Gnrh1 (gonadotropin releasing hormone 1) - Rat Genome Database

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Gene: Gnrh1 (gonadotropin releasing hormone 1) Chinchilla lanigera
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Symbol: Gnrh1
Name: gonadotropin releasing hormone 1
RGD ID: 8931290
Description: ENCODES a protein that exhibits gonadotropin hormone-releasing hormone activity (ortholog); INVOLVED IN estrous cycle (ortholog); female pregnancy (ortholog); male sex determination (ortholog); ASSOCIATED WITH Adrenal Gland Neoplasms (ortholog); adult respiratory distress syndrome (ortholog); amenorrhea (ortholog); FOUND IN axon terminus (ortholog); cytoplasmic side of rough endoplasmic reticulum membrane (ortholog); dendrite (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: gonadotropin-releasing hormone 1 (luteinizing-releasing hormone); progonadoliberin-1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540348,343,597 - 48,346,595 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540348,341,731 - 48,346,595 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Gnrh1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540348,343,597 - 48,346,595 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540348,341,731 - 48,346,595 (-)NCBIChiLan1.0ChiLan1.0
GNRH1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38825,419,258 - 25,425,040 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl825,419,258 - 25,424,654 (-)EnsemblGRCh38hg38GRCh38
GRCh37825,276,774 - 25,282,556 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36825,332,691 - 25,338,473 (-)NCBINCBI36Build 36hg18NCBI36
Build 34825,332,692 - 25,337,836NCBI
Celera824,237,655 - 24,243,437 (-)NCBICelera
Cytogenetic Map8p21.2NCBI
HuRef823,821,751 - 23,827,534 (-)NCBIHuRef
CHM1_1825,478,220 - 25,484,032 (-)NCBICHM1_1
T2T-CHM13v2.0825,694,484 - 25,700,266 (-)NCBIT2T-CHM13v2.0
Gnrh1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391467,982,717 - 67,986,889 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1467,982,630 - 67,986,888 (+)EnsemblGRCm39 Ensembl
GRCm381467,745,181 - 67,749,440 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1467,745,181 - 67,749,439 (+)EnsemblGRCm38mm10GRCm38
MGSCv371468,363,286 - 68,367,493 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361466,699,676 - 66,702,621 (+)NCBIMGSCv36mm8
Celera1465,502,860 - 65,507,056 (+)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1434.66NCBI
Gnrh1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81546,147,878 - 46,152,086 (+)NCBIGRCr8
mRatBN7.21541,972,482 - 41,976,690 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1541,942,339 - 41,976,690 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1541,972,905 - 41,973,581 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1543,837,145 - 43,841,353 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01544,987,366 - 44,991,574 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01543,432,699 - 43,436,907 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01544,441,856 - 44,446,064 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1544,441,856 - 44,446,064 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1544,442,555 - 44,442,875 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01547,151,131 - 47,155,339 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41547,303,309 - 47,307,517 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11547,319,088 - 47,323,286 (+)NCBI
Celera1541,636,731 - 41,640,939 (+)NCBICelera
Cytogenetic Map15p12NCBI
GNRH1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2743,960,415 - 43,967,332 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1819,674,806 - 19,680,584 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0824,700,268 - 24,707,332 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1821,609,407 - 21,616,521 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl821,609,407 - 21,615,936 (-)Ensemblpanpan1.1panPan2
GNRH1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12532,038,631 - 32,043,192 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2532,039,613 - 32,043,028 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2532,623,319 - 32,627,816 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02532,237,978 - 32,242,489 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2532,238,905 - 32,242,478 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12532,193,651 - 32,198,162 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02532,043,144 - 32,047,652 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02532,208,954 - 32,213,456 (+)NCBIUU_Cfam_GSD_1.0
Gnrh1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494310,029,435 - 10,033,174 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367571,282,185 - 1,285,832 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367571,282,185 - 1,285,804 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GNRH1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl149,442,971 - 9,453,035 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1149,442,971 - 9,447,521 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21410,597,132 - 10,607,824 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GNRH1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1823,543,717 - 23,550,728 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl823,542,806 - 23,547,771 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605218,616,776 - 18,623,795 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gnrh1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475820,447,583 - 20,450,968 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475820,447,413 - 20,451,059 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000020976   ⟹   ENSCLAP00000020778
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540348,343,597 - 48,346,595 (-)Ensembl
RefSeq Acc Id: XM_005373712   ⟹   XP_005373769
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540348,341,731 - 48,345,219 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013514085   ⟹   XP_013369539
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540348,341,731 - 48,346,595 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005373769 (Get FASTA)   NCBI Sequence Viewer  
  XP_013369539 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000020778.1
RefSeq Acc Id: XP_005373769   ⟸   XM_005373712
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013369539   ⟸   XM_013514085
- Peptide Label: isoform X2
- UniProtKB: A0A8C2YSU6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000020778   ⟸   ENSCLAT00000020976


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000014234 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000020976.1 UniProtKB/TrEMBL
InterPro GnRH UniProtKB/TrEMBL
  Gonadoliberin UniProtKB/TrEMBL
  Gonadoliberin_I_precursor UniProtKB/TrEMBL
NCBI Gene Gnrh1 ENTREZGENE
PANTHER PROGONADOLIBERIN-1 UniProtKB/TrEMBL
  PTHR10522 UniProtKB/TrEMBL
Pfam GnRH UniProtKB/TrEMBL
PRINTS GONADOLIBRNI UniProtKB/TrEMBL
PROSITE GNRH UniProtKB/TrEMBL
UniProt A0A8C2YSU6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Gnrh1  gonadotropin releasing hormone 1    gonadotropin-releasing hormone 1 (luteinizing-releasing hormone)  Symbol and/or name change 5135510 APPROVED