Pigt (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 3 | 173,647,104 - 173,656,269 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 3 | 153,227,749 - 153,236,922 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 3 | 153,227,420 - 153,236,887 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 3 | 157,037,716 - 157,046,909 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 3 | 165,536,673 - 165,545,866 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 3 | 163,280,316 - 163,289,509 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 3 | 160,945,556 - 160,954,738 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 3 | 160,945,359 - 160,954,739 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 3 | 167,125,843 - 167,135,024 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 3 | 155,519,010 - 155,528,168 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 3 | 155,425,065 - 155,434,205 (+) | NCBI | | | | | Celera | 3 | 151,839,073 - 151,848,231 (+) | NCBI | | Celera | | | Cytogenetic Map | 3 | q42 | NCBI | | | | |
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PIGT (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 20 | 45,416,141 - 45,426,241 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 20 | 45,416,084 - 45,456,934 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 20 | 44,044,781 - 44,054,881 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 20 | 43,478,138 - 43,488,298 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 20 | 43,478,191 - 43,488,295 | NCBI | | | | | Celera | 20 | 40,753,217 - 40,763,395 (+) | NCBI | | Celera | | | Cytogenetic Map | 20 | q13.12 | NCBI | | | | | HuRef | 20 | 40,786,200 - 40,796,368 (+) | NCBI | | HuRef | | | CHM1_1 | 20 | 43,947,245 - 43,957,423 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 20 | 47,152,004 - 47,162,091 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Pigt (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 2 | 164,339,461 - 164,350,221 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 2 | 164,339,440 - 164,350,221 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 2 | 164,497,090 - 164,508,301 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 2 | 164,497,520 - 164,508,301 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 2 | 164,323,025 - 164,333,801 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 2 | 164,188,770 - 164,198,971 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 2 | 170,434,562 - 170,445,144 (+) | NCBI | | Celera | | | Cytogenetic Map | 2 | H3 | NCBI | | | | | cM Map | 2 | 85.17 | NCBI | | | | |
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Pigt (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955445 | 11,915,225 - 11,925,820 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955445 | 11,916,898 - 11,925,578 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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PIGT (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 21 | 51,149,094 - 51,161,615 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 20 | 51,142,202 - 51,154,723 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 20 | 41,749,034 - 41,759,131 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 20 | 42,838,789 - 42,848,911 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 20 | 42,838,789 - 42,870,907 (+) | Ensembl | panpan1.1 | | panPan2 | |
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PIGT (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 24 | 32,706,476 - 32,715,169 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 24 | 32,706,028 - 32,715,168 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 24 | 32,351,378 - 32,360,087 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 24 | 33,416,860 - 33,425,570 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 24 | 33,416,013 - 33,452,701 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 24 | 32,678,027 - 32,686,710 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 24 | 32,793,634 - 32,802,348 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 24 | 33,337,907 - 33,346,620 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Pigt (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024408640 | 192,017,491 - 192,027,500 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936514 | 7,470,922 - 7,481,199 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936514 | 7,471,134 - 7,481,183 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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PIGT (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 17 | 47,735,088 - 47,750,195 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 17 | 47,735,339 - 47,750,052 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 17 | 53,432,162 - 53,446,882 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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PIGT (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 2 | 18,408,789 - 18,419,186 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 2 | 18,408,758 - 18,419,103 (-) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666050 | 67,050,443 - 67,060,921 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Pigt (Heterocephalus glaber - naked mole-rat) |
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