Gnrh1 (gonadotropin releasing hormone 1) - Rat Genome Database

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Gene: Gnrh1 (gonadotropin releasing hormone 1) Mus musculus
Analyze
Symbol: Gnrh1
Name: gonadotropin releasing hormone 1
RGD ID: 1553302
MGI Page MGI
Description: Predicted to enable gonadotropin hormone-releasing hormone activity and gonadotropin-releasing hormone receptor binding activity. Acts upstream of or within several processes, including negative regulation of neuron migration; regulation of ovarian follicle development; and response to ethanol. Located in extracellular space. Is expressed in several structures, including alimentary system; nervous system; olfactory system; and testis. Used to study hypogonadotropic hypogonadism 12 with or without anosmia. Human ortholog(s) of this gene implicated in breast cancer; hypogonadotropic hypogonadism 12 with or without anosmia; and periodontitis. Orthologous to human GNRH1 (gonadotropin releasing hormone 1).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: Gnrh; Gnrh2; gonadotropin releasing hormone 2; hpg; hypogonadal; L; LH; LHRH; Lhrh1; Lnrh; luteinizing hormone-releasing hormone I; progonadoliberin I; progonadoliberin-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391467,982,717 - 67,986,889 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1467,982,630 - 67,986,888 (+)EnsemblGRCm39 Ensembl
GRCm381467,745,181 - 67,749,440 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1467,745,181 - 67,749,439 (+)EnsemblGRCm38mm10GRCm38
MGSCv371468,363,286 - 68,367,493 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361466,699,676 - 66,702,621 (+)NCBIMGSCv36mm8
Celera1465,502,860 - 65,507,056 (+)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1434.66NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
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Original Reference(s)
Gnrh1Mousebreast cancer severityISOGNRH1 (Homo sapiens)2292541 RGD 
Gnrh1Mousehypogonadism treatmentIMP 9685135 RGD 
Gnrh1Mousehypogonadotropic hypogonadism 12 with or without anosmia  ISOGNRH1 (Homo sapiens)9685137DNA:frameshift mutation more ...RGD 
Gnrh1Mousehypogonadotropic hypogonadism 12 with or without anosmia  ISOGNRH1 (Homo sapiens)9685134DNA:frameshift mutation:cds:c.18-19insA (human)RGD 
Gnrh1Mousehypogonadotropic hypogonadism 12 with or without anosmia  ISOGNRH1 (Homo sapiens)9685133DNA:missense mutation:cds:p.R31C (human)RGD 
Gnrh1Mouseperiodontitis  ISOGNRH1 (Homo sapiens)9685136DNA:snp:exon:c.59C>G (human)RGD 
Gnrh1Mouseprostatic hypertrophy treatmentISOGnrh1 (Rattus norvegicus)10401238 RGD 
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Original Reference(s)
Gnrh1Mouseamenorrhea  ISOGNRH1 (Homo sapiens)8554872ClinVar Annotator: match by term: AmenorrheaClinVarPMID:28492532 and PMID:32870266
Gnrh1MouseCharcot-Marie-Tooth disease type 2E  ISOGNRH1 (Homo sapiens)8554872ClinVar Annotator: match by term: Charcot-Marie-Tooth disease type 2EClinVarPMID:19158810 more ...
Gnrh1Mousehypogonadotropic hypogonadism 12 with or without anosmia  ISOGNRH1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:19535795 more ...
