Rangrf (RAN guanine nucleotide release factor) - Rat Genome Database
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Gene: Rangrf (RAN guanine nucleotide release factor) Mus musculus
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Symbol: Rangrf
Name: RAN guanine nucleotide release factor
RGD ID: 1557008
MGI Page MGI
Description: Is expressed in central nervous system; retina; retina ganglion cell layer; retina inner nuclear layer; and retina outer nuclear layer. Orthologous to human RANGRF (RAN guanine nucleotide release factor); INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2400006H24Rik; MGC107268; Mog; Mog1; Ra; ran-binding protein MOG1; Rangnrf; RP23-396M19.8
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm10355   Gm15711   Gm18753   Gm4535   Gm7791   Gm8572  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391168,863,310 - 68,866,011 (-)NCBIGRCm39mm39
GRCm39 Ensembl1168,863,310 - 68,866,011 (-)Ensembl
GRCm381168,972,484 - 68,975,185 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1168,972,484 - 68,975,185 (-)EnsemblGRCm38mm10GRCm38
MGSCv371168,785,989 - 68,787,322 (-)NCBIGRCm37mm9NCBIm37
MGSCv361168,788,682 - 68,790,015 (-)NCBImm8
Celera1175,915,300 - 75,916,633 (-)NCBICelera
Cytogenetic Map11B3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Additional References at PubMed
PMID:10349636   PMID:10811801   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12819125   PMID:15226823   PMID:15716349   PMID:16141072   PMID:16141073   PMID:16778019  
PMID:18184654   PMID:18799693   PMID:23420830   PMID:32325033  


