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ONTOLOGY REPORT - ANNOTATIONS


Term:lipoprotein biosynthetic process
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Accession:GO:0042158 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of any conjugated, water-soluble protein in which the covalently attached nonprotein group consists of a lipid or lipids.
Synonyms:exact_synonym: lipoprotein anabolism;   lipoprotein biosynthesis;   lipoprotein formation;   lipoprotein synthesis



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lipoprotein biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca1 ATP binding cassette subfamily A member 1 acts_upstream_of_or_within IMP
ISO
IEP
MGI:1935192 (PMID:12859204), (PMID:15520446) RGD PMID:12859204 PMID:15520446 PMID:14993246 PMID:21554872 RGD:1358264, RGD:21408554 NCBI chr 5:67,678,267...67,801,162
Ensembl chr 5:67,681,297...67,801,170
JBrowse link
G Apoa1 apolipoprotein A1 acts_upstream_of_or_within ISO MGI:1857127|MGI:88057 (PMID:14595002), (PMID:16245952) RGD PMID:14595002 PMID:16245952 NCBI chr 8:46,527,251...46,529,035
Ensembl chr 8:46,527,144...46,529,035
JBrowse link
G Apob apolipoprotein B involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:103298 (PMID:13130124)
Ensembl
RGD
PMID:13130124 GO_REF:0000107 NCBI chr 6:30,844,386...30,883,983
Ensembl chr 6:30,844,368...30,892,497
JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 acts_upstream_of_or_within ISO MGI:88052 (PMID:13130124) RGD PMID:13130124 NCBI chr 4:155,800,030...155,828,515
Ensembl chr 4:155,800,887...155,827,390
JBrowse link
G Apoe apolipoprotein E involved_in
acts_upstream_of_or_within
IEA
ISO
ISS
GO_REF:0000107
(PMID:23620513)
GO_REF:0000024
MGI:88049 (PMID:14595002)
Ensembl
RGD
UniProt
PMID:14595002 PMID:23620513 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:79,353,924...79,357,852
Ensembl chr 1:79,353,916...79,357,932
JBrowse link
G Ins2 insulin 2 involved_in ISO (PMID:8069456) RGD PMID:8069456 NCBI chr 1:197,843,277...197,992,522
Ensembl chr 1:197,843,281...197,864,775
JBrowse link
G Lcat lecithin cholesterol acyltransferase involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:16245952)
Ensembl
RGD
PMID:16245952 GO_REF:0000107 NCBI chr19:33,834,748...33,838,214
Ensembl chr19:33,834,403...33,838,231
JBrowse link
attachment of GPI anchor to protein term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpaa1 glycosylphosphatidylinositol anchor attachment 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:108,051,896...108,055,479
Ensembl chr 7:108,051,861...108,055,484
JBrowse link
G Pigk phosphatidylinositol glycan anchor biosynthesis, class K involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:241,630,021...241,715,493
Ensembl chr 2:241,630,053...241,716,134
JBrowse link
G Pigs phosphatidylinositol glycan anchor biosynthesis, class S involved_in ISO
IBA
(MGI:3688056|PMID:11483512)
GO_REF:0000033
RGD
GO_Central
PMID:11483512 GO_REF:0000033 MGI:3688056 NCBI chr10:63,222,611...63,237,190
Ensembl chr10:63,222,572...63,237,187
JBrowse link
G Pigt phosphatidylinositol glycan anchor biosynthesis, class T involved_in ISO
IBA
(MGI:3688056|PMID:11483512)
GO_REF:0000033
RGD
GO_Central
PMID:11483512 GO_REF:0000033 MGI:3688056 NCBI chr 3:153,227,749...153,236,922