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Original Reference(s)
Gnrh1MouseAdrenal Gland Neoplasms  ISOGNRH1 (Homo sapiens)11554173CTD Direct Evidence: therapeuticCTDPMID:19261682
Gnrh1Mouseadult respiratory distress syndrome  ISOGNRH1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:25070658
Gnrh1MouseBradycardia  ISOGNRH1 (Homo sapiens)11554173CTD Direct Evidence: therapeuticCTDPMID:6350720
Gnrh1MouseHeadache  ISOGNRH1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:12910066
Gnrh1Mousehyperprolactinemia  ISOGNRH1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:2204052
Gnrh1Mousehypertension  ISOGNRH1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:6350720
Gnrh1Mousehypogonadism  ISOGNRH1 (Homo sapiens)11554173CTD Direct Evidence: therapeuticCTDPMID:20063086
Gnrh1Mousehypogonadotropic hypogonadism 12 with or without anosmia  ISOGNRH1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
Gnrh1Mousehypogonadotropic hypogonadism 7 with or without anosmia  ISOGNRH1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:19535795
Gnrh1MouseHypothermia  ISOGNRH1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:6350720
Gnrh1MouseIntestinal Polyps  ISOGNRH1 (Homo sapiens)11554173CTD Direct Evidence: therapeuticCTDPMID:24431404
Gnrh1Mousemale infertility  ISOGNRH1 (Homo sapiens)11554173CTD Direct Evidence: therapeuticCTDPMID:20063086
Gnrh1MousePrecocious Puberty  ISOGNRH1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:18345393
Gnrh1MouseTachycardia  ISOGNRH1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:6350720
Gnrh1MouseVomiting  ISOGNRH1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:12910066
Gnrh1MouseWeight Loss  ISOGNRH1 (Homo sapiens)11554173CTD Direct Evidence: therapeuticCTDPMID:24431404
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Original Reference(s)
Gnrh1Mousehypogonadotropic hypogonadism 12 with or without anosmia  IAGP 13592920OMIM:614841MouseDO 
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Original Reference(s)
Gnrh1Mousehypogonadotropic hypogonadism 12 with or without anosmia  ISOGNRH1 (Homo sapiens)7240710 OMIM 

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Original Reference(s)
Gnrh1Mouse(-)-epigallocatechin 3-gallate multiple interactionsISOGNRH1 (Homo sapiens)6480464[potassium chromate(VI) co-treated with epigallocatechin gallate] results in increased expression of GNRH1 mRNACTDPMID:22079256
Gnrh1Mouse1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane decreases expressionEXP 64804642 more ...CTDPMID:10537130
Gnrh1Mouse1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane multiple interactionsISOGnrh1 (Rattus norvegicus)6480464o and p'-DDT affects the reaction [LHB protein results in increased susceptibility to GNRH1 protein]CTDPMID:17596564
Gnrh1Mouse1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane affects secretionISOGnrh1 (Rattus norvegicus)6480464o and p'-DDT affects the secretion of GNRH1 proteinCTDPMID:17596564
Gnrh1Mouse1,2-dichloroethane increases expressionEXP 6480464ethylene dichloride results in increased expression of GNRH1 proteinCTDPMID:28973639
Gnrh1Mouse17beta-estradiol multiple interactionsISOGNRH1 (Homo sapiens)6480464[Progesterone co-treated with Estradiol] results in increased secretion of GNRH1 protein more ...CTDPMID:10566683 and PMID:17054466
Gnrh1Mouse17beta-estradiol decreases expressionISOGNRH1 (Homo sapiens)6480464Estradiol results in decreased expression of GNRH1 mRNACTDPMID:31614463
Gnrh1Mouse17beta-estradiol affects secretionISOGnrh1 (Rattus norvegicus)6480464Estradiol affects the secretion of GNRH1 proteinCTDPMID:17596564
Gnrh1Mouse17beta-estradiol multiple interactionsISOGnrh1 (Rattus norvegicus)6480464Estradiol affects the reaction [LHB protein results in increased susceptibility to GNRH1 protein]CTDPMID:17596564
Gnrh1Mouse17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of GNRH1 mRNACTDPMID:10537130
