Pigg (phosphatidylinositol glycan anchor biosynthesis, class G) - Rat Genome Database

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Gene: Pigg (phosphatidylinositol glycan anchor biosynthesis, class G) Rattus norvegicus
Analyze
Symbol: Pigg
Name: phosphatidylinositol glycan anchor biosynthesis, class G
RGD ID: 1560335
Description: Predicted to have CP2 mannose-ethanolamine phosphotransferase activity. Predicted to be involved in GPI anchor biosynthetic process. Predicted to localize to endoplasmic reticulum. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human PIGG (phosphatidylinositol glycan anchor biosynthesis class G); PARTICIPATES IN glycosylphosphatidylinositol anchor biosynthetic pathway; INTERACTS WITH bisphenol A; endosulfan; 3-isobutyl-1-methyl-7H-xanthine (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Also known as: GPI ethanolamine phosphate transferase 2; GPI ethanolamine phosphate transferase 2-like; LOC100910143; LOC305626; RGD1560335; similar to GPI7
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2141,404,911 - 1,433,199 (-)NCBI
Rnor_6.0 Ensembl142,410,342 - 2,438,592 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl141,567,723 - 1,595,972 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0141,567,713 - 1,596,004 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0142,409,267 - 2,438,716 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4141,954,300 - 1,980,867 (-)NCBIRGSC3.4rn4RGSC3.4
Celera141,426,753 - 1,455,040 (-)NCBICelera
Cytogenetic Map14p22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:15632090   PMID:15632136   PMID:19946888  


Genomics

Comparative Map Data
Pigg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2141,404,911 - 1,433,199 (-)NCBI
Rnor_6.0 Ensembl142,410,342 - 2,438,592 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl141,567,723 - 1,595,972 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0141,567,713 - 1,596,004 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0142,409,267 - 2,438,716 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4141,954,300 - 1,980,867 (-)NCBIRGSC3.4rn4RGSC3.4
Celera141,426,753 - 1,455,040 (-)NCBICelera
Cytogenetic Map14p22NCBI
PIGG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl4499,210 - 540,200 (+)EnsemblGRCh38hg38GRCh38
GRCh384499,210 - 540,200 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh374492,999 - 533,989 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364483,010 - 523,312 (+)NCBINCBI36hg18NCBI36
Celera4434,691 - 474,916 (+)NCBI
Cytogenetic Map4p16.3NCBI
HuRef4464,465 - 504,599 (+)NCBIHuRef
CHM1_14492,782 - 533,509 (+)NCBICHM1_1
Pigg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395108,460,679 - 108,497,225 (+)NCBIGRCm39mm39
GRCm39 Ensembl5108,460,475 - 108,497,221 (+)Ensembl
GRCm385108,312,813 - 108,349,359 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5108,312,609 - 108,349,355 (+)EnsemblGRCm38mm10GRCm38
MGSCv375108,741,944 - 108,777,798 (+)NCBIGRCm37mm9NCBIm37
MGSCv365108,553,227 - 108,589,081 (+)NCBImm8
Celera5105,432,736 - 105,468,607 (+)NCBICelera
Cytogenetic Map5FNCBI
Pigg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955514120,287 - 151,827 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955514119,804 - 152,603 (+)NCBIChiLan1.0ChiLan1.0
PIGG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14521,807 - 561,790 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4521,807 - 561,790 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v04499,795 - 540,453 (+)NCBIMhudiblu_PPA_v0panPan3
PIGG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1391,811,681 - 91,849,530 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl391,812,875 - 91,849,446 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha394,276,480 - 94,314,342 (-)NCBI
ROS_Cfam_1.0392,810,466 - 92,848,390 (-)NCBI
UMICH_Zoey_3.1391,982,042 - 92,019,851 (-)NCBI
UNSW_CanFamBas_1.0392,037,225 - 92,075,030 (-)NCBI
UU_Cfam_GSD_1.0392,419,417 - 92,457,240 (-)NCBI
Pigg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528568,819,639 - 68,861,625 (-)NCBI
SpeTri2.0NW_00493647722,524,227 - 22,563,536 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIGG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl820,646 - 44,414 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1821,437 - 44,415 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PIGG
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12748,243,098 - 48,286,642 (-)NCBI
ChlSab1.1 Ensembl2748,241,534 - 48,286,607 (-)Ensembl
Pigg
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475526,505,042 - 26,538,392 (-)NCBI

