Sec61a1 (Sec61 alpha 1 subunit (S. cerevisiae)) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Sec61a1 (Sec61 alpha 1 subunit (S. cerevisiae)) Mus musculus
Analyze
Symbol: Sec61a1
Name: Sec61 alpha 1 subunit (S. cerevisiae)
RGD ID: 68443
MGI Page MGI
Description: Exhibits ribosome binding activity and transmembrane transporter activity. Involved in pronephric nephron development. Predicted to localize to Sec61 translocon complex. Is expressed in cerebral cortex; jaw; skeleton; and vibrissa. Human ortholog(s) of this gene implicated in familial juvenile hyperuricemic nephropathy. Orthologous to human SEC61A1 (SEC61 translocon subunit alpha 1); PARTICIPATES IN Endoplasmic Reticulum-associated degradation pathway; INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,2',4,4'-Tetrabromodiphenyl ether.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: AA408394; AA410007; protein transport protein Sec61 subunit alpha; protein transport protein Sec61 subunit alpha isoform 1; Sec6; sec61 alpha-1; SEC61, alpha subunit; Sec61a; transport protein sec61 alpha subunit
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39688,480,589 - 88,495,782 (-)NCBIGRCm39mm39
GRCm39 Ensembl688,480,561 - 88,495,887 (-)Ensembl
GRCm38688,503,607 - 88,518,800 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl688,503,579 - 88,518,905 (-)EnsemblGRCm38mm10GRCm38
MGSCv37688,453,601 - 88,468,794 (-)NCBIGRCm37mm9NCBIm37
MGSCv36688,469,248 - 88,484,441 (-)NCBImm8
Celera690,445,389 - 90,460,590 (-)NCBICelera
Cytogenetic Map6D1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2-hydroxypropanoic acid  (ISO)
2-methylcholine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
aconitine  (ISO)
acrylamide  (ISO)
ammonium chloride  (ISO)
antirheumatic drug  (ISO)
Aroclor 1254  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (EXP)
bisphenol A  (ISO)
buspirone  (ISO)
calcium atom  (ISO)
calcium(0)  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
cisplatin  (ISO)
clobetasol  (EXP)
clofibrate  (EXP)
clofibric acid  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (EXP,ISO)
cyproconazole  (EXP)
dibutyl phthalate  (EXP,ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
fipronil  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
genistein  (ISO)
gentamycin  (ISO)
glafenine  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
nimesulide  (ISO)
paracetamol  (EXP,ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
pregnenolone 16alpha-carbonitrile  (ISO)
propiconazole  (EXP)
rac-lactic acid  (ISO)
SB 431542  (ISO)
sunitinib  (ISO)
tamoxifen  (EXP)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (ISO)
titanium dioxide  (EXP)
triadimefon  (EXP)
troglitazone  (EXP)
tunicamycin  (ISO)
valproic acid  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12065409   PMID:12477932   PMID:12520002   PMID:14508489   PMID:14508490   PMID:15489334   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:16705175   PMID:17110338   PMID:18799693   PMID:19521500   PMID:19934005   PMID:20541250   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22375059  
PMID:22796945   PMID:24218449   PMID:24457600   PMID:24927728   PMID:26147683   PMID:26634806   PMID:27392076   PMID:28378742   PMID:28679634   PMID:29795235   PMID:29915147   PMID:30409884  
PMID:30457570   PMID:30550785   PMID:31877066   PMID:32325033  


Genomics

Comparative Map Data
Sec61a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39688,480,589 - 88,495,782 (-)NCBIGRCm39mm39
GRCm39 Ensembl688,480,561 - 88,495,887 (-)Ensembl
GRCm38688,503,607 - 88,518,800 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl688,503,579 - 88,518,905 (-)EnsemblGRCm38mm10GRCm38
MGSCv37688,453,601 - 88,468,794 (-)NCBIGRCm37mm9NCBIm37
MGSCv36688,469,248 - 88,484,441 (-)NCBImm8
Celera690,445,389 - 90,460,590 (-)NCBICelera
Cytogenetic Map6D1NCBI
SEC61A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3128,051,641 - 128,071,683 (+)EnsemblGRCh38hg38GRCh38
GRCh383128,052,437 - 128,071,683 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh373127,771,280 - 127,790,526 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363129,253,902 - 129,273,216 (+)NCBINCBI36hg18NCBI36
Build 343129,253,909 - 129,273,223NCBI
Celera3126,201,130 - 126,220,443 (+)NCBI
Cytogenetic Map3q21.3NCBI
HuRef3125,151,693 - 125,170,962 (+)NCBIHuRef
CHM1_13127,734,421 - 127,753,735 (+)NCBICHM1_1
Sec61a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24120,973,519 - 120,987,871 (-)NCBI
Rnor_6.0 Ensembl4120,453,581 - 120,467,932 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04120,453,577 - 120,467,932 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04185,693,504 - 185,707,859 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44122,597,889 - 122,612,245 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14122,842,369 - 122,856,726 (-)NCBI
Celera4109,929,352 - 109,943,708 (-)NCBICelera
Cytogenetic Map4q34NCBI
Sec61a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542915,637,325 - 15,652,556 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542915,637,461 - 15,652,556 (-)NCBIChiLan1.0ChiLan1.0
SEC61A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13132,457,658 - 132,476,935 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3132,457,005 - 132,476,935 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03125,091,916 - 125,111,238 (+)NCBIMhudiblu_PPA_v0panPan3
SEC61A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1202,070,739 - 2,087,790 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl202,070,248 - 2,087,789 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha202,106,985 - 2,124,750 (+)NCBI
ROS_Cfam_1.0202,091,105 - 2,109,038 (+)NCBI
UMICH_Zoey_3.1201,812,164 - 1,829,894 (+)NCBI
UNSW_CanFamBas_1.0202,138,938 - 2,156,767 (+)NCBI
UU_Cfam_GSD_1.0202,099,082 - 2,117,009 (+)NCBI
Sec61a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494220,536,221 - 20,546,520 (-)NCBI
SpeTri2.0NW_004936798578,090 - 587,010 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEC61A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1372,254,464 - 72,365,493 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11372,254,462 - 72,276,484 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21379,737,470 - 79,751,229 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SEC61A1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12252,977,101 - 52,994,766 (-)NCBI
ChlSab1.1 Ensembl2252,976,872 - 52,992,039 (-)Ensembl
Sec61a1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624961466,234 - 477,880 (-)NCBI