Ensembl chr 3:153,227,420...153,236,887
JBrowse link
G Pigu phosphatidylinositol glycan anchor biosynthesis, class U involved_in IEA
IBA
ISO
GO_REF:0000002
GO_REF:0000118
GO_REF:0000033
GO_REF:0000107
(PMID:12802054)
InterPro
TreeGrafter
GO_Central
Ensembl
RGD
PMID:12802054 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:143,784,831...143,881,268
Ensembl chr 3:143,784,832...143,880,807
JBrowse link
GPI anchor biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07038703.1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr  X:54,564,018...54,565,271 JBrowse link
G Cwh43 cell wall biogenesis 43 C-terminal homolog involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:34,754,279...34,800,530
Ensembl chr14:34,754,289...34,800,814
JBrowse link
G Dpm1 dolichyl-phosphate mannosyltransferase subunit 1, catalytic involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:10835346), (PMID:9535917)
(PMID:9535917)
GO_REF:0000033
(PMID:9535917), (PMID:9724629)
RGD
GO_Central
PMID:9535917 PMID:9724629 PMID:10835346 GO_REF:0000033 NCBI chr 3:156,919,979...156,939,522
Ensembl chr 3:156,919,979...156,939,536
JBrowse link
G Dpm2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory involved_in
acts_upstream_of_or_within
TAS
IBA
IEA
ISO
IDA
GO_REF:0000033
GO_REF:0000107
(PMID:10835346), (PMID:16162815)
PMID:9724629
GO_Central
Ensembl
RGD
PMID:10835346 PMID:16162815 PMID:9724629 PMID:9724629 GO_REF:0000033 GO_REF:0000107, RGD:69827, RGD:69827 NCBI chr 3:15,855,952...15,858,867
Ensembl chr 3:15,856,182...15,869,165
Ensembl chr 3:15,856,182...15,869,165
JBrowse link
G Dpm3 dolichyl-phosphate mannosyltransferase subunit 3, regulatory involved_in ISO
IBA
(PMID:10835346)
GO_REF:0000033
RGD
GO_Central
PMID:10835346 GO_REF:0000033 NCBI chr 2:174,676,532...174,677,047
Ensembl chr 2:174,676,363...174,677,668
Ensembl chr15:174,676,363...174,677,668
JBrowse link
G Gpaa1 glycosylphosphatidylinositol anchor attachment 1 TAS RGD PMID:10702226 RGD:1331364 NCBI chr 7:108,051,896...108,055,479
Ensembl chr 7:108,051,861...108,055,484
JBrowse link
G Mppe1 metallophosphoesterase 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000043
(PMID:29374258)
UniProt
RGD
PMID:29374258 GO_REF:0000024 GO_REF:0000043 NCBI chr18:60,763,418...60,781,553
Ensembl chr18:60,763,419...60,781,553
JBrowse link
G Pgap1 post-GPI attachment to proteins inositol deacylase 1 IMP RGD PMID:14734546 RGD:1303970 NCBI chr 9:55,975,574...56,044,325
Ensembl chr 9:55,975,667...56,044,464
JBrowse link
G Pgap2 post-GPI attachment to proteins 2 involved_in IMP
IEA
IBA
ISO
PMID:16407401
GO_REF:0000118
GO_REF:0000033
GO_REF:0000043
(PMID:29374258)
TreeGrafter
GO_Central
UniProt
RGD
PMID:29374258 PMID:16407401 GO_REF:0000033 GO_REF:0000043 GO_REF:0000118, RGD:8553507 NCBI chr 1:156,591,540...156,618,116
Ensembl chr 1:156,591,615...156,618,114
JBrowse link
G Pgap3 post-GPI attachment to proteins phospholipase 3 involved_in ISO
IBA
(PMID:29374258)
GO_REF:0000033
RGD
GO_Central
PMID:29374258 GO_REF:0000033 NCBI chr10:83,387,113...83,399,357
Ensembl chr10:83,387,113...83,398,628
JBrowse link
G Pgap4 post-GPI attachment to proteins GalNAc transferase 4 involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(PMID:29374258)
UniProt
GO_Central
RGD