Genomics

Comparative Map Data
Rangrf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391168,863,310 - 68,866,011 (-)NCBIGRCm39mm39
GRCm39 Ensembl1168,863,310 - 68,866,011 (-)Ensembl
GRCm381168,972,484 - 68,975,185 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1168,972,484 - 68,975,185 (-)EnsemblGRCm38mm10GRCm38
MGSCv371168,785,989 - 68,787,322 (-)NCBIGRCm37mm9NCBIm37
MGSCv361168,788,682 - 68,790,015 (-)NCBImm8
Celera1175,915,300 - 75,916,633 (-)NCBICelera
Cytogenetic Map11B3NCBI
RANGRF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl178,288,654 - 8,290,092 (+)EnsemblGRCh38hg38GRCh38
GRCh38178,288,670 - 8,290,087 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37178,191,988 - 8,193,405 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36178,132,714 - 8,134,130 (+)NCBINCBI36hg18NCBI36
Celera178,220,823 - 8,222,263 (+)NCBI
Cytogenetic Map17p13.1NCBI
HuRef178,087,401 - 8,088,841 (+)NCBIHuRef
CHM1_1178,200,890 - 8,202,330 (+)NCBICHM1_1
Rangrf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21053,677,467 - 53,678,880 (-)NCBI
Rnor_6.0 Ensembl1055,559,041 - 55,560,422 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01055,559,049 - 55,560,420 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01055,301,089 - 55,302,460 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41055,731,343 - 55,732,714 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1052,843,782 - 52,845,153 (-)NCBICelera
Cytogenetic Map10q24NCBI
Rangrf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554678,622,843 - 8,624,401 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554678,622,843 - 8,624,401 (-)NCBIChiLan1.0ChiLan1.0
RANGRF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11748,101,744 - 48,103,394 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1748,101,744 - 48,103,394 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01743,369,556 - 43,371,025 (-)NCBIMhudiblu_PPA_v0panPan3
RANGRF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl533,084,397 - 33,085,812 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1533,084,355 - 33,085,810 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Rangrf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365951,513,855 - 1,515,300 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RANGRF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1253,485,280 - 53,525,756 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11253,484,584 - 53,486,716 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21255,960,779 - 55,962,215 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RANGRF
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1167,654,235 - 7,655,851 (+)NCBI
ChlSab1.1 Ensembl167,654,439 - 7,655,703 (+)Ensembl
Rangrf
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478610,866,724 - 10,868,136 (+)NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11330000072800000Mouse
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111231863769794121Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113568778969794161Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113661246070618665Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113672273870723028Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113719011571190238Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113812528972125383Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114236579176365904Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114236579176365904Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5539415972319101Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115859972974863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
11532697Sluc36_msusceptibility to lung cancer 36 (mouse)115936579169591873Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116718736579923086Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1197
Count of miRNA genes:230
Interacting mature miRNAs:272
Transcripts:ENSMUST00000038644, ENSMUST00000132093, ENSMUST00000133099, ENSMUST00000138362, ENSMUST00000143444, ENSMUST00000144271, ENSMUST00000150017, ENSMUST00000156178
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000038644   ⟹   ENSMUSP00000038485
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1168,972,484 - 68,973,843 (-)Ensembl
RefSeq Acc Id: ENSMUST00000132093
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1168,972,484 - 68,973,789 (-)Ensembl
RefSeq Acc Id: ENSMUST00000133099
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1168,972,498 - 68,973,196 (-)Ensembl
RefSeq Acc Id: ENSMUST00000138362
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1168,972,484 - 68,973,012 (-)Ensembl
RefSeq Acc Id: ENSMUST00000143444
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1168,972,487 - 68,973,343 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144271
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1168,972,488 - 68,973,445 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150017
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1168,972,484 - 68,975,185 (-)Ensembl
RefSeq Acc Id: ENSMUST00000156178
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1168,972,495 - 68,973,368 (-)Ensembl
RefSeq Acc Id: NM_001285441   ⟹   NP_001272370
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391168,863,310 - 68,866,011 (-)NCBI
GRCm381168,972,484 - 68,975,185 (-)NCBI
Celera1175,915,297 - 75,917,998 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001285442   ⟹   NP_001272371
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391168,863,310 - 68,864,681 (-)NCBI
GRCm381168,972,484 - 68,973,855 (-)NCBI
Celera1175,915,297 - 75,917,998 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001285443   ⟹   NP_001272372
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391168,863,310 - 68,864,681 (-)NCBI
GRCm381168,972,484 - 68,973,855 (-)NCBI
Celera1175,915,297 - 75,917,998 (-)NCBI
Sequence:
RefSeq Acc Id: NM_021329   ⟹   NP_067304
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391168,863,310 - 68,864,681 (-)NCBI
GRCm381168,972,484 - 68,973,855 (-)NCBI
MGSCv371168,785,989 - 68,787,322 (-)RGD
Celera1175,915,297 - 75,917,998 (-)NCBI
cM Map11 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_067304   ⟸   NM_021329
- Peptide Label: isoform 2
- UniProtKB: Q9JIB0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001272370   ⟸   NM_001285441
- Peptide Label: isoform 1
- UniProtKB: Q9JIB0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001272371   ⟸   NM_001285442
- Peptide Label: isoform 3
- Sequence:
RefSeq Acc Id: NP_001272372   ⟸   NM_001285443
- Peptide Label: isoform 4
- UniProtKB: Q9JIB0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000038485   ⟸   ENSMUST00000038644

Promoters
RGD ID:6820958
Promoter ID:MM_KWN:8010
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell,   Kidney,   Lung
Transcripts:OTTMUST00000013268,   OTTMUST00000013269,   OTTMUST00000013270,   OTTMUST00000013271,   OTTMUST00000013272,   OTTMUST00000013273,   OTTMUST00000013274,   XM_001480603_2_GM10355
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361168,787,036 - 68,787,536 (-)MPROMDB
RGD ID:8675130
Promoter ID:EPDNEW_M15596
Type:multiple initiation site
Name:Rangrf_1
Description:Mus musculus RAN guanine nucleotide release factor , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381168,973,854 - 68,973,914EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1889073 AgrOrtholog
Ensembl Genes ENSMUSG00000032892 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000038485 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000038644 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000150017 ENTREZGENE
Gene3D-CATH 3.40.1000.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Mog1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Mog1/PsbP_a/b/a-sand UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:57785 UniProtKB/Swiss-Prot
MGD MGI:1889073 ENTREZGENE
NCBI Gene 57785 ENTREZGENE
PANTHER PTHR15837 UniProtKB/Swiss-Prot
Pfam Mog1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rangrf PhenoGen
Superfamily-SCOP SSF55724 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt MOG1_MOUSE UniProtKB/Swiss-Prot
  Q05D49_MOUSE UniProtKB/TrEMBL
  Q9JIB0 ENTREZGENE
UniProt Secondary Q9CWZ0 UniProtKB/Swiss-Prot