organelle subcompartment - Ontology Report

Asph

aspartate-beta-hydroxylase

22,577,680

22,799,333

C2cd2l

C2CD2-like

48,641,792

48,652,119

Emd

emerin

156,452,847

156,455,858

Osbpl8

oxysterol binding protein-like 8

53,878,906

54,030,110

Stim1

stromal interaction molecule 1

167,373,894

167,533,412

Tmem110

transmembrane protein 110

6,903,212

6,958,786

RGD:1600115
RGD:13792537

Tmem201

transmembrane protein 201

166,672,700

166,695,288

endoplasmic reticulum tubular network

Symbol

Object Name

JBrowse

Chr

Start

Stop

Reference

Atl1

atlastin GTPase 1

92,229,764

92,370,428

Atl3

atlastin GTPase 3

222,746,023

222,788,439

Kpnb1

karyopherin subunit beta 1

85,096,517

85,124,641

Lnpk

lunapark, ER junction formation factor

61,432,128

61,494,828

Parp16

poly (ADP-ribose) polymerase family, member 16

70,712,393

70,731,212

Parp6

poly (ADP-ribose) polymerase family, member 6

64,439,933

64,472,443

Rab10

RAB10, member RAS oncogene family

27,668,387

27,721,120

Rab18

RAB18, member RAS oncogene family

59,844,781

59,876,170

Rab3gap1

RAB3 GTPase activating protein catalytic subunit 1

44,578,208

44,649,876

Reep1

receptor accessory protein 1

99,618,622

99,735,329

Reep5

receptor accessory protein 5

27,128,462

27,159,693

Rnf41

ring finger protein 41

2,827,242

2,854,230

Rtn4

reticulon 4

114,126,931

114,174,459

Spast

spastin

22,230,067

22,282,166

Zfyve27

zinc finger FYVE-type containing 27

261,415,172

261,438,539

RGD:632909
RGD:13792537
RGD:1624291

Golgi cis cisterna

Symbol

Object Name

JBrowse

Chr

Start

Stop

Reference

Atl1

atlastin GTPase 1

92,229,764

92,370,428

RGD:1359760

Bet1

Bet1 golgi vesicular membrane trafficking protein

29,082,368

29,092,638

RGD:14394613

Golga2

golgin A2

11,317,328

11,337,569

golgin A5

126,350,572

126,378,735

RGD:1599261

Golt1a

golgi transport 1A

50,532,116

50,550,029

Llgl1

LLGL scribble cell polarity complex component 1

46,940,873

46,955,524

RGD:8553614

Lyz2

lysozyme 2

60,335,968

60,341,264

RGD:1599861

Necab3

N-terminal EF-hand calcium binding protein 3

150,047,826

150,062,806

Smpd3

sphingomyelin phosphodiesterase 3

38,237,963

38,321,572

Tmem59

transmembrane protein 59

126,783,061

126,804,177

Xylt1

xylosyltransferase 1

186,939,698

187,264,758

Golgi cis cisterna membrane

Symbol

Object Name

JBrowse

Chr

Start

Stop

Reference

Nsg2

neuronal vesicle trafficking associated 2

15,867,885

15,928,169

Golgi cisterna

Symbol

Object Name

JBrowse

Chr

Start

Stop

Reference

Acp3

acid phosphatase 3

112,838,574

112,884,062

RGD:2299977

Bet1

Bet1 golgi vesicular membrane trafficking protein

29,082,368

29,092,638

RGD:69776

Cit

citron rho-interacting serine/threonine kinase

46,334,669

46,494,152

RGD:1358646

Furin

furin (paired basic amino acid cleaving enzyme)