Position Markers
AI145020  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2141,405,195 - 1,405,380 (+)MAPPER
Rnor_6.0142,410,624 - 2,410,808NCBIRnor6.0
Rnor_6.0141,567,998 - 1,568,182NCBIRnor6.0
Rnor_5.0141,563,229 - 1,563,413UniSTSRnor5.0
Rnor_5.0142,409,552 - 2,409,736UniSTSRnor5.0
RGSC_v3.4141,952,911 - 1,953,095UniSTSRGSC3.4
Celera141,427,038 - 1,427,222UniSTS
Cytogenetic Map14p22UniSTS
AI235602  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2141,425,876 - 1,426,090 (+)MAPPER
Rnor_6.0142,431,305 - 2,431,518NCBIRnor6.0
Rnor_6.0141,588,679 - 1,588,892NCBIRnor6.0
Rnor_5.0142,430,233 - 2,430,446UniSTSRnor5.0
Rnor_5.0141,583,910 - 1,584,123UniSTSRnor5.0
RGSC_v3.4141,973,592 - 1,973,805UniSTSRGSC3.4
Celera141,447,715 - 1,447,928UniSTS
RH 3.4 Map1432.5UniSTS
Cytogenetic Map14p22UniSTS
BM389617  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2141,453,347 - 1,453,531 (+)MAPPER
Rnor_6.0142,458,776 - 2,458,959NCBIRnor6.0
Rnor_6.0141,616,150 - 1,616,333NCBIRnor6.0
Rnor_5.0142,457,704 - 2,457,887UniSTSRnor5.0
Rnor_5.0141,611,381 - 1,611,564UniSTSRnor5.0
RGSC_v3.4142,001,063 - 2,001,246UniSTSRGSC3.4
Celera141,475,179 - 1,475,362UniSTS
RH 3.4 Map1425.9UniSTS
Cytogenetic Map14p22UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300159Bmd61Bone mineral density QTL 615.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14127597761Rat
2300183Bmd60Bone mineral density QTL 605.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14127597761Rat
619619Rf4Renal disease susceptibility QTL 44.10.002total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14134403399Rat
9589814Gluco67Glucose level QTL 674.540.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14141333960Rat
7411573Bw139Body weight QTL 1394.70.001body mass (VT:0001259)body weight gain (CMO:0000420)14141333960Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14142766285Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:141
Count of miRNA genes:96
Interacting mature miRNAs:105
Transcripts:ENSRNOT00000072386, ENSRNOT00000075415
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system reproductive system
High
Medium
Low
Below cutoff 1 6

