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ONTOLOGY REPORT - ANNOTATIONS

Term:rough endoplasmic reticulum
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Accession:GO:0005791 term browser browse the term
Definition:The rough (or granular) endoplasmic reticulum (ER) has ribosomes adhering to the outer surface; the ribosomes are the site of translation of the mRNA for those proteins which are either to be retained within the cisternae (ER-resident proteins), the proteins of the lysosomes, or the proteins destined for export from the cell. Glycoproteins undergo their initial glycosylation within the cisternae.
Synonyms:exact_synonym: RER;   rough ER
 xref: NIF_Subcellular:sao1881364067;   Wikipedia:Endoplasmic_reticulum#Rough_endoplasmic_reticulum


show annotations for term's descendants           Sort by:
rough endoplasmic reticulum term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Car4 carbonic anhydrase 4 located_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:84,848,580...84,856,880
Ensembl chr11:84,848,612...84,856,870 		JBrowse link
G Ccdc47 coiled-coil domain containing 47 located_in IDA (PMID:25009997) MGI PMID:25009997 NCBI chr11:106,090,086...106,107,349
Ensembl chr11:106,088,234...106,107,170 		JBrowse link
G Cdkal1 CDK5 regulatory subunit associated protein 1-like 1 located_in IDA (PMID:21841312) MGI PMID:21841312 NCBI chr13:29,375,729...30,039,665
Ensembl chr13:29,375,729...30,039,657 		JBrowse link
G Ckap4 cytoskeleton-associated protein 4 located_in
is_active_in		 ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr10:84,362,169...84,369,752
Ensembl chr10:84,362,169...84,369,926 		JBrowse link
G Epha5 Eph receptor A5 located_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 5:84,199,024...84,565,677
Ensembl chr 5:84,202,620...84,565,241 		JBrowse link
G F12 coagulation factor XII (Hageman factor) is_active_in IBA GO_Central GO_REF:0000033 NCBI chr13:55,565,771...55,574,617
Ensembl chr13:55,565,771...55,574,606 		JBrowse link
G Fkrp fukutin related protein located_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 7:16,543,192...16,550,657
Ensembl chr 7:16,543,171...16,550,657 		JBrowse link
G H13 histocompatibility 13 located_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:152,511,292...152,550,590
Ensembl chr 2:152,511,381...152,550,590 		JBrowse link
G Hgfac hepatocyte growth factor activator located_in
is_active_in		 IDA
IBA		 (PMID:12923239) MGI
GO_Central		 PMID:12923239 GO_REF:0000033 NCBI chr 5:35,198,853...35,205,805
Ensembl chr 5:35,198,853...35,205,805 		JBrowse link
G Lin28a lin-28 homolog A located_in IDA (MGI:5795814|PMID:23102813) UniProt PMID:23102813 MGI:5795814 NCBI chr 4:133,730,641...133,746,504
Ensembl chr 4:133,730,641...133,746,152 		JBrowse link
G Lrat lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase) located_in
is_active_in		 ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000096 MGI:4417868 NCBI chr 3:82,799,889...82,811,281
Ensembl chr 3:82,799,886...82,811,280 		JBrowse link
G Myc myelocytomatosis oncogene located_in ISO (PMID:18816594) UniProt PMID:18816594 NCBI chr15:61,857,190...61,862,210
Ensembl chr15:61,857,240...61,862,223 		JBrowse link
G Pkm pyruvate kinase, muscle located_in IDA (MGI:6331015|PMID:28575669) UniProt PMID:28575669 MGI:6331015 NCBI chr 9:59,563,859...59,586,655
Ensembl chr 9:59,563,651...59,586,658 		JBrowse link
G Psen1 presenilin 1 located_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr12:83,734,926...83,781,869
Ensembl chr12:83,734,926...83,781,973 		JBrowse link
G Ptgds prostaglandin D2 synthase (brain) located_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:25,356,723...25,360,080
Ensembl chr 2:25,356,721...25,360,058 		JBrowse link
G Rab14 RAB14, member RAS oncogene family located_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 2:35,070,217...35,091,132
Ensembl chr 2:35,070,217...35,091,132 		JBrowse link
G Rangrf RAN guanine nucleotide release factor located_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:68,863,310...68,866,011
