenetic Map	16	q12.3	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001271244	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253238	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253240	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253241	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771303	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275646	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010058306	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010058307	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010058308	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_596485	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_596486	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473970	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000017883 ⟹ ENSRNOP00000017883

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	58,239,474 - 58,375,007 (+)	Ensembl
Rnor_6.0 Ensembl	16	61,954,590 - 62,089,579 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000068011 ⟹ ENSRNOP00000063629

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	58,239,474 - 58,394,005 (+)	Ensembl
Rnor_6.0 Ensembl	16	61,954,809 - 62,096,497 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113205 ⟹ ENSRNOP00000080717

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	58,239,474 - 58,394,001 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116989 ⟹ ENSRNOP00000088378

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	58,239,874 - 58,394,001 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119714 ⟹ ENSRNOP00000081138

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	58,239,474 - 58,395,426 (+)	Ensembl

RefSeq Acc Id:

NM_001271244 ⟹ NP_001258173

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	64,942,609 - 65,078,085 (+)	NCBI
mRatBN7.2	16	58,239,474 - 58,375,007 (+)	NCBI
Rnor_6.0	16	61,954,590 - 62,089,579 (+)	NCBI
Rnor_5.0	16	61,618,879 - 61,774,268 (+)	NCBI
Celera	16	56,277,529 - 56,412,446 (+)	NCBI

Sequence:

show sequence

GGCGAGAGAAAGCGCGCTGCGTGCGGCCCCGCTGCCCAGAGCCTGCCAGCTGCGCGCCCTCGGC
CGCTCGGGTCCTAACCGCGCCCGCCGCCTCGCCTCCTCCGCCTCGGCCGCGTCCCGACTCCCGG
GCTCGCCCGGCCTCTCGGAGGTCCCCGCCCGACTCCGCTCTCCGCTGTGCCGCCCGGCTCCAGC
CCCGCAGCCCGCCCCGGGGGGAAGGTAGCAGCGGGCGAGCGCGCCCTCGCCTCCAGCCCCGCGC
CCCAGCCCCGCGCGGCGACGAAGGACCGGGAAGATGAACGGCGGCGGCAAAGCCGAGAAGGAGA
ACACCCCGAGCGAGGCCAACCTTCAGGAGGAGGAGGTCCGGACCCTGTTTGTCAGTGGCCTGCC
TCTGGACATCAAGCCCCGAGAGCTGTACCTGCTCTTCAGGCCATTCAAGGGCTATGAAGGTTCT
CTCATAAAGCTCACATCTAAACAGCCCGTAGGCTTTGTCAGTTTCGACAGTCGCTCAGAAGCAG
AGGCCGCAAAGAATGCTTTGAACGGCATCCGCTTCGATCCTGAAATCCCGCAAACACTACGACT
AGAGTTTGCTAAGGCAAACACGAAGATGGCCAAGAACAAACTCGTAGGGACTCCAAACCCCAGT
ACTCCTCTGCCCAACACTGTACCTCAGTTCATTGCCAGGGAGCCATATGAGCTCACAGTACCTG
CACTTTACCCCAGTAGCCCTGAAGTGTGGGCCCCGTACCCTCTGTACCCAGCGGAGTTAGCGCC
TGCTCTTCCTCCTCCTGCCGCTTTCACCTATCCCGCTTCACTGCATGCCCAGTGTTTCTCTCCA
GAGGCAAAGCCCAACACACCTGTCTTTTGTCCACTTCTTCAGCAAATTAGATTTGTCTCTGGGA
ATGTGTTTGTCACGTATCAACCCACTGCAGACCAACAGAGGGAGCTCCCATGTTGAATTTATTA
GCAAGCCTCCCCTGCCCCCTTTTGCAAAAACTATTTCTTGATGATATTTGAGAGATTTCAATAA
AAATTTTAATCAGAGCAAAAAAAAAATGGTCTCAAG

hide sequence

RefSeq Acc Id:

XM_006253238 ⟹ XP_006253300

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	64,942,159 - 65,098,504 (+)	NCBI
mRatBN7.2	16	58,239,370 - 58,395,424 (+)	NCBI
Rnor_6.0	16	61,954,570 - 62,109,998 (+)	NCBI
Rnor_5.0	16	61,618,879 - 61,774,268 (+)	NCBI