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_002728071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003751315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005493073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005493074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC103314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000072386   ⟹   ENSRNOP00000067732
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl142,410,342 - 2,438,592 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000075415   ⟹   ENSRNOP00000066161
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl141,567,723 - 1,595,972 (-)Ensembl
RefSeq Acc Id: XM_002728071   ⟹   XP_002728117
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0142,410,339 - 2,438,627 (-)NCBI
Rnor_5.0142,409,267 - 2,438,716 (-)NCBI
RGSC_v3.4141,954,300 - 1,980,867 (-)RGD
Sequence:
RefSeq Acc Id: XM_003751315   ⟹   XP_003751363
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2141,404,911 - 1,433,199 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006250514   ⟹   XP_006250576
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2141,404,911 - 1,433,199 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006250515   ⟹   XP_006250577
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2141,404,911 - 1,433,192 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006250516   ⟹   XP_006250578
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2141,411,314 - 1,433,199 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006250517   ⟹   XP_006250579
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2141,404,911 - 1,433,199 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006250590   ⟹   XP_006250652
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0142,410,339 - 2,438,630 (-)NCBI
Rnor_5.0142,409,267 - 2,438,716 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006250591   ⟹   XP_006250653
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0142,410,339 - 2,438,627 (-)NCBI
Rnor_5.0142,409,267 - 2,438,716 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006250592   ⟹   XP_006250654
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0142,416,746 - 2,438,628 (-)NCBI
Rnor_5.0142,409,267 - 2,438,716 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006250593   ⟹   XP_006250655
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0142,410,339 - 2,438,628 (-)NCBI
Rnor_5.0142,409,267 - 2,438,716 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769955   ⟹   XP_008768177
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0142,416,317 - 2,438,628 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769956   ⟹   XP_008768178
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0142,423,667 - 2,438,627 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039092608   ⟹   XP_038948536
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2141,404,911 - 1,428,973 (-)NCBI
RefSeq Acc Id: XR_005493073
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2141,407,189 - 1,433,199 (-)NCBI
RefSeq Acc Id: XR_005493074
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2141,416,054 - 1,433,199 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_002728117   ⟸   XM_002728071
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006250655   ⟸   XM_006250593
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006250652   ⟸   XM_006250590
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006250653   ⟸   XM_006250591
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006250654   ⟸   XM_006250592
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008768177   ⟸   XM_008769955
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_008768178   ⟸   XM_008769956
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: ENSRNOP00000067732   ⟸   ENSRNOT00000072386
RefSeq Acc Id: ENSRNOP00000066161   ⟸   ENSRNOT00000075415
RefSeq Acc Id: XP_006250579   ⟸   XM_006250517
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006250576   ⟸   XM_006250514
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_003751363   ⟸   XM_003751315
- Peptide Label: isoform X1
- UniProtKB: M0RDM7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250577   ⟸   XM_006250515
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_038948536   ⟸   XM_039092608
- Peptide Label: isoform X6
RefSeq Acc Id: XP_006250578   ⟸   XM_006250516
- Peptide Label: isoform X4
- Sequence:

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560335 AgrOrtholog
  RGD:6499629 AgrOrtholog
Ensembl Genes ENSRNOG00000049895 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000050374 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000066161 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000067732 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000072386 UniProtKB/TrEMBL
  ENSRNOT00000075415 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 3.40.720.10 UniProtKB/TrEMBL
InterPro Alkaline_phosphatase_core UniProtKB/TrEMBL
  Phosphodiest/P_Trfase UniProtKB/TrEMBL
  PIG-G_N UniProtKB/TrEMBL
  PIGG/GPI7 UniProtKB/TrEMBL
KEGG Report rno:100910143 UniProtKB/TrEMBL
  rno:305626 UniProtKB/TrEMBL
NCBI Gene Pigg ENTREZGENE
PANTHER PTHR23072 UniProtKB/TrEMBL
Pfam Phosphodiest UniProtKB/TrEMBL
PhenoGen Pigg PhenoGen
Superfamily-SCOP SSF53649 UniProtKB/TrEMBL
UniProt M0RDM7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Pigg  phosphatidylinositol glycan anchor biosynthesis, class G  LOC100910143  GPI ethanolamine phosphate transferase 2-like  Data Merged 737654 PROVISIONAL
2012-07-05 LOC100910143  GPI ethanolamine phosphate transferase 2-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-02-28 Pigg  phosphatidylinositol glycan anchor biosynthesis, class G  RGD1560335_predicted  similar to GPI7 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1560335_predicted  similar to GPI7 (predicted)  LOC305626  similar to GPI7  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC305626  similar to GPI7      Symbol and Name status set to provisional 70820 PROVISIONAL