Ensembl chr11:68,863,310...68,866,011 		JBrowse link
G Rpl4 ribosomal protein L4 located_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 9:64,080,159...64,085,805
Ensembl chr 9:64,080,657...64,085,948 		JBrowse link
G Rpn1 ribophorin I located_in IDA (PMID:25009997) MGI PMID:25009997 NCBI chr 6:88,061,455...88,082,286
Ensembl chr 6:88,061,464...88,082,286 		JBrowse link
G Sppl3 signal peptide peptidase 3 located_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 5:115,149,204...115,236,849
Ensembl chr 5:115,149,196...115,236,849 		JBrowse link
G Stx17 syntaxin 17 NOT|located_in ISO (PMID:10930465) UniProt PMID:10930465 NCBI chr 4:48,124,912...48,186,507
Ensembl chr 4:48,124,915...48,186,507 		JBrowse link
G Suco SUN domain containing ossification factor located_in IDA (MGI:4452525|PMID:20440000) UniProt PMID:20440000 MGI:4452525 NCBI chr 1:161,643,681...161,704,506
Ensembl chr 1:161,643,683...161,704,251 		JBrowse link
G Tmcc1 transmembrane and coiled coil domains 1 located_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 6:115,995,572...116,170,485
Ensembl chr 6:115,995,572...116,170,447 		JBrowse link
G Tmem97 transmembrane protein 97 located_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:78,432,643...78,441,561
Ensembl chr11:78,432,643...78,441,603 		JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A located_in IDA (MGI:5751631|PMID:26255671) UniProt PMID:26255671 MGI:5751631 NCBI chr 4:125,012,207...125,021,674
Ensembl chr 4:125,012,216...125,021,633 		JBrowse link
cytoplasmic side of rough endoplasmic reticulum membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alg5 ALG5 dolichyl-phosphate beta-glucosyltransferase is_active_in ISO (PMID:10359825) UniProt PMID:10359825 NCBI chr 3:54,642,960...54,657,216
Ensembl chr 3:54,642,960...54,658,739 		JBrowse link
G Epm2a epilepsy, progressive myoclonic epilepsy, type 2 gene alpha located_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:11,218,435...11,335,408
Ensembl chr10:11,219,148...11,335,388 		JBrowse link
G Gnrh1 gonadotropin releasing hormone 1 located_in ISO gonadotropin-releasing hormone-associated peptide MGI
RGD		 PMID:2183089 GO_REF:0000096 MGI:4417868 RGD:9685146 NCBI chr14:67,982,717...67,986,889
Ensembl chr14:67,982,630...67,986,888 		JBrowse link
G Icmt isoprenylcysteine carboxyl methyltransferase located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 4:152,381,671...152,391,583
Ensembl chr 4:152,381,684...152,391,578 		JBrowse link
G Mgat2 mannoside acetylglucosaminyltransferase 2 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr12:69,230,932...69,233,547
Ensembl chr12:69,230,931...69,233,544 		JBrowse link
G Rpl10 ribosomal protein L10 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr  X:73,314,463...73,316,741
Ensembl chr  X:73,314,418...73,316,741 		JBrowse link
G Rpl11 ribosomal protein L11 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 4:135,776,665...135,780,704
Ensembl chr 4:135,755,576...135,780,739 		JBrowse link
G Rpl23 ribosomal protein L23 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr11:97,668,352...97,673,265
Ensembl chr11:97,668,353...97,673,263 		JBrowse link
G Rpl27 ribosomal protein L27 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr11:101,333,071...101,336,422
Ensembl chr11:101,333,124...101,336,355 		JBrowse link
G Rpl29 ribosomal protein L29 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 9:106,306,631...106,308,768
Ensembl chr 9:106,306,653...106,308,767 		JBrowse link
G Rpl31 ribosomal protein L31 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 1:39,406,987...39,410,992
Ensembl chr 1:39,406,923...39,410,992 		JBrowse link
G Rpl32 ribosomal protein L32 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 6:115,782,475...115,785,704
Ensembl chr 6:115,782,466...115,785,708 		JBrowse link
G Rpl35 ribosomal protein L35 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 2:38,891,593...38,895,143
Ensembl chr 2:38,891,592...38,895,636 		JBrowse link
G Rpl6 ribosomal protein L6 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 5:121,342,564...121,347,304
