Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:rough endoplasmic reticulum membrane
go back to main search page
Accession:GO:0030867 term browser browse the term
Definition:The lipid bilayer surrounding the rough endoplasmic reticulum.
Synonyms:exact_synonym: RER membrane;   rough ER membrane
 xref: NIF_Subcellular:sao3089754107


show annotations for term's descendants           Sort by:
rough endoplasmic reticulum membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldob aldolase B, fructose-bisphosphate located_in ISO MGI
RGD		 PMID:234468 GO_REF:0000096 MGI:4417868 RGD:2313431 NCBI chr 4:49,535,993...49,549,546
Ensembl chr 4:49,535,995...49,549,546 		JBrowse link
G Maco1 macoilin 1 located_in
is_active_in		 ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 4:134,530,070...134,581,242
Ensembl chr 4:134,530,070...134,580,656 		JBrowse link
G Rho rhodopsin located_in ISO MGI
RGD		 PMID:2525480 GO_REF:0000096 MGI:4417868 RGD:6893558 NCBI chr 6:115,903,741...115,916,999
Ensembl chr 6:115,908,709...115,916,997 		JBrowse link
G Uba1 ubiquitin-like modifier activating enzyme 1 located_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr  X:20,524,660...20,549,420
Ensembl chr  X:20,524,565...20,549,418 		JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A located_in IDA (MGI:5706859|PMID:26000482) UniProt PMID:26000482 MGI:5706859 NCBI chr 4:125,012,207...125,021,674
Ensembl chr 4:125,012,216...125,021,633 		JBrowse link
cytoplasmic side of rough endoplasmic reticulum membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alg5 ALG5 dolichyl-phosphate beta-glucosyltransferase is_active_in ISO (PMID:10359825) UniProt PMID:10359825 NCBI chr 3:54,642,960...54,657,216
Ensembl chr 3:54,642,960...54,658,739 		JBrowse link
G Epm2a epilepsy, progressive myoclonic epilepsy, type 2 gene alpha located_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:11,218,435...11,335,408
Ensembl chr10:11,219,148...11,335,388 		JBrowse link
G Gnrh1 gonadotropin releasing hormone 1 located_in ISO gonadotropin-releasing hormone-associated peptide MGI
RGD		 PMID:2183089 GO_REF:0000096 MGI:4417868 RGD:9685146 NCBI chr14:67,982,717...67,986,889
Ensembl chr14:67,982,630...67,986,888 		JBrowse link
G Icmt isoprenylcysteine carboxyl methyltransferase located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 4:152,381,671...152,391,583
Ensembl chr 4:152,381,684...152,391,578 		JBrowse link
G Mgat2 mannoside acetylglucosaminyltransferase 2 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr12:69,230,932...69,233,547
Ensembl chr12:69,230,931...69,233,544 		JBrowse link
G Rpl10 ribosomal protein L10 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr  X:73,314,463...73,316,741
Ensembl chr  X:73,314,418...73,316,741 		JBrowse link
G Rpl11 ribosomal protein L11 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 4:135,776,665...135,780,704
Ensembl chr 4:135,755,576...135,780,739 		JBrowse link
G Rpl23 ribosomal protein L23 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr11:97,668,352...97,673,265
Ensembl chr11:97,668,353...97,673,263 		JBrowse link
G Rpl27 ribosomal protein L27 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr11:101,333,071...101,336,422
Ensembl chr11:101,333,124...101,336,355 		JBrowse link
G Rpl29 ribosomal protein L29 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 9:106,306,631...106,308,768
Ensembl chr 9:106,306,653...106,308,767 		JBrowse link
G Rpl31 ribosomal protein L31 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 1:39,406,987...39,410,992
Ensembl chr 1:39,406,923...39,410,992 		JBrowse link
G Rpl32 ribosomal protein L32 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 6:115,782,475...115,785,704
Ensembl chr 6:115,782,466...115,785,708 		JBrowse link
G Rpl35 ribosomal protein L35 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 2:38,891,593...38,895,143
Ensembl chr 2:38,891,592...38,895,636 		JBrowse link
G Rpl6 ribosomal protein L6 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 5:121,342,564...121,347,304
Ensembl chr 5:121,342,544...121,347,304 		JBrowse link
G Rps15 ribosomal protein S15 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr10:80,128,265...80,129,948
Ensembl chr10:80,128,287...80,129,948 		JBrowse link
G Rps16 ribosomal protein S16 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 7:28,050,114...28,052,123
Ensembl chr 7:28,050,077...28,052,580 		JBrowse link
G Rps17 ribosomal protein S17 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 7:80,992,481...80,994,982
Ensembl chr 7:80,992,480...80,995,002 		JBrowse link
G Rps18 ribosomal protein S18 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr17:34,170,972...34,174,639
Ensembl chr17:34,170,973...34,174,975 		JBrowse link
G Rps20 ribosomal protein S20 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 4:3,831,334...3,835,600
Ensembl chr 4:3,831,334...3,835,665 		JBrowse link
G Rps21 ribosomal protein S21 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 2:179,899,172...179,900,237
Ensembl chr 2:179,899,170...179,900,238 		JBrowse link