Gnrh1Mouse17beta-estradiol multiple interactionsEXP 6480464Estradiol inhibits the reaction [ESR2 protein alternative form results in increased expression of GNRH1 mRNA] and fulvestrant inhibits the reaction [Estradiol results in decreased expression of GNRH1 mRNA]CTDPMID:10537130 and PMID:16439454
Gnrh1Mouse17beta-estradiol 3-benzoate multiple interactionsISOGnrh1 (Rattus norvegicus)6480464[estradiol 3-benzoate co-treated with GNRH1 protein] results in increased secretion of LH proteinCTDPMID:19574278
Gnrh1Mouse1H-[1,2,4]oxadiazolo[4,3-a]quinoxalin-1-one multiple interactionsISOGnrh1 (Rattus norvegicus)64804641H-(1 more ...CTDPMID:17110411
Gnrh1Mouse2,2',4,4',5,5'-hexachlorobiphenyl multiple interactionsEXP 6480464[2 more ...CTDPMID:19362103
Gnrh1Mouse2,2',4,4',5,5'-hexachlorobiphenyl affects expressionEXP 64804642 more ...CTDPMID:19362103
Gnrh1Mouse2,2',4,4'-Tetrabromodiphenyl ether decreases expressionISOGnrh1 (Rattus norvegicus)64804642 more ...CTDPMID:27291303
Gnrh1Mouse2,2',4,5-tetrachlorobiphenyl affects expressionEXP 64804642 more ...CTDPMID:19362103
Gnrh1Mouse2,2',4,5-tetrachlorobiphenyl multiple interactionsEXP 6480464[2 more ...CTDPMID:19362103
Gnrh1Mouse2,3',4,4',5-Pentachlorobiphenyl affects expressionEXP 64804642 more ...CTDPMID:19362103
Gnrh1Mouse2,3',4,4',5-Pentachlorobiphenyl multiple interactionsEXP 6480464[2 more ...CTDPMID:19362103

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Biological Process
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Original Reference(s)
Gnrh1Mouseestrous cycle  ISOGnrh1 (Rattus norvegicus)9068941 RGDPMID:9075691 and REF_RGD_ID:9685070
Gnrh1Mousefemale pregnancy  ISOGnrh1 (Rattus norvegicus)9068941 RGDPMID:17283369 and REF_RGD_ID:1599843
Gnrh1Mousemale sex determination  ISOGnrh1 (Rattus norvegicus)9068941 RGDPMID:7012206 and REF_RGD_ID:9685140
Gnrh1Mousemale sex determination involved_inISOGnrh1 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Gnrh1Mousenegative regulation of apoptotic process  ISOGnrh1 (Rattus norvegicus)9068941 RGDPMID:12457038 and REF_RGD_ID:728490
Gnrh1Mousenegative regulation of apoptotic process involved_inISOGnrh1 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Gnrh1Mousenegative regulation of immature T cell proliferation involved_inISOGnrh1 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Gnrh1Mousenegative regulation of immature T cell proliferation  ISOGnrh1 (Rattus norvegicus)9068941 RGDPMID:11092955 and REF_RGD_ID:9685051
Gnrh1Mousenegative regulation of neuron migration acts_upstream_of_or_withinIDA 2290270 PMID:23321696MGIPMID:23321696
Gnrh1Mousenegative regulation of neuron migration acts_upstream_of_or_withinIGIMGI:103038 and MGI:19180212290270 PMID:23321696MGIPMID:23321696
Gnrh1Mouseovulation cycle  ISOGnrh1 (Rattus norvegicus)9068941 RGDPMID:16672174 and REF_RGD_ID:1599845
Gnrh1Mouseregulation of gene expression acts_upstream_of_or_withinIMPMGI:18563932290270 PMID:17332066MGIPMID:17332066
Gnrh1Mouseregulation of ovarian follicle development acts_upstream_of_or_withinIMPMGI:18563932290270 PMID:10803590MGIPMID:10803590
Gnrh1Mouseregulation of signaling involved_inIBAPANTHER:PTN002575488 and UniProtKB:P370422290270 GO_CentralGO_REF:0000033
Gnrh1Mouseresponse to ethanol acts_upstream_of_or_withinIDA 2290270 PMID:7771642MGIPMID:7771642
Gnrh1Mouseresponse to lipopolysaccharide  ISOGnrh1 (Rattus norvegicus)9068941 RGDPMID:9075691 and REF_RGD_ID:9685070
Gnrh1Mouseresponse to peptide hormone  ISOGnrh1 (Rattus norvegicus)9068941prolactinRGDPMID:7760850 and REF_RGD_ID:9685050
Gnrh1Mouseresponse to potassium ion  ISOGnrh1 (Rattus norvegicus)9068941 RGDPMID:3282935 and REF_RGD_ID:9685069
Gnrh1Mouseresponse to prolactin  ISOGnrh1 (Rattus norvegicus)9068941 RGDPMID:7760850 and REF_RGD_ID:9685050
Gnrh1Mouseresponse to prostaglandin E  ISOGnrh1 (Rattus norvegicus)9068941 RGDPMID:3282935 and REF_RGD_ID:9685069
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Cellular Component