Sequence:

show sequence

GGGAGGGGAGGAGGGAGAAAGGCGAGAGAAAGCGCGCTGCGTGCGGCCCCGCTGCCCAGAGCCT
GCCAGCTGCGCGCCCTCGGCCGCTCGGGTCCTAACCGCGCCCGCCGCCTCGCCTCCTCCGCCTC
GGCCGCGTCCCGACTCCCGGGCTCGCCCGGCCTCTCGGAGGTCCCCGCCCGACTCCGCTCTCCG
CTGTGCCGCCCGGCTCCAGCCCCGCAGCCCGCCCCGGGGGGAAGGTAGCAGCGGGCGAGCGCGC
CCTCGCCTCCAGCCCCGCGCCCCAGCCCCGCGCGGCGACGAAGGACCGGGAAGATGAACGGCGG
CGGCAAAGCCGAGAAGGAGAACACCCCGAGCGAGGCCAACCTTCAGGAGGAGGAGGTCCGGACC
CTGTTTGTCAGTGGCCTGCCTCTGGACATCAAGCCCCGAGAGCTGTACCTGCTCTTCAGGCCAT
TCAAGGGCTATGAAGGTTCTCTCATAAAGCTCACATCTAAACAGCCCGTAGGCTTTGTCAGTTT
CGACAGTCGCTCAGAAGCAGAGGCCGCAAAGAATGCTTTGAACGGCATCCGCTTCGATCCTGAA
ATCCCGCAAACACTACGACTAGAGTTTGCTAAGGCAAACACGAAGATGGCCAAGAACAAACTCG
TAGGGACTCCAAACCCCAGTACTCCTCTGCCCAACACTGTACCTCAGTTCATTGCCAGGGAGCC
ATATGCGCTGGCTCCCTCCCTCCGAGGCTACTTCCCAGGGCTGGAAGTCCCGGCAGTTCTGCTG
AGGCTGTGCTTGAAAACACCTTGCCCAGTTTTGATCCCTTCAAGACTTCATAACAGCCTCTATC
ACACATCTGTTTTCCTCAAAGAAAAAAAAATATATAATAAAATGTGTTTTACTCTTTTACACTG
TATAATTTTAAGAAATGTGTTATTTGTGAATGCATGGTCTGACATTTCTGTACAGTTTGGAGAC
ATGAGCAGTAAAGCCAGGATGGTTAGTATTTTTATAACAGACATTTTAAGAGTGGACAGATGGA
TTCTTTACACTAGGCTACATCACGACTTTTGTTTGATTTTTGAATGCTTTTAATGGTGTTTATC
TTATTTTTCTTCTGAAATAAGATGCATGTTTGAAACATATCTCTAAATAGCATCCAAGTTTCCA
CAATTGTGTTGTGAATGTGTGGACTCCCTCTGCCTGGCCCAGAGTCAGCCCCATTAGTAGCTGG
GTGTAGAAATGCGCTTCTGCAGTATTAGCTCTGTAATCCTGGCTCCCAGGGATCTCCCTGCAAG
ACAATCAGTGCCCCAAAGCATCTGCCATTGTAGTGTATAAACCACTGGGCAAAGACTACTTAGG
TAATGTCTCTGAAAACCATGGCCACTCTGGCTGTGACTATACAAACTGTGCCCGGGGACATATT
GACATTCTATGCTTGTGTCGTTTAGGATAGCACCCTCAGAGTGTGCAACTTAATATATATCACC
CAACTTCCAGAAACTGTTCCGCAGTGGAACGAACTGCAAGGTCCACCTTCCATTTATGTGGTTG
GCCTTTAGTTTGGAGGCAAACATGCCTCAGGCTTTGCCCACTCAGCCTGCGCTGGGCATCACAT
CTCTCAAGTGGGTCAGCAAAGCGTTGGCCTGCCTGAGTAGCTAGCTGTTCTGGTCTGGCAGCCA
TGTCAGTCAGACCATCCATCACATTCTCTGGAACGCTACATGCTCATCTTGAGACTACCTACTA
CATTGCAGTGTGGGGCATGAAACTTGGCCATGTGCGATGAACACTGTTACCCTTGCTTCAAGAC
CTCTTCAAAGCCCAAAGTTAGTCTTGTGTTGTGTGCCAACACATTCCCAGAGGCTGTGATGGCA
GTCTTCCCGCTCCTCAAACGAGCCATGCATACTACGTTGACCTCAGAATTTCCAGCTGCTGATA
CTACTAGACATAATCACAATCTTTGTATCTTTGTTATTGATCTGCTTGTATTGTGTTGAAAACG
TCATATTTTAATGAATATTTCGGTGGTTTGGGAGGGTTATTTCATTATTTTTCAAGAGAAGTAA
AAAATGTCAAGTTTTTAAAGGTTATTAAAAAGAGAAACACCAAGGCCTGTAATAAGGGCCTTTT
CTCTGTAAACTAGAGGCCGGGGCAGGCAGCACTGGGGAATTAGCATCCAGGTGGTGTTCCGTGC
CACTTGACTGTAAGACTCCTCTACTTGCTTTAAAGAGAGTGAGCCACTTATCATCGATTATGCT
TTTATAATTGTGTAAAGGTACTTTTGTATTGTCATTTTTTTAAAAGATAATAAAAGTTTATTCC
AGCCATTA

hide sequence

RefSeq Acc Id:

XM_006253240 ⟹ XP_006253302

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	64,942,159 - 65,097,090 (+)	NCBI
mRatBN7.2	16	58,239,405 - 58,394,010 (+)	NCBI
Rnor_6.0	16	61,954,574 - 62,108,582 (+)	NCBI
Rnor_5.0	16	61,618,879 - 61,774,268 (+)	NCBI

Sequence:

show sequence

GGGGAGGAGGGAGAAAGGCGAGAGAAAGCGCGCTGCGTGCGGCCCCGCTGCCCAGAGCCTGCCA
GCTGCGCGCCCTCGGCCGCTCGGGTCCTAACCGCGCCCGCCGCCTCGCCTCCTCCGCCTCGGCC
GCGTCCCGACTCCCGGGCTCGCCCGGCCTCTCGGAGGTCCCCGCCCGACTCCGCTCTCCGCTGT
GCCGCCCGGCTCCAGCCCCGCAGCCCGCCCCGGGGGGAAGGTAGCAGCGGGCGAGCGCGCCCTC
GCCTCCAGCCCCGCGCCCCAGCCCCGCGCGGCGACGAAGGACCGGGAAGATGAACGGCGGCGGC
AAAGCCGAGAAGGAGAACACCCCGAGCGAGGCCAACCTTCAGGAGGAGGAGGTCCGGACCCTGT
TTGTCAGTGGCCTGCCTCTGGACATCAAGCCCCGAGAGCTGTACCTGCTCTTCAGGCCATTCAA
GGGCTATGAAGGTTCTCTCATAAAGCTCACATCTAAACAGCCCGTAGGCTTTGTCAGTTTCGAC
AGTCGCTCAGAAGCAGAGGCCGCAAAGAATGCTTTGAACGGCATCCGCTTCGATCCTGAAATCC
CGCAAACACTACGACTAGAGTTTGCTAAGGCAAACACGAAGATGGCCAAGAACAAACTCGTAGG
GACTCCAAACCCCAGTACTCCTCTGCCCAACACTGTACCTCAGTTCATTGCCAGGGAGCCATAT
GAGCTCACAGTACCTGCACTTTACCCCAGTAGCCCTGAAGTGTGGGCCCCGTACCCTCTGTACC
CAGCGGAGTTAGCGCCTGCTCTTCCTCCTCCTGCCGCTTTCACCTATCCCGCTTCACTGCATGC
CCAGATGCGCTGGCTCCCTCCCTCCGAGGCTACTTCCCAGGGCTGGAAGTCCCGGCAGTTCTGC
TGAGGCTGTGCTTGAAAACACCTTGCCCAGTTTTGATCCCTTCAAGACTTCATAACAGCCTCTA
TCACACATCTGTTTTCCTCAAAGAAAAAAAAATATATAATAAAATGTGTTTTACTCTTTTACAC
TG

hide sequence

RefSeq Acc Id:

XM_006253241 ⟹ XP_006253303

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	64,942,159 - 65,098,504 (+)	NCBI
mRatBN7.2	16	58,239,375 - 58,394,010 (+)	NCBI
Rnor_6.0	16	61,954,571 - 62,108,579 (+)	NCBI
Rnor_5.0	16	61,618,879 - 61,774,268 (+)	NCBI