G Rps23 ribosomal protein S23 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr13:91,071,241...91,072,851
Ensembl chr13:91,071,077...91,073,069 		JBrowse link
G Rps26 ribosomal protein S26 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr10:128,460,398...128,462,375
Ensembl chr10:128,460,403...128,462,616 		JBrowse link
G Rps28 ribosomal protein S28 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr17:34,042,010...34,043,536
Ensembl chr17:34,038,001...34,043,536 		JBrowse link
G Rps29 ribosomal protein S29 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr12:69,204,495...69,205,891
Ensembl chr12:69,204,496...69,205,960 		JBrowse link
G Rps3 ribosomal protein S3 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 7:99,127,103...99,132,916
Ensembl chr 7:99,127,103...99,132,945 		JBrowse link
G Rpsa ribosomal protein SA located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 9:119,956,832...119,961,435
Ensembl chr 9:119,956,755...119,961,435 		JBrowse link
G Uba52 ubiquitin A-52 residue ribosomal protein fusion product 1 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 8:70,960,913...70,963,067
Ensembl chr 8:70,960,913...70,963,451 		JBrowse link
Sec61 translocon complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl6ip1 ADP-ribosylation factor-like 6 interacting protein 1 part_of IDA
IBA		 (PMID:10508919) MGI
GO_Central		 PMID:10508919 GO_REF:0000033 NCBI chr 7:117,718,113...117,728,848
Ensembl chr 7:117,718,114...117,728,885 		JBrowse link
G Sec61a1 SEC61 translocon subunit alpha 1 part_of IBA GO_Central GO_REF:0000033 NCBI chr 6:88,480,589...88,495,782
Ensembl chr 6:88,480,561...88,495,887 		JBrowse link
G Sec61a2 SEC61 translocon subunit alpha 2 part_of IBA GO_Central GO_REF:0000033 NCBI chr 2:5,875,788...5,900,199
Ensembl chr 2:5,875,798...5,900,243 		JBrowse link
G Sec61b SEC61 translocon subunit beta part_of IBA GO_Central GO_REF:0000033 NCBI chr 4:47,474,661...47,483,233
Ensembl chr 4:47,474,658...47,483,242 		JBrowse link
G Sec61bl SEC61 translocon subunit beta like part_of IBA GO_Central GO_REF:0000033 NCBI chr13:98,625,867...98,626,349
Ensembl chr13:98,626,041...98,626,350 		JBrowse link
G Ssr4 signal sequence receptor, delta part_of ISO RGD
MGI		 PMID:7916687 GO_REF:0000096 MGI:4417868 RGD:61758 NCBI chr  X:72,830,778...72,834,432
Ensembl chr  X:72,830,634...72,834,436 		JBrowse link
Sec62/Sec63 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sec63 SEC63 homolog, protein translocation regulator part_of IBA GO_Central GO_REF:0000033 NCBI chr10:42,637,492...42,708,510
Ensembl chr10:42,637,492...42,708,510 		JBrowse link
signal recognition particle receptor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rp9 retinitis pigmentosa 9 (human) part_of IDA (MGI:3688359|PMID:15652350) UniProt PMID:15652350 MGI:3688359 NCBI chr 9:22,359,607...22,379,652
Ensembl chr 9:22,322,343...22,381,039 		JBrowse link
G Srpra signal recognition particle receptor alpha part_of
located_in		 EXP
ISO		 (MGI:6869982|PMID:16439358)
(PMID:16439358)		 ComplexPortal
ComplexPortal
MGI		 PMID:16439358 GO_REF:0000119 MGI:4834177 MGI:6869982 NCBI chr 9:35,122,499...35,128,299
Ensembl chr 9:35,111,471...35,159,269 		JBrowse link
G Srprb signal recognition particle receptor, B subunit part_of
located_in		 ISO
EXP
IBA		 (PMID:16439358)
(MGI:6869982|PMID:16439358)		 MGI
ComplexPortal
ComplexPortal
GO_Central		 PMID:16439358 GO_REF:0000033 GO_REF:0000119 MGI:4834177 MGI:6869982 NCBI chr 9:103,065,232...103,079,264
Ensembl chr 9:103,065,231...103,079,336 		JBrowse link
Ssh1 translocon complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sec61g SEC61 translocon subunit gamma part_of IBA GO_Central GO_REF:0000033 NCBI chr11:16,451,638...16,458,484
Ensembl chr11:16,450,530...16,458,484 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 28585
    cellular anatomical entity 19620
      organelle subcompartment 1050
        endoplasmic reticulum subcompartment 755
          endoplasmic reticulum membrane 741
            rough endoplasmic reticulum membrane 43
              cytoplasmic side of rough endoplasmic reticulum membrane 27
              endoplasmic reticulum Sec complex + 1
              lumenal side of rough endoplasmic reticulum membrane 0
              signal recognition particle receptor complex 3
              translocon complex + 7
Path 2
Term Annotations click to browse term
  cellular_component 28585
    cellular anatomical entity 19620
      intracellular anatomical structure 14781
        intracellular organelle 13156
          intracellular membrane-bounded organelle 12012
            endoplasmic reticulum 1941
              endoplasmic reticulum subcompartment 755
                endoplasmic reticulum membrane 741
                  rough endoplasmic reticulum membrane 43
                    cytoplasmic side of rough endoplasmic reticulum membrane 27
                    endoplasmic reticulum Sec complex + 1
                    lumenal side of rough endoplasmic reticulum membrane 0
                    signal recognition particle receptor complex 3
                    translocon complex + 7
paths to the root