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Original Reference(s)
Gnrh1Mouseaxon terminus  ISOGnrh1 (Rattus norvegicus)9068941gonadotropin-releasing hormone-associated peptideRGDPMID:3044520 and REF_RGD_ID:9685148
Gnrh1Mouseaxon terminus located_inISOGnrh1 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Gnrh1Mousecytoplasmic side of rough endoplasmic reticulum membrane  ISOGnrh1 (Rattus norvegicus)9068941gonadotropin-releasing hormone-associated peptideRGDPMID:2183089 and REF_RGD_ID:9685146
Gnrh1Mousecytoplasmic side of rough endoplasmic reticulum membrane located_inISOGnrh1 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Gnrh1Mousedendrite located_inISOGnrh1 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Gnrh1Mousedendrite  ISOGnrh1 (Rattus norvegicus)9068941 RGDPMID:6183141 and REF_RGD_ID:9685145
Gnrh1Mouseextracellular space located_inISOGnrh1 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Gnrh1Mouseextracellular space located_inIDA 2290270 PMID:37189369UniProtPMID:37189369
Gnrh1Mouseextracellular space  ISOGnrh1 (Rattus norvegicus)9068941 RGDPMID:17283369 and REF_RGD_ID:1599843
Gnrh1Mouseextracellular space is_active_inIBAPANTHER:PTN000829165 more ...2290270 GO_CentralGO_REF:0000033
Gnrh1MouseGolgi-associated vesicle located_inISOGnrh1 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Gnrh1MouseGolgi-associated vesicle  ISOGnrh1 (Rattus norvegicus)9068941gonadotropin-releasing hormone-associated peptideRGDPMID:2183089 and REF_RGD_ID:9685146
Gnrh1Mouseneurosecretory vesicle located_inISOGnrh1 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Gnrh1Mouseneurosecretory vesicle  ISOGnrh1 (Rattus norvegicus)9068941 RGDPMID:6183141 and REF_RGD_ID:9685145
Gnrh1Mouseperikaryon located_inISOGnrh1 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Gnrh1Mouseperikaryon  ISOGnrh1 (Rattus norvegicus)9068941 RGDPMID:11842221 and REF_RGD_ID:70537
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Molecular Function

  

Imported Annotations - KEGG (archival)

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Original Reference(s)
Gnrh1Mousegonadotropin-releasing hormone signaling pathway  IEA 6907045 KEGGmmu:04912
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Original Reference(s)
Gnrh1Mouseabnormal anogenital distance  IAGP 5509061 MGIPMID:198666
Gnrh1Mouseabnormal circulating protein level  IAGP 5509061 MGIPMID:7541529
Gnrh1Mouseabnormal female reproductive system morphology  IAGP 5509061 MGIPMID:198666
Gnrh1Mouseabnormal female reproductive system physiology  IAGP 5509061 MGIPMID:21368045
Gnrh1Mouseabnormal gametogenesis  IAGP 5509061 MGIPMID:198666
Gnrh1Mouseabnormal hormone level  IAGP 5509061 MGIPMID:21368045
Gnrh1Mouseabnormal male reproductive system morphology  IAGP 5509061 MGIPMID:198666
Gnrh1Mouseabnormal ovary physiology  IAGP 5509061 MGIPMID:21368045
Gnrh1Mouseabnormal pituitary gland physiology  IAGP 5509061 MGIPMID:198666
Gnrh1Mouseabnormal scrotum morphology  IAGP 5509061 MGIPMID:198666
Gnrh1Mouseabnormal sex gland morphology  IAGP 5509061 MGIPMID:198666
Gnrh1Mouseabnormal splenic cell ratio  IAGP 5509061 MGIPMID:8046347
Gnrh1Mouseabnormal vagina orifice morphology  IAGP 5509061 MGIPMID:198666
Gnrh1Mouseabsent Leydig cells  IAGP 5509061 MGIPMID:19574395
Gnrh1Mouseabsent seminal vesicle  IAGP 5509061 MGIPMID:7541529
Gnrh1Mousearrest of male meiosis  IAGP 5509061 MGIPMID:198666
Gnrh1Mousecryptorchism  IAGP 5509061 MGIPMID:198666
Gnrh1Mousedecreased adrenocorticotropin level  IAGP 5509061 MGIPMID:198666
Gnrh1Mousedecreased body weight  IAGP 5509061 MGIPMID:198666
Gnrh1Mousedecreased circulating follicle stimulating hormone level  IAGP 5509061 MGIPMID:198666
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#
Reference Title
Reference Citation
1. Isolated familial hypogonadotropic hypogonadism and a GNRH1 mutation. Bouligand J, etal., N Engl J Med. 2009 Jun 25;360(26):2742-8. doi: 10.1056/NEJMoa0900136. Epub 2009 Jun 17.