Sequence:

show sequence

GGAGGGGAGGAGGGAGAAAGGCGAGAGAAAGCGCGCTGCGTGCGGCCCCGCTGCCCAGAGCCTG
CCAGCTGCGCGCCCTCGGCCGCTCGGGTCCTAACCGCGCCCGCCGCCTCGCCTCCTCCGCCTCG
GCCGCGTCCCGACTCCCGGGCTCGCCCGGCCTCTCGGAGGTCCCCGCCCGACTCCGCTCTCCGC
TGTGCCGCCCGGCTCCAGCCCCGCAGCCCGCCCCGGGGGGAAGGTAGCAGCGGGCGAGCGCGCC
CTCGCCTCCAGCCCCGCGCCCCAGCCCCGCGCGGCGACGAAGGACCGGGAAGATGAACGGCGGC
GGCAAAGCCGAGAAGGAGAACACCCCGAGCGAGGCCAACCTTCAGGAGGAGGAGGTCCGGACCC
TGTTTGTCAGTGGCCTGCCTCTGGACATCAAGCCCCGAGAGCTGTACCTGCTCTTCAGGCCATT
CAAGGGCTATGAAGGTTCTCTCATAAAGCTCACATCTAAACAGCCCGTAGGCTTTGTCAGTTTC
GACAGTCGCTCAGAAGCAGAGGCCGCAAAGAATGCTTTGAACGGCATCCGCTTCGATCCTGAAA
TCCCGCAAACACTACGACTAGAGTTTGCTAAGGCAAACACGAAGATGGCCAAGAACAAACTCGT
AGGGACTCCAAACCCCAGTACTCCTCTGCCCAACACTGTACCTCAGTTCATTGCCAGGGAGCCA
TATGCGCTGGCTCCCTCCCTCCGAGGCTACTTCCCAGGGCTGGAAGTCCCGGCAGTTCTGCTGA
GGCTGTGTCTCGGGTGTGTGATGGCGGCTGCAATCTGTCTTGTGGGTATTAATGCGGTCTTCAC
TGGTGGCGACTGTCATCCAGCTGTTCTGCAAAACTGGAGCTTGCTGGCTTGAAAACACCTTGCC
CAGTTTTGATCCCTTCAAGACTTCATAACAGCCTCTATCACACATCTGTTTTCCTCAAAGAAAA
AAAAATATATAATAAAATGTGTTTTACTCTTTTACA

hide sequence

RefSeq Acc Id:

XM_063275646 ⟹ XP_063131716

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	64,942,159 - 65,092,128 (+)	NCBI

RefSeq Acc Id:

XR_010058306

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	64,942,159 - 65,097,090 (+)	NCBI

RefSeq Acc Id:

XR_010058307

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	64,942,159 - 65,097,090 (+)	NCBI

RefSeq Acc Id:

XR_010058308

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	65,042,679 - 65,097,090 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001258173	(Get FASTA)	NCBI Sequence Viewer
	XP_006253300	(Get FASTA)	NCBI Sequence Viewer
	XP_006253302	(Get FASTA)	NCBI Sequence Viewer
	XP_006253303	(Get FASTA)	NCBI Sequence Viewer
	XP_063131716	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	A0A8I6G705	(Get FASTA)	NCBI Sequence Viewer
	EDM09150	(Get FASTA)	NCBI Sequence Viewer
	EDM09151	(Get FASTA)	NCBI Sequence Viewer
	EDM09152	(Get FASTA)	NCBI Sequence Viewer
	EDM09153	(Get FASTA)	NCBI Sequence Viewer
	EDM09154	(Get FASTA)	NCBI Sequence Viewer
	EDM09155	(Get FASTA)	NCBI Sequence Viewer
	EDM09156	(Get FASTA)	NCBI Sequence Viewer
	EDM09157	(Get FASTA)	NCBI Sequence Viewer
	EDM09158	(Get FASTA)	NCBI Sequence Viewer
	EDM09159	(Get FASTA)	NCBI Sequence Viewer
	EDM09160	(Get FASTA)	NCBI Sequence Viewer
	EDM09161	(Get FASTA)	NCBI Sequence Viewer
	EDM09162	(Get FASTA)	NCBI Sequence Viewer
	EDM09163	(Get FASTA)	NCBI Sequence Viewer
	EDM09164	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000017883
	ENSRNOP00000017883.4
	ENSRNOP00000080717.1
	ENSRNOP00000081138
	ENSRNOP00000081138.1
	ENSRNOP00000111391

RefSeq Acc Id:

NP_001258173 ⟸ NM_001271244

- UniProtKB:

F2Z3S5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MNGGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVG
FVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFI
AREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAAFTYPASLHAQCFSPEAKPNTPVFCP
LLQQIRFVSGNVFVTYQPTADQQRELPC

hide sequence

RefSeq Acc Id:

XP_006253300 ⟸ XM_006253238

- Peptide Label:

isoform X1

- Sequence:

show sequence

MNGGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVG
FVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFI
AREPYALAPSLRGYFPGLEVPAVLLRLCLKTPCPVLIPSRLHNSLYHTSVFLKEKKIYNKMCFT
LLHCIILRNVLFVNAWSDISVQFGDMSSKARMVSIFITDILRVDRWILYTRLHHDFCLIFECF

hide sequence

RefSeq Acc Id:	XP_006253303 ⟸ XM_006253241
- Peptide Label:	isoform X3
- Sequence:	show sequence MNGGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVG FVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFI AREPYALAPSLRGYFPGLEVPAVLLRLCLGCVMAAAICLVGINAVFTGGDCHPAVLQNWSLLA hide sequence

RefSeq Acc Id:	XP_006253302 ⟸ XM_006253240
- Peptide Label:	isoform X2
- UniProtKB:	F1M9Y9 (UniProtKB/Swiss-Prot), A0A8I5ZR01 (UniProtKB/Swiss-Prot), A0A8I6G705 (UniProtKB/TrEMBL), A0A8I6AAP9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNGGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVG FVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFI AREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAAFTYPASLHAQMRWLPPSEATSQGWK SRQFC hide sequence

Ensembl Acc Id:

ENSRNOP00000063629 ⟸ ENSRNOT00000068011

Ensembl Acc Id:

ENSRNOP00000017883 ⟸ ENSRNOT00000017883

Ensembl Acc Id:

ENSRNOP00000081138 ⟸ ENSRNOT00000119714

Ensembl Acc Id:

ENSRNOP00000080717 ⟸ ENSRNOT00000113205

Ensembl Acc Id:

ENSRNOP00000088378 ⟸ ENSRNOT00000116989

RefSeq Acc Id:	XP_063131716 ⟸ XM_063275646
- Peptide Label:	isoform X2
- UniProtKB:	F1M9Y9 (UniProtKB/Swiss-Prot), A0A8I6G705 (UniProtKB/Swiss-Prot), A0A8I5ZR01 (UniProtKB/Swiss-Prot), A0A8I6AAP9 (UniProtKB/TrEMBL)

Protein Domains

RRM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M9Y9-F1-model_v2	AlphaFold	F1M9Y9	1-220	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700140

Promoter ID:

EPDNEW_R10664

Type:

multiple initiation site

Name:

Rbpms_1

Description:

RNA binding protein with multiple splicing

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	16	61,954,627 - 61,954,687	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1561067	AgrOrtholog
BioCyc Gene	G2FUF-11127	BioCyc
Ensembl Genes	ENSRNOG00000013328	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000017883	ENTREZGENE
	ENSRNOT00000017883.6	UniProtKB/Swiss-Prot
	ENSRNOT00000113205	ENTREZGENE
	ENSRNOT00000113205.1	UniProtKB/Swiss-Prot
	ENSRNOT00000119714	ENTREZGENE
	ENSRNOT00000119714.1	UniProtKB/Swiss-Prot
	ENSRNOT00000144605	ENTREZGENE
Gene3D-CATH	3.30.70.330	UniProtKB/Swiss-Prot
InterPro	Nucleotide-bd_a/b_plait_sf	UniProtKB/Swiss-Prot
	RBD_domain_sf	UniProtKB/Swiss-Prot
	RRM_dom	UniProtKB/Swiss-Prot
KEGG Report	rno:498642	UniProtKB/Swiss-Prot
NCBI Gene	498642	ENTREZGENE
PANTHER	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	UniProtKB/Swiss-Prot
Pfam	RRM_1	UniProtKB/Swiss-Prot
PhenoGen	Rbpms	PhenoGen
PROSITE	RRM	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000013328	RatGTEx
SMART	RRM	UniProtKB/Swiss-Prot
Superfamily-SCOP	RNA-binding domain, RBD	UniProtKB/Swiss-Prot
UniProt	A0A8I5ZR01	ENTREZGENE
	A0A8I6AAP9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6G705	ENTREZGENE
	F1M9Y9	ENTREZGENE
	F2Z3S5	ENTREZGENE, UniProtKB/TrEMBL
	RBPMS_RAT	UniProtKB/Swiss-Prot
UniProt Secondary	A0A8I5ZR01	UniProtKB/Swiss-Prot
	F1M9Y9	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-01-15	Rbpms	RNA binding protein, mRNA processing factor	Rbpms	RNA binding protein with multiple splicing	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1561067	similar to RNA binding protein gene with multiple splicing	RGD1561067_predicted	similar to RNA binding protein gene with multiple splicing (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1561067_predicted	similar to RNA binding protein gene with multiple splicing (predicted)	LOC498642	similar to RNA binding protein gene with multiple splicing	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC498642	similar to RNA binding protein gene with multiple splicing			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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