Sec61g (SEC61 translocon subunit gamma) - Rat Genome Database

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Gene: Sec61g (SEC61 translocon subunit gamma) Mus musculus
Analyze
Symbol: Sec61g
Name: SEC61 translocon subunit gamma
RGD ID: 1314870
MGI Page MGI
Description: Predicted to enable protein transmembrane transporter activity and ribosome binding activity. Predicted to be involved in post-translational protein targeting to membrane, translocation. Predicted to be located in membrane. Predicted to be part of Ssh1 translocon complex. Is expressed in lung epithelium; ovary; and seminiferous cord. Orthologous to human SEC61G (SEC61 translocon subunit gamma).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: protein transport protein Sec61 subunit gamma; SEC61, gamma subunit
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm10177   Gm14989   Gm16412   Gm19280   Gm20094   Sec61g-ps1   Sec61g-ps2   Sec61g-ps3  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391116,451,638 - 16,458,484 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1116,450,530 - 16,458,484 (-)EnsemblGRCm39 Ensembl
GRCm381116,501,638 - 16,508,484 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1116,500,530 - 16,508,484 (-)EnsemblGRCm38mm10GRCm38
MGSCv371116,401,641 - 16,408,487 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361116,401,641 - 16,408,156 (-)NCBIMGSCv36mm8
Celera1116,882,412 - 16,889,258 (-)NCBICelera
Cytogenetic Map11A2NCBI
cM Map119.41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Large-scale screen for genes involved in gonad development. Wertz K and Herrmann BG, Mech Dev 2000 Nov;98(1-2):51-70.
8. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:1602141   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12617806   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:18799693  
PMID:19416849   PMID:21677750   PMID:21873635   PMID:22375059   PMID:28378742   PMID:32554809   PMID:36759724   PMID:37523556  


Genomics

Comparative Map Data
Sec61g
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391116,451,638 - 16,458,484 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1116,450,530 - 16,458,484 (-)EnsemblGRCm39 Ensembl
GRCm381116,501,638 - 16,508,484 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1116,500,530 - 16,508,484 (-)EnsemblGRCm38mm10GRCm38
MGSCv371116,401,641 - 16,408,487 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361116,401,641 - 16,408,156 (-)NCBIMGSCv36mm8
Celera1116,882,412 - 16,889,258 (-)NCBICelera
Cytogenetic Map11A2NCBI
cM Map119.41NCBI
SEC61G
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38754,752,253 - 54,759,211 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl754,752,250 - 54,759,974 (-)EnsemblGRCh38hg38GRCh38
GRCh37754,819,946 - 54,826,904 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36754,787,434 - 54,794,433 (-)NCBINCBI36Build 36hg18NCBI36
Build 34754,594,149 - 54,601,148NCBI
Celera754,925,611 - 54,932,604 (-)NCBICelera
Cytogenetic Map7p11.2NCBI
HuRef754,657,603 - 54,664,596 (-)NCBIHuRef
CHM1_1754,822,457 - 54,829,452 (-)NCBICHM1_1
T2T-CHM13v2.0754,912,179 - 54,919,137 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2754,825,706 - 54,832,698 (-)NCBI
Sec61g
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81495,113,083 - 95,119,458 (-)NCBIGRCr8
mRatBN7.21490,899,766 - 90,906,143 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1490,899,768 - 90,906,162 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1495,245,187 - 95,251,561 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01496,489,501 - 96,495,875 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01492,954,596 - 92,960,970 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01499,774,589 - 99,780,964 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1499,774,589 - 99,780,964 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01499,067,709 - 99,074,084 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41497,323,315 - 97,329,689 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1489,994,302 - 90,000,677 (-)NCBICelera
Cytogenetic Map14q22NCBI
Sec61g
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955456645,607 - 648,681 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955456645,607 - 651,764 (+)NCBIChiLan1.0ChiLan1.0
SEC61G
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2659,585,143 - 59,596,463 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17107,909,868 - 107,917,618 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0755,346,034 - 55,353,779 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1755,657,507 - 55,664,585 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl755,657,507 - 55,664,567 (-)Ensemblpanpan1.1panPan2
SEC61G
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1185,564,447 - 5,570,937 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl185,564,401 - 5,570,946 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha185,418,268 - 5,424,754 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0185,614,253 - 5,620,746 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl185,611,828 - 5,620,805 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1185,605,260 - 5,611,743 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0185,579,504 - 5,585,985 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0185,684,171 - 5,690,651 (-)NCBIUU_Cfam_GSD_1.0
Sec61g
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118109,106,431 - 109,112,600 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936678776,994 - 780,267 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936678776,979 - 783,125 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEC61G
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9139,128,296 - 139,135,727 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19139,128,287 - 139,135,831 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29153,348,321 - 153,355,866 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SEC61G
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1214,114,914 - 4,122,117 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl214,114,916 - 4,122,123 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606218,374,761 - 18,381,653 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sec61g
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624740881,416 - 886,594 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624740881,339 - 886,686 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sec61g
112 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:889
Count of miRNA genes:374
Interacting mature miRNAs:430
Transcripts:ENSMUST00000109641, ENSMUST00000109642, ENSMUST00000109643, ENSMUST00000131439, ENSMUST00000138695, ENSMUST00000166950, ENSMUST00000178855
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095914Pglq16_mpelvic girdle length QTL 16, 16 week (mouse)11325000018150000Mouse
27095919Pglq10_mpelvic girdle length QTL 10, 10 week (mouse)11325000018450000Mouse
27095925Pglq5_mpelvic girdle length QTL 5, 5 week (mouse)11325000019750000Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
10053676Eae44a_mexperimental allergic encephalomyelitis susceptibility 44a (mouse)Not determined11450789621379532Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse
1357518Tgyl1_mtriglyceride level 1 (mouse)Not determined11688027733916219Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
27226794Feml9_mfemur length 9, 5 week (mouse)11705000016750000Mouse
1300990Bits3_mbitterness sensitivity 3 (mouse)Not determined11837212142372260Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11901178043011942Mouse
13524844Ppiq9_mprepulse inhibition QTL 9 (mouse)11904999735077325Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111095123244951464Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111095123244951464Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
10412216Eae44_mexperimental allergic encephalomyelitis susceptibility 44 (mouse)Not determined111226863739950840Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse

Markers in Region
48.MMHAP90FLH6.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381116,507,636 - 16,507,811UniSTSGRCm38
MGSCv371116,407,639 - 16,407,814UniSTSGRCm37
Celera1116,888,410 - 16,888,585UniSTS
Cytogenetic Map11A2UniSTS
Whitehead_YAC11 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001109971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001109972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK012393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL603924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV070711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV456975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC019129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC019158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC081456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY468217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO808059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M88756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U11027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000109641   ⟹   ENSMUSP00000105269
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1116,451,651 - 16,458,069 (-)Ensembl
GRCm38.p6 Ensembl1116,501,651 - 16,508,069 (-)Ensembl
RefSeq Acc Id: ENSMUST00000109642   ⟹   ENSMUSP00000105270
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1116,451,387 - 16,458,166 (-)Ensembl
GRCm38.p6 Ensembl1116,501,387 - 16,508,166 (-)Ensembl
RefSeq Acc Id: ENSMUST00000109643   ⟹   ENSMUSP00000105271
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1116,450,530 - 16,458,484 (-)Ensembl
GRCm38.p6 Ensembl1116,500,530 - 16,508,484 (-)Ensembl
RefSeq Acc Id: ENSMUST00000131439
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1116,451,643 - 16,455,044 (-)Ensembl
GRCm38.p6 Ensembl1116,501,643 - 16,505,044 (-)Ensembl
RefSeq Acc Id: ENSMUST00000138695
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1116,456,092 - 16,458,132 (-)Ensembl
GRCm38.p6 Ensembl1116,506,092 - 16,508,132 (-)Ensembl
RefSeq Acc Id: ENSMUST00000166950   ⟹   ENSMUSP00000132348
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1116,451,638 - 16,458,484 (-)Ensembl
GRCm38.p6 Ensembl1116,501,638 - 16,508,484 (-)Ensembl
RefSeq Acc Id: ENSMUST00000178855   ⟹   ENSMUSP00000137362
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1116,451,638 - 16,458,484 (-)Ensembl
GRCm38.p6 Ensembl1116,501,638 - 16,508,484 (-)Ensembl
RefSeq Acc Id: NM_001109971   ⟹   NP_001103441
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391116,451,638 - 16,458,484 (-)NCBI
GRCm381116,501,638 - 16,508,484 (-)ENTREZGENE
MGSCv371116,401,641 - 16,408,487 (-)RGD
Celera1116,882,412 - 16,889,258 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001109972   ⟹   NP_001103442
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391116,451,638 - 16,458,484 (-)NCBI
GRCm381116,501,638 - 16,508,484 (-)ENTREZGENE
MGSCv371116,401,641 - 16,408,487 (-)RGD
Celera1116,882,412 - 16,889,258 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_011343   ⟹   NP_035473
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391116,451,638 - 16,458,484 (-)NCBI
GRCm381116,501,638 - 16,508,484 (-)ENTREZGENE
MGSCv371116,401,641 - 16,408,487 (-)RGD
Celera1116,882,412 - 16,889,258 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_035473   ⟸   NM_011343
- Peptide Label: isoform 1
- UniProtKB: G3UWH0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001103441   ⟸   NM_001109971
- Peptide Label: isoform 2
- UniProtKB: P60060 (UniProtKB/Swiss-Prot),   Q5SWJ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001103442   ⟸   NM_001109972
- Peptide Label: isoform 2
- UniProtKB: P60060 (UniProtKB/Swiss-Prot),   Q5SWJ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000137362   ⟸   ENSMUST00000178855
RefSeq Acc Id: ENSMUSP00000132348   ⟸   ENSMUST00000166950
RefSeq Acc Id: ENSMUSP00000105269   ⟸   ENSMUST00000109641
RefSeq Acc Id: ENSMUSP00000105270   ⟸   ENSMUST00000109642
RefSeq Acc Id: ENSMUSP00000105271   ⟸   ENSMUST00000109643