2. GNRH1 mutations in patients with idiopathic hypogonadotropic hypogonadism. Chan YM, etal., Proc Natl Acad Sci U S A. 2009 Jul 14;106(28):11703-8. doi: 10.1073/pnas.0903449106. Epub 2009 Jun 30.
3. R31C GNRH1 mutation and congenital hypogonadotropic hypogonadism. Maione L, etal., PLoS One. 2013 Jul 25;8(7):e69616. doi: 10.1371/journal.pone.0069616. Print 2013.
4. The hypogonadal mouse: reproductive functions restored by gene therapy. Mason AJ, etal., Science. 1986 Dec 12;234(4782):1372-8.
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. MGD IEA MGD IEA
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. GnRH and LHR gene variants predict adverse outcome in premenopausal breast cancer patients. Piersma D, etal., Breast Cancer Res. 2007;9(4):R51.
9. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
10. Mouse MP Annotation Import Pipeline RGD automated import pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Combining growth hormone-releasing hormone antagonist with luteinizing hormone-releasing hormone antagonist greatly augments benign prostatic hyperplasia shrinkage. Rick FG, etal., J Urol. 2012 Apr;187(4):1498-504. doi: 10.1016/j.juro.2011.11.081. Epub 2012 Feb 17.
14. Large-scale investigation of genomic markers for severe periodontitis. Suzuki A, etal., Odontology. 2004 Sep;92(1):43-7.
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PMID:198666   PMID:1351769   PMID:1385960   PMID:1391342   PMID:1438263   PMID:1487704   PMID:1617216   PMID:1767338   PMID:1794058   PMID:2655994   PMID:2682637   PMID:2863757  
PMID:2895445   PMID:3024317   PMID:3085740   PMID:3594566   PMID:3708055   PMID:6087790   PMID:6382608   PMID:6393185   PMID:6409586   PMID:6816887   PMID:6816888   PMID:7045700  
PMID:7050282   PMID:7359482   PMID:7499242   PMID:7523206   PMID:7527351   PMID:7541529   PMID:7556426   PMID:7565769   PMID:7588276   PMID:7613033   PMID:7659091   PMID:7669221  
PMID:7680035   PMID:7704437   PMID:7720655   PMID:7753791   PMID:7771642   PMID:7813040   PMID:7830793   PMID:7864875   PMID:7958458   PMID:7958897   PMID:8046347   PMID:8119162  
PMID:8138159   PMID:8339285   PMID:8373519   PMID:8506085   PMID:8599937   PMID:8668176   PMID:8724000   PMID:8745266   PMID:8828479   PMID:8833241   PMID:8863187   PMID:8887325  
PMID:8903361   PMID:8921887   PMID:8943767   PMID:8954047   PMID:8997513   PMID:9013781   PMID:9032292   PMID:9090387   PMID:9120437   PMID:9121495   PMID:9139717   PMID:9231807  
PMID:9282997   PMID:9322952   PMID:9397953   PMID:9406858   PMID:9492048   PMID:9593910   PMID:9607807   PMID:9626655   PMID:9722184   PMID:9843641   PMID:9880599   PMID:9891005  
PMID:9922114   PMID:10064813   PMID:10067876   PMID:10349636   PMID:10433197   PMID:10433230   PMID:10559399   PMID:10803590   PMID:10803593   PMID:10809231   PMID:10842061   PMID:10862355  
PMID:10898796   PMID:10919273   PMID:10949075   PMID:11042159   PMID:11071759   PMID:11076861   PMID:11157077   PMID:11217851   PMID:11307033   PMID:11356665   PMID:11467973   PMID:11564710  
PMID:11733536   PMID:11738808   PMID:11818496   PMID:11914033   PMID:12088877   PMID:12185099   PMID:12193542   PMID:12193554   PMID:12219937   PMID:12351695   PMID:12403832   PMID:12403847  
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Gnrh1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391467,982,717 - 67,986,889 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1467,982,630 - 67,986,888 (+)EnsemblGRCm39 Ensembl
GRCm381467,745,181 - 67,749,440 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1467,745,181 - 67,749,439 (+)EnsemblGRCm38mm10GRCm38
MGSCv371468,363,286 - 68,367,493 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361466,699,676 - 66,702,621 (+)NCBIMGSCv36mm8
Celera1465,502,860 - 65,507,056 (+)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1434.66NCBI
GNRH1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38825,419,258 - 25,425,040 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl825,419,258 - 25,424,654 (-)EnsemblGRCh38hg38GRCh38