Ensembl chr 5:121,342,544...121,347,304 		JBrowse link
G Rps15 ribosomal protein S15 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr10:80,128,265...80,129,948
Ensembl chr10:80,128,287...80,129,948 		JBrowse link
G Rps16 ribosomal protein S16 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 7:28,050,114...28,052,123
Ensembl chr 7:28,050,077...28,052,580 		JBrowse link
G Rps17 ribosomal protein S17 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 7:80,992,481...80,994,982
Ensembl chr 7:80,992,480...80,995,002 		JBrowse link
G Rps18 ribosomal protein S18 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr17:34,170,972...34,174,639
Ensembl chr17:34,170,973...34,174,975 		JBrowse link
G Rps20 ribosomal protein S20 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 4:3,831,334...3,835,600
Ensembl chr 4:3,831,334...3,835,665 		JBrowse link
G Rps21 ribosomal protein S21 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 2:179,899,172...179,900,237
Ensembl chr 2:179,899,170...179,900,238 		JBrowse link
G Rps23 ribosomal protein S23 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr13:91,071,241...91,072,851
Ensembl chr13:91,071,077...91,073,069 		JBrowse link
G Rps26 ribosomal protein S26 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr10:128,460,398...128,462,375
Ensembl chr10:128,460,403...128,462,616 		JBrowse link
G Rps28 ribosomal protein S28 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr17:34,042,010...34,043,536
Ensembl chr17:34,038,001...34,043,536 		JBrowse link
G Rps29 ribosomal protein S29 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr12:69,204,495...69,205,891
Ensembl chr12:69,204,496...69,205,960 		JBrowse link
G Rps3 ribosomal protein S3 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 7:99,127,103...99,132,916
Ensembl chr 7:99,127,103...99,132,945 		JBrowse link
G Rpsa ribosomal protein SA located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 9:119,956,832...119,961,435
Ensembl chr 9:119,956,755...119,961,435 		JBrowse link
G Uba52 ubiquitin A-52 residue ribosomal protein fusion product 1 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 8:70,960,913...70,963,067
Ensembl chr 8:70,960,913...70,963,451 		JBrowse link
rough endoplasmic reticulum lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ache acetylcholinesterase ISO RGD PMID:4413686 RGD:11560526 (All species) (All species) NCBI chr 5:137,286,516...137,292,728
Ensembl chr 5:137,285,781...137,292,728 		JBrowse link
G Edn1 endothelin 1 located_in ISO MGI
RGD		 PMID:10903535 GO_REF:0000096 MGI:4417868 RGD:8662311 NCBI chr13:42,454,952...42,461,466
Ensembl chr13:42,454,952...42,461,466 		JBrowse link
G Lrpap1 low density lipoprotein receptor-related protein associated protein 1 located_in
is_active_in		 ISO
IBA		 MGI
GO_Central
RGD		 PMID:8223699 GO_REF:0000033 GO_REF:0000096 GO_REF:0000119 MGI:4417868 MGI:4834177 RGD:1641935 NCBI chr 5:35,248,834...35,263,043
Ensembl chr 5:35,248,845...35,263,110 		JBrowse link
G Lyz1 lysozyme 1 located_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr10:117,123,700...117,128,773
Ensembl chr10:117,123,702...117,128,773 		JBrowse link
G Lyz2 lysozyme 2 located_in ISO MGI
RGD		 PMID:9208328 GO_REF:0000096 MGI:4417868 RGD:1599861 NCBI chr10:117,113,446...117,118,177
Ensembl chr10:117,113,236...117,118,226 		JBrowse link
G Resp18 regulated endocrine-specific protein 18 located_in ISO MGI
RGD		 PMID:8132649 GO_REF:0000096 MGI:4417868 RGD:69957 NCBI chr 1:75,248,841...75,255,059
Ensembl chr 1:75,248,843...75,255,059 		JBrowse link
G Vtn vitronectin located_in ISO RGD
MGI		 PMID:10192552 GO_REF:0000096 MGI:4417868 RGD:10003091 NCBI chr11:78,389,946...78,393,151
Ensembl chr11:78,389,917...78,393,150 		JBrowse link
rough endoplasmic reticulum membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldob aldolase B, fructose-bisphosphate located_in ISO MGI
RGD		 PMID:234468 GO_REF:0000096 MGI:4417868 RGD:2313431 NCBI chr 4:49,535,993...49,549,546
Ensembl chr 4:49,535,995...49,549,546 		JBrowse link
G Maco1 macoilin 1 located_in
