Rpsa (ribosomal protein SA) - Rat Genome Database
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Gene: Rpsa (ribosomal protein SA) Mus musculus
Analyze
Symbol: Rpsa
Name: ribosomal protein SA
RGD ID: 1615177
MGI Page MGI
Description: Exhibits laminin binding activity. Predicted to be involved in cell-cell adhesion; cytoplasmic translation; and ribosomal small subunit assembly. Localizes to several cellular components, including glutamatergic synapse; nucleus; and small ribosomal subunit. Is expressed in several structures, including alimentary system; central nervous system; eye; genitourinary system; and hemolymphoid system gland. Used to study Diamond-Blackfan anemia and arrhythmogenic right ventricular dysplasia 5. Orthologous to human RPSA (ribosomal protein SA); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 37 kDa laminin receptor; 37 kDa oncofetal antigen; 37/67 kDa laminin receptor; 37LRP; 40S ribosomal protein SA; 67 kDa laminin receptor; 67kDa; 67lr; AL022858; L; La; laminin receptor 1 (67kD, ribosomal protein SA); laminin-binding protein precursor p40; Lamr; Lamr1; Lamrl1; LBP/p40; LRP/LR; MGC117921; MGC118614; MLR; OFA/iLRP; P40; P40-; P40-3; P40-3, functional; P40-8; P40-8, functional
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm11824   Gm11909   Gm12518   Gm13367   Gm13426   Gm14571   Gm17040   Gm17956   Gm17981   Gm17985   Gm17997   Gm18017   Gm18040   Gm18042   Gm18078   Gm18081   Gm18083   Gm18085   Gm18086   Gm18095   Gm5240   Gm5764   Gm5968   Gm6426   Gm7516   Gm7722   Gm7804   Gm8118   Gm9095   Gm9097   Gm9368   Lamr1-ps1   Rpsa-ps1   Rpsa-ps10   Rpsa-ps11   Rpsa-ps12   Rpsa-ps2   Rpsa-ps3   Rpsa-ps4   Rpsa-ps5   Rpsa-ps6   Rpsa-ps7   Rpsa-ps8   Rpsa-ps9  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399119,956,832 - 119,961,435 (+)NCBIGRCm39mm39
GRCm389120,127,766 - 120,132,369 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9120,127,689 - 120,132,369 (+)EnsemblGRCm38mm10GRCm38
MGSCv379120,036,884 - 120,041,487 (+)NCBIGRCm37mm9NCBIm37
MGSCv369119,976,486 - 119,981,067 (+)NCBImm8
Celera9120,596,577 - 120,601,180 (+)NCBICelera
Cytogenetic Map9F4NCBI
cM Map971.41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(Z)-3-butylidenephthalide  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4,6-trinitrotoluene  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP,ISO)
2-nitrofluorene  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-chloropropane-1,2-diol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-azacytidine  (ISO)
6-propyl-2-thiouracil  (ISO)
7,12-dimethyltetraphene  (ISO)
aflatoxin B1  (EXP,ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
antirheumatic drug  (ISO)
Aroclor 1254  (EXP)
arsenous acid  (ISO)
bexarotene  (ISO)
bisphenol A  (ISO)
Brodifacoum  (ISO)
bucladesine  (ISO)
bufalin  (ISO)
C60 fullerene  (ISO)
carbon nanotube  (EXP)
chlorohydrocarbon  (ISO)
chloropicrin  (ISO)
choline  (EXP)
chromium(6+)  (EXP)
cisplatin  (ISO)
clofibrate  (EXP)
clofibric acid  (ISO)
cocaine  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
crocidolite asbestos  (ISO)
CU-O LINKAGE  (ISO)
cypermethrin  (ISO)
D-glucose  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
dopamine  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP,ISO)
fipronil  (ISO)
flutamide  (ISO)
folic acid  (EXP)
furan  (ISO)
gentamycin  (ISO)
glafenine  (ISO)
glucose  (ISO)
indometacin  (ISO)
L-ascorbic acid  (EXP)
L-methionine  (EXP)
lovastatin  (EXP)
medroxyprogesterone acetate  (ISO)
methapyrilene  (ISO)
methoxyacetic acid  (EXP)
methylseleninic acid  (EXP)
microcystin  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
N-nitrosodiethylamine  (ISO)
N-nitrosodimethylamine  (ISO)
naphthalene  (EXP)
nefazodone  (ISO)
nimesulide  (ISO)
paracetamol  (EXP,ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
phenytoin  (ISO)