PMID:29374258 GO_REF:0000024 GO_REF:0000033 NCBI chr 5:63,931,916...63,947,004
Ensembl chr 5:63,930,682...63,951,716
JBrowse link
G Piga phosphatidylinositol glycan anchor biosynthesis, class A involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000041
MGI:3652879 (PMID:8611683)
GO_REF:0000033
UniProt
RGD
GO_Central
PMID:8611683 GO_REF:0000033 GO_REF:0000041 NCBI chr  X:30,043,033...30,055,861
Ensembl chr  X:30,042,343...30,055,804
JBrowse link
G Pigb phosphatidylinositol glycan anchor biosynthesis, class B involved_in ISO
IBA
(PMID:8861954)
GO_REF:0000033
RGD
GO_Central
PMID:8861954 GO_REF:0000033 NCBI chr 8:73,751,756...73,775,679
Ensembl chr 8:73,751,798...73,775,679
JBrowse link
G Pigc phosphatidylinositol glycan anchor biosynthesis, class C involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000041
(PMID:16162815), (PMID:27694521)
UniProt
RGD
PMID:16162815 PMID:27694521 GO_REF:0000024 GO_REF:0000041 NCBI chr13:74,343,619...74,346,148
Ensembl chr13:74,296,854...74,346,211
JBrowse link
G Pigf phosphatidylinositol glycan anchor biosynthesis, class F involved_in ISO
IBA
IEA
(PMID:33386993)
GO_REF:0000033
GO_REF:0000041
(MGI:1860649|PMID:10781593)
RGD
GO_Central
UniProt
PMID:10781593 PMID:33386993 GO_REF:0000033 GO_REF:0000041 MGI:1860649 NCBI chr 6:7,589,584...7,617,719
Ensembl chr 6:7,589,570...7,639,675
JBrowse link
G Pigg phosphatidylinositol glycan anchor biosynthesis, class G acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:15632136)
GO_REF:0000041
RGD
UniProt
PMID:15632136 GO_REF:0000041 NCBI chr14:1,404,911...1,433,199
Ensembl chr14:1,406,798...1,433,187
JBrowse link
G Pigh phosphatidylinositol glycan anchor biosynthesis, class H involved_in ISO
IBA
IEA
(PMID:16162815)
GO_REF:0000033
GO_REF:0000041
RGD
GO_Central
UniProt
PMID:16162815 GO_REF:0000033 GO_REF:0000041 NCBI chr 6:97,874,903...97,897,188
Ensembl chr 6:97,882,903...97,897,142
JBrowse link
G Pigl phosphatidylinositol glycan anchor biosynthesis, class L IDA RGD PMID:9188481 RGD:729509 NCBI chr10:47,142,160...47,199,892
Ensembl chr10:47,141,780...47,200,145
JBrowse link
G Pigm phosphatidylinositol glycan anchor biosynthesis, class M involved_in IDA
IBA
IEA
GO_REF:0000033
GO_REF:0000041
GO_Central
UniProt
RGD
PMID:11226175 GO_REF:0000033 GO_REF:0000041, RGD:70624 NCBI chr13:84,838,329...84,842,026
Ensembl chr13:84,838,175...84,843,381
JBrowse link
G Pign phosphatidylinositol glycan anchor biosynthesis, class N involved_in IEA
IBA
GO_REF:0000041
GO_REF:0000033
UniProt
GO_Central
GO_REF:0000033 GO_REF:0000041 NCBI chr13:21,659,092...21,812,932
Ensembl chr13:21,662,455...21,806,790
JBrowse link
G Pigo phosphatidylinositol glycan anchor biosynthesis, class O involved_in ISO
IBA
IEA
(MGI:1860649|PMID:10781593)
GO_REF:0000033
GO_REF:0000041
RGD
GO_Central
UniProt
PMID:10781593 GO_REF:0000033 GO_REF:0000041 MGI:1860649 NCBI chr 5:57,244,721...57,256,252
Ensembl chr 5:57,245,166...57,254,146
JBrowse link
G Pigp phosphatidylinositol glycan anchor biosynthesis, class P involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:16162815), (PMID:28334793)
(PMID:10944123)
GO_REF:0000033
RGD
GO_Central
PMID:10944123 PMID:16162815 PMID:28334793 GO_REF:0000033 NCBI chr11:33,682,943...33,689,111
Ensembl chr11:33,682,948...33,689,321
JBrowse link