142,185,092

142,198,167

RGD:1582625

Gcnt1

glucosaminyl (N-acetyl) transferase 1

236,547,729

236,585,037

Ggta1

glycoprotein, alpha-galactosyltransferase 1

14,614,099

14,701,185

RGD:2307253

golgin A5

126,350,572

126,378,735

Golph3

golgi phosphoprotein 3

62,360,754

62,388,773

Golph3l

golgi phosphoprotein 3-like

197,720,259

197,749,060

RGD:1600115
RGD:13792537

Pld1

phospholipase D1

113,651,967

113,849,403

RGD:2299914

Rab30

RAB30, member RAS oncogene family

157,573,344

157,667,973

Rab34

RAB34, member RAS oncogene family

65,448,111

65,452,178

Sorl1

sortilin related receptor 1

46,228,077

46,287,171

Stx16

syntaxin 16

172,154,739

172,183,699

Golgi cisterna membrane

Symbol

Object Name

JBrowse

Chr

Start

Stop

Reference

A3galt2

alpha 1,3-galactosyltransferase 2

146,933,592

146,945,882

Abo

ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase

4,374,679

4,394,374

Abo3

histo-blood group ABO system transferase 3

5,109,880

5,127,376

B4galnt3

beta-1,4-N-acetyl-galactosaminyl transferase 3

152,736,036

152,835,521

B4galnt4

beta-1,4-N-acetyl-galactosaminyl transferase 4

213,870,328

213,881,233

B4galt1

beta-1,4-galactosyltransferase 1

57,121,768

57,168,610

B4galt3

beta-1,4-galactosyltransferase 3

89,643,847

89,649,880

B4galt4

beta-1,4-galactosyltransferase 4

64,558,006

64,584,054

B4galt6

beta-1,4-galactosyltransferase 6

15,462,913

15,525,584

Bcap31

B-cell receptor-associated protein 31

157,094,365

157,126,397

RGD:1559139

Cant1

calcium activated nucleotidase 1

107,432,500

107,445,634

Chpf

chondroitin polymerizing factor

82,669,199

82,673,898

Chpf2

chondroitin polymerizing factor 2

7,108,461

7,113,940

Chsy1

chondroitin sulfate synthase 1

127,010,587

127,071,570

Chsy3

chondroitin sulfate synthase 3

54,243,626

54,497,475

Csgalnact1

chondroitin sulfate N-acetylgalactosaminyltransferase 1

22,704,318

23,075,071

Csgalnact2

chondroitin sulfate N-acetylgalactosaminyltransferase 2

150,148,626

150,185,062

Fut1

fucosyltransferase 1

101,599,018

101,602,440

Fut10

fucosyltransferase 10

64,623,246

64,716,248

Fut11

fucosyltransferase 11

4,031,504

4,035,064

Fut2

fucosyltransferase 2

101,631,633

101,651,668

Fut4

fucosyltransferase 4

13,258,768

13,262,729

Fut7

fucosyltransferase 7

2,637,281

2,646,497

Fut8

fucosyltransferase 8

100,305,957

100,537,208

Galnt1

polypeptide N-acetylgalactosaminyltransferase 1

16,141,062

16,187,271

Ggta1

glycoprotein, alpha-galactosyltransferase 1

14,614,099

14,701,185

Ggta1l1

glycoprotein, alpha-galactosyltransferase 1-like 1

14,555,916

14,573,016

RGD:632910
RGD:13792537
RGD:10400876

Golga2

golgin A2

11,317,328

11,337,569

Golim4

golgi integral membrane protein 4

174,321,303

174,413,847

Golph3

golgi phosphoprotein 3

62,360,754

62,388,773

Golph3l

golgi phosphoprotein 3-like

197,720,259

197,749,060

Gpr89b

G protein-coupled receptor 89B

198,999,945

199,038,702

Hace1

HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1

50,652,489

50,783,937

Inpp5e

inositol polyphosphate-5-phosphatase E

3,843,307

3,856,154

Mob4

MOB family member 4, phocein

61,720,583

61,744,532

Nsg1

neuronal vesicle trafficking associated 1

77,380,264

77,402,007

Nucb1

nucleobindin 1

101,480,160

101,511,029

RGD:9831131

Pitpnm1

phosphatidylinositol transfer protein, membrane-associated 1

219,348,672

219,362,094

Psenen

presenilin enhancer gamma secretase subunit

89,016,093

89,017,449

Rab21

RAB21, member RAS oncogene family

58,261,985

58,286,770

Sar1b

secretion associated, Ras related GTPase 1B

37,215,989

37,245,603