PhIP  (ISO)
piperonyl butoxide  (ISO)
pirinixic acid  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
pyrogallol  (EXP)
quercetin  (ISO)
silicon dioxide  (ISO)
sodium fluoride  (EXP)
sulforaphane  (ISO)
T-2 toxin  (ISO)
tetrachloromethane  (ISO)
trimellitic anhydride  (EXP)
tungsten  (EXP)
valproic acid  (EXP)
vinclozolin  (ISO)
vorinostat  (ISO)
warfarin  (EXP)
zinc atom  (EXP)
zinc(0)  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:1353694   PMID:1825600   PMID:1834645   PMID:2144817   PMID:2146686   PMID:2531008   PMID:3357791   PMID:7671812   PMID:7868905   PMID:7895274   PMID:8452943   PMID:8463322  
PMID:8573717   PMID:8631027   PMID:8985115   PMID:9063750   PMID:9588904   PMID:9811942   PMID:10349636   PMID:10844592   PMID:10922068   PMID:11042159   PMID:11044609   PMID:11076861  
PMID:11217851   PMID:11322760   PMID:12466851   PMID:12477932   PMID:12904583   PMID:14610273   PMID:14730304   PMID:15226823   PMID:15246873   PMID:15782199   PMID:15922307   PMID:16141072  
PMID:16141073   PMID:16516231   PMID:16602821   PMID:16788104   PMID:16973587   PMID:17688421   PMID:18056256   PMID:18079119   PMID:18211825   PMID:18287559   PMID:18339329   PMID:18495661  
PMID:18799693   PMID:19176763   PMID:19436113   PMID:19712679   PMID:19865483   PMID:20511545   PMID:20556404   PMID:21320497   PMID:21565611   PMID:21873635   PMID:22354994   PMID:22640394  
PMID:23579497   PMID:23666531   PMID:24457600   PMID:24840404   PMID:25082063   PMID:25820239   PMID:28154178   PMID:28378742   PMID:30196744   PMID:30333137   PMID:30457570   PMID:30595499  
PMID:30713523   PMID:32325033  


Genomics

Comparative Map Data
Rpsa
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399119,956,832 - 119,961,435 (+)NCBIGRCm39mm39
GRCm389120,127,766 - 120,132,369 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9120,127,689 - 120,132,369 (+)EnsemblGRCm38mm10GRCm38
MGSCv379120,036,884 - 120,041,487 (+)NCBIGRCm37mm9NCBIm37
MGSCv369119,976,486 - 119,981,067 (+)NCBImm8
Celera9120,596,577 - 120,601,180 (+)NCBICelera
Cytogenetic Map9F4NCBI
cM Map971.41NCBI
RPSA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl339,406,716 - 39,412,542 (+)EnsemblGRCh38hg38GRCh38
GRCh38339,406,720 - 39,412,542 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37339,448,204 - 39,454,033 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36339,422,917 - 39,429,037 (+)NCBINCBI36hg18NCBI36
Build 34339,423,189 - 39,429,034NCBI
Celera339,389,788 - 39,395,643 (+)NCBI
Cytogenetic Map3p22.1NCBI
HuRef339,491,541 - 39,497,373 (+)NCBIHuRef
CHM1_1339,399,293 - 39,405,084 (+)NCBICHM1_1
Rpsa
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08128,806,053 - 128,809,987 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8128,806,129 - 128,809,986 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08128,006,814 - 128,010,671 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48125,100,239 - 125,104,096 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18125,119,975 - 125,123,833 (+)NCBI
Celera8118,996,237 - 119,000,094 (+)NCBICelera
Cytogenetic Map8q32NCBI
Rpsa
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542029,978,160 - 29,983,544 (-)NCBIChiLan1.0ChiLan1.0
RPSA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1339,591,012 - 39,596,745 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl339,591,012 - 39,596,748 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0339,311,321 - 39,317,083 (+)NCBIMhudiblu_PPA_v0panPan3
RPSA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl239,070,953 - 9,077,057 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1239,070,953 - 9,077,058 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Rpsa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647328,624,110 - 28,628,488 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPSA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1324,072,527 - 24,083,686 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11324,072,551 - 24,081,536 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21326,315,726 - 26,319,088 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.21326,391,337 - 26,393,313 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPSA
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11523,915 - 29,889 (-)NCBI
Rpsa
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473078,808,270 - 78,813,782 (-)NCBI

Position Markers
MGI:1206392  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2H3UniSTS
Cytogenetic Map9F4UniSTS
cM Map293.0UniSTS
Lamr1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9F4UniSTS
cM Map971.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:296
Count of miRNA genes:229
Interacting mature miRNAs:248
Transcripts:ENSMUST00000035105
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_011029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC110091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF140348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ279835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV586849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC037195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC055886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC081461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC084677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC092041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC094902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC099601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC110285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ360291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ360292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU554633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  J02870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X06406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000035105   ⟹   ENSMUSP00000035105
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9120,127,689 - 120,132,369 (+)Ensembl
RefSeq Acc Id: ENSMUST00000215568
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9120,128,806 - 120,130,374 (+)Ensembl
RefSeq Acc Id: ENSMUST00000216813
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9120,127,802 - 120,128,888 (+)Ensembl
RefSeq Acc Id: ENSMUST00000217317   ⟹   ENSMUSP00000148933
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9120,127,844 - 120,131,559 (+)Ensembl
RefSeq Acc Id: ENSMUST00000217352   ⟹   ENSMUSP00000149650
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9120,130,118 - 120,131,012 (+)Ensembl
RefSeq Acc Id: ENSMUST00000217356   ⟹   ENSMUSP00000150804
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9120,127,789 - 120,131,559 (+)Ensembl
RefSeq Acc Id: NM_011029   ⟹   NP_035159
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399119,956,832 - 119,961,435 (+)NCBI
GRCm389120,127,766 - 120,132,369 (+)ENTREZGENE
MGSCv379120,036,884 - 120,041,487 (+)RGD
Celera9120,596,577 - 120,601,180 (+)RGD
cM Map9 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_035159 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA39413 (Get FASTA)   NCBI Sequence Viewer  
  AAD26866 (Get FASTA)   NCBI Sequence Viewer  
  AAH03829 (Get FASTA)   NCBI Sequence Viewer  
  AAH37195 (Get FASTA)   NCBI Sequence Viewer  
  AAH55886 (Get FASTA)   NCBI Sequence Viewer  
  AAH81461 (Get FASTA)   NCBI Sequence Viewer  
  AAH84677 (Get FASTA)   NCBI Sequence Viewer  
  AAH92041 (Get FASTA)   NCBI Sequence Viewer  
  AAH94902 (Get FASTA)   NCBI Sequence Viewer  
  AAH99601 (Get FASTA)   NCBI Sequence Viewer  
  AAI10286 (Get FASTA)   NCBI Sequence Viewer  
  ABC95972 (Get FASTA)   NCBI Sequence Viewer  
  ABC95977 (Get FASTA)   NCBI Sequence Viewer  