Position Markers
RH124708  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38688,503,646 - 88,504,009UniSTSGRCm38
MGSCv37688,453,640 - 88,454,003UniSTSGRCm37
Celera690,445,428 - 90,445,791UniSTS
Cytogenetic Map6D1UniSTS
RH125916  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38688,503,612 - 88,503,861UniSTSGRCm38
MGSCv37688,453,606 - 88,453,855UniSTSGRCm37
Celera690,445,394 - 90,445,643UniSTS
Cytogenetic Map6D1UniSTS
Whitehead/MRC_RH6913.68UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
14697704Stsl4_mSalmonella typhimurium susceptibility locus 4 (mouse)67710000090000000Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1811
Count of miRNA genes:683
Interacting mature miRNAs:859
Transcripts:ENSMUST00000032168, ENSMUST00000125016, ENSMUST00000130807, ENSMUST00000130918, ENSMUST00000136103, ENSMUST00000139551, ENSMUST00000139676, ENSMUST00000145421, ENSMUST00000155079
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_016906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB032902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC154038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF145253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF222743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK007696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK054318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000032168   ⟹   ENSMUSP00000032168
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl688,503,579 - 88,518,905 (-)Ensembl
RefSeq Acc Id: ENSMUST00000125016
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl688,515,384 - 88,518,903 (-)Ensembl
RefSeq Acc Id: ENSMUST00000130807
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl688,514,207 - 88,515,980 (-)Ensembl
RefSeq Acc Id: ENSMUST00000130918
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl688,513,811 - 88,518,773 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136103
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl688,504,801 - 88,506,371 (-)Ensembl
RefSeq Acc Id: ENSMUST00000139551
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl688,515,364 - 88,518,791 (-)Ensembl
RefSeq Acc Id: ENSMUST00000139676
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl688,515,326 - 88,518,828 (-)Ensembl
RefSeq Acc Id: ENSMUST00000145421
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl688,506,329 - 88,513,901 (-)Ensembl
RefSeq Acc Id: ENSMUST00000155079
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl688,518,178 - 88,518,793 (-)Ensembl
RefSeq Acc Id: ENSMUST00000203200
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl688,506,173 - 88,512,405 (-)Ensembl
RefSeq Acc Id: ENSMUST00000203943
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl688,508,679 - 88,512,723 (-)Ensembl
RefSeq Acc Id: ENSMUST00000204502
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl688,512,039 - 88,512,795 (-)Ensembl
RefSeq Acc Id: NM_016906   ⟹   NP_058602
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39688,480,589 - 88,495,782 (-)NCBI
GRCm38688,503,607 - 88,518,800 (-)ENTREZGENE
MGSCv37688,453,601 - 88,468,794 (-)RGD
Celera690,445,389 - 90,460,590 (-)RGD
cM Map6 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_058602   ⟸   NM_016906
- Peptide Label: isoform 1
- UniProtKB: P61620 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000032168   ⟸   ENSMUST00000032168
Protein Domains
Plug_translocon

Promoters
RGD ID:6839968
Promoter ID:MM_KWN:46820
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   Lung,   Spleen
Transcripts:OTTMUST00000055769
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36688,456,001 - 88,457,287 (-)MPROMDB
RGD ID:6839967
Promoter ID:MM_KWN:46821
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Kidney,   Liver,   MEF_B6
Transcripts:OTTMUST00000055762
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36688,462,601 - 88,464,202 (-)MPROMDB
RGD ID:6839965
Promoter ID:MM_KWN:46822
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   MEF_B6
Transcripts:OTTMUST00000055768
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36688,465,459 - 88,465,959 (-)MPROMDB
RGD ID:6839966
Promoter ID:MM_KWN:46823
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000055761,   OTTMUST00000055763,   OTTMUST00000055764,   OTTMUST00000055765,   OTTMUST00000055766,   OTTMUST00000055767
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36688,468,636 - 88,469,642 (-)MPROMDB
RGD ID:6890374
Promoter ID:EPDNEW_M8638
Type:initiation region
Name:Sec61a1_1
Description:Mus musculus Sec61 alpha 1 subunit , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38688,518,802 - 88,518,862EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1858417 AgrOrtholog
Ensembl Genes ENSMUSG00000030082 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000032168 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000032168 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.3370.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro SecY/SEC61-alpha UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SecY_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SecY_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Translocon_Sec61/SecY_plug_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:53421 UniProtKB/Swiss-Prot
MGD MGI:1858417 ENTREZGENE
NCBI Gene 53421 ENTREZGENE
PANTHER PTHR10906 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Plug_translocon UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SecY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sec61a1 PhenoGen
PIRSF SecY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE SECY_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SECY_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF103491 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs 3a0501s007 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt P61620 ENTREZGENE
  Q3TJD0_MOUSE UniProtKB/TrEMBL
  Q3V477_MOUSE UniProtKB/TrEMBL
  S61A1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary P38378 UniProtKB/Swiss-Prot
  P57726 UniProtKB/Swiss-Prot
  Q3TXA5 UniProtKB/Swiss-Prot