Cia51_m QTL Report (Mus musculus) - Rat Genome Database

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QTL Registration

QTL: Cia51_m (collagen induced arthritis QTL 51 (mouse)) Mus musculus

Symbol: Cia51_m
Name: collagen induced arthritis QTL 51 (mouse)
RGD ID: 10043888
Trait: Not determined
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm391466,103,893 - 68,785,736MOUSEQTLGRCm39
GRCm381465,866,444 - 68,548,287MOUSEQTLGRCm38
cM Map14syntenicMOUSEQTL
Cross Type: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



References

References - curated
# Reference Title Reference Citation
1. Mouse Genome Database (MGD) Mouse Genome Database (MGD)
Additional References at PubMed
PMID:18782270  


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
736082Adra1aadrenergic receptor, alpha 1a146687270567009549Mouse
737389Dpysl2dihydropyrimidinase-like 2146704031367148490Mouse
736753Stmn4stathmin-like 4146658180666599129Mouse
1315738Dock5dedicator of cytokinesis 5146798937768171021Mouse
1316358Pnma2paraneoplastic antigen MA2146713903867157512Mouse
69086Adam2a disintegrin and metallopeptidase domain 2146626477866315300Mouse
16080194930438E09RikRIKEN cDNA 4930438E09 gene146756949167635191Mouse
1613935Gm5464predicted gene 5464146710629967108454Mouse
16119171700001G11RikRIKEN cDNA 1700001G11 gene146653277666534578Mouse
733599Ptk2bPTK2 protein tyrosine kinase 2 beta146639070666518549Mouse
1615762Cdca2cell division cycle associated 2146791062967953290Mouse
62324Adam7a disintegrin and metallopeptidase domain 7146873478568771138Mouse
68979Cluclusterin146620609366218992Mouse
1552103Ccdc25coiled-coil domain containing 25146607475166104053Mouse
1619516Gm6878predicted gene 6878146754232167552160Mouse
1557744Trim35tripartite motif-containing 35146653447466548873Mouse
1332224Gulogulonolactone (L-) oxidase146622423566246703Mouse
1319521Scara3scavenger receptor class A, member 3146615684466191427Mouse
731055Ephx2epoxide hydrolase 2, cytoplasmic146632182166361971Mouse
10970Nefmneurofilament, medium polypeptide146835699468362453Mouse
1552280Neflneurofilament, light polypeptide146832131268326544Mouse
1553302Gnrh1gonadotropin releasing hormone 1146798271767986889Mouse
735908Chrna2cholinergic receptor nicotinic alpha 2 subunit146637068566390397Mouse
1620120Ebf2early B cell factor 2146747074167668401Mouse
1549974Bnip3lBCL2/adenovirus E1B interacting protein 3-like146722268867246580Mouse
736551Ppp2r2aprotein phosphatase 2, regulatory subunit B, alpha146725150567309920Mouse
1323769Kctd9potassium channel tetramerisation domain containing 9146795353667979760Mouse
1624507Gm10860predicted gene 10860146766764367670418Mouse
2294152Gm10233predicted pseudogene 10233146628239066283532Mouse
2294995Gm9130predicted gene 9130146703533567035878Mouse
2299482A230070E04RikRIKEN cDNA A230070E04 gene146836120168368820Mouse
2310480Gm9570predicted gene 9570146720442967207514Mouse
5142328Gm19222predicted gene, 19222146619817366200359Mouse
5142334Gm19216predicted gene, 19216146835132268352782Mouse
9616269Mir6539microRNA 6539146809708568097194Mouse
9601562Gm31107predicted gene, 31107146827984068316194Mouse
9666723Gm31227predicted gene, 31227146867486768734308Mouse
9655410Gm30438predicted gene, 30438146739661267426661Mouse
9659459Gm30806predicted gene, 30806146743897567446552Mouse
10000891Gm20675predicted gene 20675146746855067470644Mouse
10023543Gm41189predicted gene, 41189146827182868273408Mouse
10010183Gm41181predicted gene, 41181146614032066151703Mouse
10017700Gm41182predicted gene, 41182146615362666164841Mouse
10031159Gm41183predicted gene, 41183146657348566581582Mouse
10031747Gm41188predicted gene, 41188146818560968198275Mouse
10034317Gm41190predicted gene, 41190146867392768699091Mouse
10034517Gm41184predicted gene, 41184146669308166710064Mouse
10027205Gm41191predicted gene, 41191146877741668781088Mouse
10028442Gm38409predicted gene, 38409146771432267739528Mouse
15021509Gm52123predicted gene, 52123146732303767325880Mouse
15022152Gm52149predicted gene, 52149146749513567502267Mouse
15022455Gm52127predicted gene, 52127146827640168283894Mouse
15022494Gm52099predicted gene, 52099146646858266472557Mouse
14997176Gm24981predicted gene, 24981146780429967804430Mouse
15020857Gm52098predicted gene, 52098146641607966424977Mouse