GRCh37825,276,774 - 25,282,556 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36825,332,691 - 25,338,473 (-)NCBINCBI36Build 36hg18NCBI36
Build 34825,332,692 - 25,337,836NCBI
Celera824,237,655 - 24,243,437 (-)NCBICelera
Cytogenetic Map8p21.2NCBI
HuRef823,821,751 - 23,827,534 (-)NCBIHuRef
CHM1_1825,478,220 - 25,484,032 (-)NCBICHM1_1
T2T-CHM13v2.0825,694,484 - 25,700,266 (-)NCBIT2T-CHM13v2.0
Gnrh1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81546,147,878 - 46,152,086 (+)NCBIGRCr8
mRatBN7.21541,972,482 - 41,976,690 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1541,942,339 - 41,976,690 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1541,972,905 - 41,973,581 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1543,837,145 - 43,841,353 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01544,987,366 - 44,991,574 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01543,432,699 - 43,436,907 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01544,441,856 - 44,446,064 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1544,441,856 - 44,446,064 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1544,442,555 - 44,442,875 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01547,151,131 - 47,155,339 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41547,303,309 - 47,307,517 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11547,319,088 - 47,323,286 (+)NCBI
Celera1541,636,731 - 41,640,939 (+)NCBICelera
Cytogenetic Map15p12NCBI
Gnrh1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540348,343,597 - 48,346,595 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540348,341,731 - 48,346,595 (-)NCBIChiLan1.0ChiLan1.0
GNRH1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2743,960,415 - 43,967,332 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1819,674,806 - 19,680,584 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0824,700,268 - 24,707,332 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1821,609,407 - 21,616,521 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl821,609,407 - 21,615,936 (-)Ensemblpanpan1.1panPan2
GNRH1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12532,038,631 - 32,043,192 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2532,039,613 - 32,043,028 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2532,623,319 - 32,627,816 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02532,237,978 - 32,242,489 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2532,238,905 - 32,242,478 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12532,193,651 - 32,198,162 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02532,043,144 - 32,047,652 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02532,208,954 - 32,213,456 (+)NCBIUU_Cfam_GSD_1.0
Gnrh1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494310,029,435 - 10,033,174 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367571,282,185 - 1,285,832 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367571,282,185 - 1,285,804 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GNRH1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl149,442,971 - 9,453,035 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1149,442,971 - 9,447,521 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21410,597,132 - 10,607,824 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GNRH1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1823,543,717 - 23,550,728 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl823,542,806 - 23,547,771 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605218,616,776 - 18,623,795 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gnrh1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475820,447,583 - 20,450,968 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475820,447,413 - 20,451,059 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Gnrh1
164 total Variants

Predicted Target Of
Summary Value
Count of predictions:88
Count of miRNA genes:87
Interacting mature miRNAs:88
Transcripts:ENSMUST00000111095
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 21 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