is_active_in		 ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 4:134,530,070...134,581,242
Ensembl chr 4:134,530,070...134,580,656 		JBrowse link
G Rho rhodopsin located_in ISO MGI
RGD		 PMID:2525480 GO_REF:0000096 MGI:4417868 RGD:6893558 NCBI chr 6:115,903,741...115,916,999
Ensembl chr 6:115,908,709...115,916,997 		JBrowse link
G Uba1 ubiquitin-like modifier activating enzyme 1 located_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr  X:20,524,660...20,549,420
Ensembl chr  X:20,524,565...20,549,418 		JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A located_in IDA (MGI:5706859|PMID:26000482) UniProt PMID:26000482 MGI:5706859 NCBI chr 4:125,012,207...125,021,674
Ensembl chr 4:125,012,216...125,021,633 		JBrowse link
Sec61 translocon complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl6ip1 ADP-ribosylation factor-like 6 interacting protein 1 part_of IDA
IBA		 (PMID:10508919) MGI
GO_Central		 PMID:10508919 GO_REF:0000033 NCBI chr 7:117,718,113...117,728,848
Ensembl chr 7:117,718,114...117,728,885 		JBrowse link
G Sec61a1 SEC61 translocon subunit alpha 1 part_of IBA GO_Central GO_REF:0000033 NCBI chr 6:88,480,589...88,495,782
Ensembl chr 6:88,480,561...88,495,887 		JBrowse link
G Sec61a2 SEC61 translocon subunit alpha 2 part_of IBA GO_Central GO_REF:0000033 NCBI chr 2:5,875,788...5,900,199
Ensembl chr 2:5,875,798...5,900,243 		JBrowse link
G Sec61b SEC61 translocon subunit beta part_of IBA GO_Central GO_REF:0000033 NCBI chr 4:47,474,661...47,483,233
Ensembl chr 4:47,474,658...47,483,242 		JBrowse link
G Sec61bl SEC61 translocon subunit beta like part_of IBA GO_Central GO_REF:0000033 NCBI chr13:98,625,867...98,626,349
Ensembl chr13:98,626,041...98,626,350 		JBrowse link
G Ssr4 signal sequence receptor, delta part_of ISO RGD
MGI		 PMID:7916687 GO_REF:0000096 MGI:4417868 RGD:61758 NCBI chr  X:72,830,778...72,834,432
Ensembl chr  X:72,830,634...72,834,436 		JBrowse link
Sec62/Sec63 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sec63 SEC63 homolog, protein translocation regulator part_of IBA GO_Central GO_REF:0000033 NCBI chr10:42,637,492...42,708,510
Ensembl chr10:42,637,492...42,708,510 		JBrowse link
signal recognition particle receptor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rp9 retinitis pigmentosa 9 (human) part_of IDA (MGI:3688359|PMID:15652350) UniProt PMID:15652350 MGI:3688359 NCBI chr 9:22,359,607...22,379,652
Ensembl chr 9:22,322,343...22,381,039 		JBrowse link
G Srpra signal recognition particle receptor alpha part_of
located_in		 EXP
ISO		 (MGI:6869982|PMID:16439358)
(PMID:16439358)		 ComplexPortal
ComplexPortal
MGI		 PMID:16439358 GO_REF:0000119 MGI:4834177 MGI:6869982 NCBI chr 9:35,122,499...35,128,299
Ensembl chr 9:35,111,471...35,159,269 		JBrowse link
G Srprb signal recognition particle receptor, B subunit part_of
located_in		 ISO
EXP
IBA		 (PMID:16439358)
(MGI:6869982|PMID:16439358)		 MGI
ComplexPortal
ComplexPortal
GO_Central		 PMID:16439358 GO_REF:0000033 GO_REF:0000119 MGI:4834177 MGI:6869982 NCBI chr 9:103,065,232...103,079,264
Ensembl chr 9:103,065,231...103,079,336 		JBrowse link
Ssh1 translocon complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sec61g SEC61 translocon subunit gamma part_of IBA GO_Central GO_REF:0000033 NCBI chr11:16,451,638...16,458,484
Ensembl chr11:16,450,530...16,458,484 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 28586
    cellular anatomical entity 19619
      endomembrane system 4383
        endoplasmic reticulum 1941
          rough endoplasmic reticulum 74
            rough endoplasmic reticulum lumen 7
            rough endoplasmic reticulum membrane + 43
Path 2
Term Annotations click to browse term
  cellular_component 28586
    cellular anatomical entity 19619
      intracellular anatomical structure 14780
        intracellular organelle 13156
          intracellular membrane-bounded organelle 12012
            endoplasmic reticulum 1941
              rough endoplasmic reticulum 74
                rough endoplasmic reticulum lumen 7
                rough endoplasmic reticulum membrane + 43
paths to the root