  ACB59248 (Get FASTA)   NCBI Sequence Viewer  
  BAB26926 (Get FASTA)   NCBI Sequence Viewer  
  BAB27306 (Get FASTA)   NCBI Sequence Viewer  
  BAB27353 (Get FASTA)   NCBI Sequence Viewer  
  BAB27355 (Get FASTA)   NCBI Sequence Viewer  
  BAC35952 (Get FASTA)   NCBI Sequence Viewer  
  BAC35960 (Get FASTA)   NCBI Sequence Viewer  
  BAC38701 (Get FASTA)   NCBI Sequence Viewer  
  BAC40671 (Get FASTA)   NCBI Sequence Viewer  
  BAE22057 (Get FASTA)   NCBI Sequence Viewer  
  BAE22550 (Get FASTA)   NCBI Sequence Viewer  
  BAE35867 (Get FASTA)   NCBI Sequence Viewer  
  BAE35924 (Get FASTA)   NCBI Sequence Viewer  
  BAE38083 (Get FASTA)   NCBI Sequence Viewer  
  BAE38953 (Get FASTA)   NCBI Sequence Viewer  
  BAE39085 (Get FASTA)   NCBI Sequence Viewer  
  BAE39278 (Get FASTA)   NCBI Sequence Viewer  
  CAA29696 (Get FASTA)   NCBI Sequence Viewer  
  EDL09182 (Get FASTA)   NCBI Sequence Viewer  
  P14206 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_035159   ⟸   NM_011029
- UniProtKB: P14206 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000149650   ⟸   ENSMUST00000217352
RefSeq Acc Id: ENSMUSP00000150804   ⟸   ENSMUST00000217356
RefSeq Acc Id: ENSMUSP00000148933   ⟸   ENSMUST00000217317
RefSeq Acc Id: ENSMUSP00000035105   ⟸   ENSMUST00000035105
Protein Domains
40S_SA_C

Promoters
RGD ID:6844485
Promoter ID:MM_KWN:59162
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000083107,   NM_011029,   UC009SCE.1,   UC009SCF.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369120,036,386 - 120,037,447 (+)MPROMDB
RGD ID:6845188
Promoter ID:MM_KWN:59164
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NR_002902,   UC009SCH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369120,038,686 - 120,040,157 (+)MPROMDB
RGD ID:8671222
Promoter ID:EPDNEW_M13642
Type:multiple initiation site
Name:Rpsa_1
Description:Mus musculus ribosomal protein SA , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389120,127,788 - 120,127,848EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:105381 AgrOrtholog
Ensembl Genes ENSMUSG00000032518 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000035105 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000148933 UniProtKB/Swiss-Prot
  ENSMUSP00000149650 UniProtKB/TrEMBL
  ENSMUSP00000150804 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000035105 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000217317 UniProtKB/Swiss-Prot
  ENSMUST00000217352 UniProtKB/TrEMBL
  ENSMUST00000217356 UniProtKB/TrEMBL
InterPro 40S_ribosomal_SA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  40S_SA_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S2_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S2_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S2_euk/arc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S2_flav_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:16785 UniProtKB/Swiss-Prot
MGD MGI:105381 ENTREZGENE
NCBI Gene 16785 ENTREZGENE
PANTHER PTHR11489 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 40S_SA_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rpsa PhenoGen
PRINTS RIBOSOMALS2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE RIBOSOMAL_S2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RIBOSOMAL_S2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52313 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs uS2_euk_arch UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.311972 ENTREZGENE
  Mm.391708 ENTREZGENE
  Mm.4071 ENTREZGENE
UniProt A0A1L1SRW0_MOUSE UniProtKB/TrEMBL
  A0A1L1SUK3_MOUSE UniProtKB/TrEMBL
  B2CY77_MOUSE UniProtKB/TrEMBL
  P14206 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q58E74 UniProtKB/Swiss-Prot
  Q8BHL0 UniProtKB/Swiss-Prot
  Q8BNL2 UniProtKB/Swiss-Prot
  Q91V31 UniProtKB/Swiss-Prot
  Q9CY13 UniProtKB/Swiss-Prot