15002884Gm24258predicted gene, 24258146720790167208033Mouse
15003108Gm22319predicted gene, 22319146840440268404523Mouse
39131109LOC110120540VISTA enhancer mm1500146673019066734568Mouse
39129087Gm57621predicted gene, 57621146668366566683801Mouse
39128557Gm10032predicted gene 10032146702994767035095Mouse
163686046LOC128927271CapStarr-seq enhancer MGSCv37_chr14:66503658-66503811146612227066122423Mouse
163657197LOC128927272CapStarr-seq enhancer MGSCv37_chr14:66915655-66915915146653420166534527Mouse
401703402LOC131386618STARR-seq mESC enhancer starr_37004146726963667270556Mouse
401702424LOC131386615STARR-seq mESC enhancer starr_36998146677718366779564Mouse
401700432LOC131386617STARR-seq mESC enhancer starr_37000146715781167160994Mouse
401702073LOC131386614STARR-seq mESC enhancer starr_36995146652158266522445Mouse
401702343LOC131386635STARR-seq mESC enhancer starr_37046146864786768649060Mouse
401702739LOC131386621STARR-seq mESC enhancer starr_37011146767160867672586Mouse
401715634LOC131386612STARR-seq mESC enhancer starr_36993146644437166445480Mouse
401713381LOC131386624STARR-seq mESC enhancer starr_37018146799746767999032Mouse
401714973LOC131386629STARR-seq mESC enhancer starr_37032146827351968275329Mouse
401714845LOC131386626STARR-seq mESC enhancer starr_37024146812489968126757Mouse
401711231LOC131386633STARR-seq mESC enhancer starr_37043146851958468521335Mouse
401710880LOC131386616STARR-seq mESC enhancer starr_36999146700010467001180Mouse
401712108LOC131386632STARR-seq mESC enhancer starr_37042146849748268498866Mouse
401711159LOC131386627STARR-seq mESC enhancer starr_37029146820808168210911Mouse
401710644LOC131386613STARR-seq mESC enhancer starr_36994146646654966467893Mouse
401709001LOC131386630STARR-seq mESC enhancer starr_37037146830184268304985Mouse
401709585LOC131386609STARR-seq mESC enhancer starr_36985146626501066266949Mouse
401707336LOC131386610STARR-seq mESC enhancer starr_36988146635952666361667Mouse
401704168LOC131386634STARR-seq mESC enhancer starr_37045146862748068628517Mouse
401703624LOC131386619STARR-seq mESC enhancer starr_37007146741286767414612Mouse
401706542LOC131386628STARR-seq mESC enhancer starr_37031146825103468252295Mouse
401704067LOC131386622STARR-seq mESC enhancer starr_37012146772840167729935Mouse
401704291LOC131386625STARR-seq mESC enhancer starr_37020146809012668091582Mouse
401716643LOC131386631STARR-seq mESC enhancer starr_37039146835353668356003Mouse
401716840LOC131386611STARR-seq mESC enhancer starr_36992146643010366433547Mouse
401717243LOC131386620STARR-seq mESC enhancer starr_37010146747888467480378Mouse
401717509LOC131386623STARR-seq mESC enhancer starr_37015146791289967914205Mouse
401833630LOC132443384STARR-positive B cell enhancer mm9_chr14:68910779-68911080146853017168530472Mouse
401832306LOC132443379STARR-positive B cell enhancer ABC_E8565146654076266541063Mouse
401832539LOC132443375STARR-positive B cell enhancer ABC_E5450146638507366385374Mouse
401837226LOC132443376STARR-positive B cell enhancer ABC_E7326146642235766422658Mouse
401837874LOC132443378STARR-positive B cell enhancer ABC_E7327146652017766520478Mouse
401838577LOC132443380STARR-positive B cell enhancer ABC_E1899146710598567106286Mouse
401840203LOC132443382STARR-positive B cell enhancer mm9_chr14:67627653-67627954146724626567246566Mouse
401840481LOC132443381STARR-positive B cell enhancer ABC_E2427146710640667106707Mouse
401840501LOC132443377STARR-positive B cell enhancer ABC_E3121146643723966437540Mouse
401841653LOC132443383STARR-positive B cell enhancer ABC_E7328146730979267310093Mouse

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145393744087937440Mouse
10043889Cia52_mcollagen induced arthritis QTL 52 (mouse)Not determined145608238190082509Mouse
1301562Hwq1_mheart weight quantitative locus 1 (mouse)Not determined145654674590546941Mouse
1357565wrmod1_mwobbler modifier 1 (mouse)Not determined1458179640101859473Mouse
11039527Ccc2_mcolitis susceptibility in the Collaborative Cross 2 (mouse)145991861294138217Mouse
1300666Fembm2_mfemoral bone morphometry 2 (mouse)Not determined146239746096397680Mouse
10043888Cia51_mcollagen induced arthritis QTL 51 (mouse)Not determined146610389368785736Mouse


Additional Information

Database Acc Id Source(s)
MGD MGI:3718703 MouseQtl

RGD Curation Notes
Note Type Note Reference