10043889Cia52_mcollagen induced arthritis QTL 52 (mouse)Not determined145608238190082509Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse

1 to 10 of 21 rows
D14Mit28  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381467,749,485 - 67,749,690UniSTSGRCm38
MGSCv371468,367,542 - 68,367,747UniSTSGRCm37
Celera1465,507,105 - 65,507,296UniSTS
Cytogenetic Map14D1UniSTS
cM Map1428.4UniSTS
Whitehead Genetic1437.2UniSTS
Whitehead_YAC14 UniSTS
Gnrh  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map14D1UniSTS
cM Map1439.5UniSTS
Gnrh  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381467,749,436 - 67,749,657UniSTSGRCm38
MGSCv371468,367,493 - 68,367,714UniSTSGRCm37
Celera1465,507,056 - 65,507,263UniSTS
Cytogenetic Map14D1UniSTS
cM Map1439.5UniSTS







Ensembl Acc Id: ENSMUST00000111095   ⟹   ENSMUSP00000106724
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1467,982,717 - 67,986,888 (+)Ensembl
GRCm38.p6 Ensembl1467,745,268 - 67,749,439 (+)Ensembl
Ensembl Acc Id: ENSMUST00000223929   ⟹   ENSMUSP00000153349
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1467,982,630 - 67,986,885 (+)Ensembl
GRCm38.p6 Ensembl1467,745,181 - 67,749,436 (+)Ensembl
Ensembl Acc Id: ENSMUST00000223951   ⟹   ENSMUSP00000153071
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1467,983,719 - 67,986,802 (+)Ensembl
GRCm38.p6 Ensembl1467,746,270 - 67,749,353 (+)Ensembl
RefSeq Acc Id: NM_001416514   ⟹   NP_001403443
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391467,982,717 - 67,986,889 (+)NCBI
RefSeq Acc Id: NM_008145   ⟹   NP_032171
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391467,982,717 - 67,986,889 (+)NCBI
GRCm381467,745,181 - 67,749,436 (+)NCBI
MGSCv371468,363,286 - 68,367,493 (+)RGD
Celera1465,502,860 - 65,507,056 (+)RGD
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_032171   ⟸   NM_008145
- Peptide Label: isoform 1 preproprotein
- UniProtKB: P13562 (UniProtKB/Swiss-Prot),   Q3UTE9 (UniProtKB/TrEMBL),   Q14AC4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000106724   ⟸   ENSMUST00000111095
Ensembl Acc Id: ENSMUSP00000153349   ⟸   ENSMUST00000223929
Ensembl Acc Id: ENSMUSP00000153071   ⟸   ENSMUST00000223951
RefSeq Acc Id: NP_001403443   ⟸   NM_001416514
- Peptide Label: isoform 2
- UniProtKB: A0A286YDB0 (UniProtKB/TrEMBL)

Name Modeler Protein Id AA Range Protein Structure
AF-P13562-F1-model_v2 AlphaFold P13562 1-90 view protein structure

RGD ID:8682826
Promoter ID:EPDNEW_M19444
Type:single initiation site
Name:Gnrh1_1
Description:Mus musculus gonadotropin releasing hormone 1 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381467,745,268 - 67,745,328EPDNEW
RGD ID:6825045
Promoter ID:MM_KWN:17315
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   BoneMarrow_0Hour,   MEF_B6
Transcripts:NM_008145
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361468,362,606 - 68,363,106 (+)MPROMDB
RGD ID:6825044
Promoter ID:MM_KWN:17316
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   Kidney,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000111095
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361468,363,436 - 68,364,802 (+)MPROMDB


1 to 21 of 21 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000015812 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000111095 ENTREZGENE
  ENSMUST00000111095.4 UniProtKB/Swiss-Prot
  ENSMUST00000223929 ENTREZGENE
  ENSMUST00000223951.2 UniProtKB/Swiss-Prot
InterPro GnRH UniProtKB/Swiss-Prot
  Gonadoliberin UniProtKB/Swiss-Prot
  Gonadoliberin_I_precursor UniProtKB/Swiss-Prot
KEGG Report mmu:14714 UniProtKB/Swiss-Prot
MGD MGI:95789 ENTREZGENE
NCBI Gene 14714 ENTREZGENE
PANTHER PROGONADOLIBERIN-1 UniProtKB/Swiss-Prot
  PTHR10522 UniProtKB/Swiss-Prot
Pfam GnRH UniProtKB/Swiss-Prot
PhenoGen Gnrh1 PhenoGen
PRINTS GONADOLIBRNI UniProtKB/Swiss-Prot
PROSITE GNRH UniProtKB/Swiss-Prot
UniProt A0A286YDB0 ENTREZGENE, UniProtKB/TrEMBL
  GON1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q14AC4 ENTREZGENE, UniProtKB/TrEMBL
  Q3UTE9 ENTREZGENE, UniProtKB/TrEMBL
1 to 21 of 21 rows