G Pigq phosphatidylinositol glycan anchor biosynthesis, class Q involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:16162815)
PomBase:SPBC30D10.11|SGD:S000003448 (PMID:10373468), (PMID:9729469)
GO_REF:0000033
RGD
GO_Central
PMID:9729469 PMID:10373468 PMID:16162815 GO_REF:0000033 NCBI chr10:14,942,571...14,958,584
Ensembl chr10:14,942,577...14,958,584
JBrowse link
G Pigu phosphatidylinositol glycan anchor biosynthesis, class U involved_in ISO (PMID:15034568) RGD PMID:15034568 NCBI chr 3:143,784,831...143,881,268
Ensembl chr 3:143,784,832...143,880,807
JBrowse link
G Pigv phosphatidylinositol glycan anchor biosynthesis, class V involved_in ISO
IBA
IEA
UniProtKB:P38211 (PMID:15623507), (PMID:15720390)
GO_REF:0000033
GO_REF:0000041
RGD
GO_Central
UniProt
PMID:15623507 PMID:15720390 GO_REF:0000033 GO_REF:0000041 NCBI chr 5:145,889,642...145,901,533
Ensembl chr 5:145,889,646...145,901,533
JBrowse link
G Pigw phosphatidylinositol glycan anchor biosynthesis, class W involved_in IEA
IBA
GO_REF:0000041
GO_REF:0000033
UniProt
GO_Central
GO_REF:0000033 GO_REF:0000041 NCBI chr10:69,746,996...69,782,656
Ensembl chr10:69,748,789...69,790,475
JBrowse link
G Pigx phosphatidylinositol glycan anchor biosynthesis, class X involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr11:68,687,126...68,703,067
Ensembl chr11:68,687,093...68,703,472
JBrowse link
G Pigy phosphatidylinositol glycan anchor biosynthesis, class Y acts_upstream_of_or_within ISO (PMID:16162815) RGD PMID:16162815 NCBI chr 8:20,689,621...20,691,863
Ensembl chr 8:20,689,502...20,692,585
JBrowse link
G Pigz phosphatidylinositol glycan anchor biosynthesis, class Z involved_in ISO UniProtKB:Q04174 (PMID:15208306) RGD PMID:15208306 NCBI chr11:68,831,847...68,851,798 JBrowse link
G Slc30a5 solute carrier family 30 member 5 acts_upstream_of_positive_effect ISO (PMID:35525268) RGD PMID:35525268 NCBI chr 2:31,945,745...31,975,969
Ensembl chr 2:31,945,729...31,975,934
JBrowse link
N-terminal peptidyl-glycine N-myristoylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nmt2 N-myristoyltransferase 2 TAS RGD PMID:11731439 RGD:1323839 NCBI chr17:74,917,833...74,964,788
Ensembl chr17:74,917,833...74,961,080
JBrowse link
N-terminal protein myristoylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nmt2 N-myristoyltransferase 2 TAS RGD PMID:11731439 RGD:1323839 NCBI chr17:74,917,833...74,964,788
Ensembl chr17:74,917,833...74,961,080
JBrowse link
negative regulation of N-terminal protein palmitoylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hhatl hedgehog acyltransferase-like involved_in ISO
IBA
(MGI:3772109|PMID:18081866)
GO_REF:0000033
RGD
GO_Central
PMID:18081866 GO_REF:0000033 MGI:3772109 NCBI chr 8:121,447,001...121,454,070
Ensembl chr 8:121,447,002...121,454,001
JBrowse link
negative regulation of protein lipidation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbi diazepam binding inhibitor involved_in ISO (PMID:21079819) RGD PMID:21079819 NCBI chr13:31,241,466...31,249,853
Ensembl chr13:31,206,988...31,268,693
JBrowse link
positive regulation of protein lipidation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gba1 glucosylceramidase beta 1 involved_in ISO UniProtKB:P37840 (PMID:26392287) RGD PMID:26392287 NCBI chr 2:174,609,437...174,615,457
Ensembl chr 2:174,609,403...174,618,263
JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:25495476)
GO_REF:0000107
GO_Central
RGD
Ensembl
PMID:25495476 GO_REF:0000024 GO_REF:0000107 NCBI chr13:39,355,698...39,429,154
Ensembl chr13:39,352,247...39,429,169
JBrowse link
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in ISO
IEA
ISS
(PMID:25495476)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
GO_Central
PMID:25495476 GO_REF:0000024 GO_REF:0000107 NCBI chr13:96,757,430...96,828,930
Ensembl chr13:96,757,460...96,829,478
JBrowse link
G Svip small VCP interacting protein involved_in ISO
IEA
(PMID:21909394)
GO_REF:0000107
RGD
Ensembl
PMID:21909394 GO_REF:0000107 NCBI chr 1:101,587,128...101,592,818
Ensembl chr 1:101,587,128...101,593,116
JBrowse link
preassembly of GPI anchor in ER membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pigl phosphatidylinositol glycan anchor biosynthesis, class L involved_in IDA
ISO
PMID:10085243
(PMID:10085243)
RGD PMID:10085243 PMID:10085243 RGD:401901217 NCBI chr10:47,142,160...47,199,892
Ensembl chr10:47,141,780...47,200,145
JBrowse link
regulation of protein lipidation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg101 autophagy related 101 involved_in ISO
IEA
(PMID:19225151)
GO_REF:0000107
(MGI:6810791|PMID:19225151)
RGD
Ensembl
PMID:19225151 GO_REF:0000107 MGI:6810791 NCBI chr 7:132,398,477...132,407,643
Ensembl chr 7:132,398,483...132,407,633
JBrowse link
G Atg13 autophagy related 13 involved_in ISO (PMID:19225151)
(MGI:6810791|PMID:19225151)
RGD PMID:19225151 MGI:6810791 NCBI chr 3:77,647,069...77,681,028
Ensembl chr 3:77,645,790...77,681,043
JBrowse link
G Rabl3 RAB, member of RAS oncogene family-like 3 involved_in ISO (PMID:31406347) RGD PMID:31406347 NCBI chr11:63,153,281...63,182,240
Ensembl chr11:63,152,792...63,182,671
JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in ISO (PMID:19225151)
(MGI:6810791|PMID:19225151)
RGD PMID:19225151 MGI:6810791 NCBI chr 5:13,161,648...13,225,560
Ensembl chr 5:13,161,648...13,225,560
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in ISO (PMID:19225151)
(MGI:6810791|PMID:19225151)
RGD PMID:19225151 MGI:6810791 NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20292
    metabolic process 11720
      organic substance metabolic process 11221
        macromolecule metabolic process 9473
          macromolecule biosynthetic process 7370
            lipoprotein biosynthetic process 52
              lipoprotein biosynthetic process via N-acyl transfer 0
              lipoprotein biosynthetic process via diacylglyceryl transfer 0
              lipoprotein biosynthetic process via signal peptide cleavage 0
              protein lipidation + 45
Path 2
Term Annotations click to browse term
  biological_process 20292
    metabolic process 11720
      organic substance metabolic process 11221
        organonitrogen compound metabolic process 5790
          protein metabolic process 4698
            lipoprotein metabolic process 86
              lipoprotein biosynthetic process 52
                lipoprotein biosynthetic process via N-acyl transfer 0
                lipoprotein biosynthetic process via diacylglyceryl transfer 0
                lipoprotein biosynthetic process via signal peptide cleavage 0
                protein lipidation + 45
paths to the root