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P60060-F1-model_v2 AlphaFold P60060 1-68 view protein structure

Promoters
RGD ID:6822052
Promoter ID:MM_KWN:6495
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000109641,   ENSMUST00000109642,   ENSMUST00000109643,   NM_001109971,   OTTMUST00000011579
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361116,408,116 - 16,408,787 (-)MPROMDB
RGD ID:8674004
Promoter ID:EPDNEW_M15033
Type:initiation region
Name:Sec61g_1
Description:Mus musculus SEC61, gamma subunit , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15034  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381116,508,156 - 16,508,216EPDNEW
RGD ID:8674006
Promoter ID:EPDNEW_M15034
Type:initiation region
Name:Sec61g_2
Description:Mus musculus SEC61, gamma subunit , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15033  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381116,508,492 - 16,508,552EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1202066 AgrOrtholog
Ensembl Genes ENSMUSG00000078974 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000109641.2 UniProtKB/Swiss-Prot
  ENSMUST00000109642 ENTREZGENE
  ENSMUST00000109642.8 UniProtKB/Swiss-Prot
  ENSMUST00000109643.8 UniProtKB/Swiss-Prot
  ENSMUST00000166950 ENTREZGENE
  ENSMUST00000166950.8 UniProtKB/TrEMBL
  ENSMUST00000178855 ENTREZGENE
  ENSMUST00000178855.8 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.5.820 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Prot_translocase_SecE_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Translocase_Sec61-g UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Translocase_SecE/Sec61-g UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20335 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1202066 ENTREZGENE
NCBI Gene 20335 ENTREZGENE
PANTHER PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SEC61 GAMMA SUBUNIT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SecE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sec61g PhenoGen
PROSITE SECE_SEC61G UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF103456 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt G3UWH0 ENTREZGENE, UniProtKB/TrEMBL
  P60060 ENTREZGENE
  Q5SWJ8 ENTREZGENE, UniProtKB/TrEMBL
  SC61G_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary P38384 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-05-02 Sec61g  SEC61 translocon subunit gamma  Sec61g  SEC61, gamma subunit  Symbol and/or name change 5135510 APPROVED