Scfd1

sec1 family domain containing 1

72,124,408

72,202,703

Sec1

secretory blood group 1

101,663,205

101,677,016

Sort1

sortilin 1

211,078,092

211,156,312

St3gal2

ST3 beta-galactoside alpha-2,3-sialyltransferase 2

43,273,251

43,324,265

St3gal3

ST3 beta-galactoside alpha-2,3-sialyltransferase 3

136,765,309

136,965,642

St3gal4

ST3 beta-galactoside alpha-2,3-sialyltransferase 4

36,264,741

36,314,811

St6gal1

ST6 beta-galactoside alpha-2,6-sialyltransferase 1

80,927,601

80,981,424

St6gal2

ST6 beta-galactoside alpha-2,6-sialyltransferase 2

6,966,291

7,060,499

Tmed2

transmembrane p24 trafficking protein 2

37,471,259

37,480,344

Tmed3

transmembrane p24 trafficking protein 3

97,075,194

97,083,107

Tmem115

transmembrane protein 115

116,289,590

116,294,454

Tmem87a

transmembrane protein 87A

112,128,138

112,174,097

Uxs1

UDP-glucuronate decarboxylase 1

11,165,006

11,240,329

Golgi medial cisterna

Symbol

Object Name

JBrowse

Chr

Start

Stop

Reference

B3galt6

Beta-1,3-galactosyltransferase 6

173,423,475

173,425,611

Glg1

golgi glycoprotein 1

42,983,879

43,088,074

RGD:68884

golgin A5

126,350,572

126,378,735

RGD:1599261

Gorasp2

golgi reassembly stacking protein 2

56,966,654

56,995,369

RGD:632865

Gosr1

golgi SNAP receptor complex member 1

63,405,526

63,442,257

Hid1

HID1 domain containing

103,899,160

103,919,649

LOC100364500

RT1 class I, locus CE11-like

2,704,153

2,707,111

Man2a1

mannosidase, alpha, class 2A, member 1

112,293,388

112,451,677

Nucb2

nucleobindin 2

185,106,773

185,143,278

RGD:633331

Pcsk5

proprotein convertase subtilisin/kexin type 5

236,031,988

236,313,858

RGD:11556238

Slc10a7

solute carrier family 10, member 7

32,857,984

33,081,359

St6gal1

ST6 beta-galactoside alpha-2,6-sialyltransferase 1

80,927,601

80,981,424

RGD:10043130

Tmem59

transmembrane protein 59

126,783,061

126,804,177

Yipf1

Yip1 domain family, member 1

126,932,730

126,968,110

Yipf2

Yip1 domain family, member 2

22,621,758

22,625,959

Yipf6

Yip1 domain family, member 6

68,625,760

68,637,780

Golgi stack

Symbol

Object Name

JBrowse

Chr

Start

Stop

Reference

AABR07057423.1

Akap9

A-kinase anchoring protein 9

27,195,346

27,331,582

Akr7a2

aldo-keto reductase family 7, member A2

157,759,448

157,768,473

Bet1l

Bet1 golgi vesicular membrane trafficking protein-like

213,602,836

213,606,507

RGD:1624291
RGD:14394613

Cln3

CLN3 lysosomal/endosomal transmembrane protein, battenin

197,986,384

197,999,726

Cog2

component of oligomeric golgi complex 2

57,286,955

57,322,853

Dnmbp

dynamin binding protein

263,625,503

263,718,784

Galnt2

polypeptide N-acetylgalactosaminyltransferase 2

57,043,858

57,115,123

Gbf1

golgi brefeldin A resistant guanine nucleotide exchange factor 1

265,904,616

266,033,107

RGD:2316367

Golga7

golgin A7

73,564,172

73,579,389

Ica1

islet cell autoantigen 1

34,635,509

34,780,187

RGD:724603

Lpcat2

lysophosphatidylcholine acyltransferase 2

15,470,177

15,540,704

Lypla2

lysophospholipase 2

154,315,033

154,319,629

Lyz2

lysozyme 2

60,335,968

60,341,264

RGD:1599861

Marchf4

membrane associated ring-CH-type finger 4

79,781,752

79,898,726

Marchf9

membrane associated ring-CH-type finger 9

70,341,989

70,349,126

Mbtps1

membrane-bound transcription factor peptidase, site 1

52,146,507

52,206,310

Mgat2

alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase

91,476,698

91,479,187

Mgat4a

alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A

44,033,433

44,126,946

Mgat4b

alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B

35,726,501

35,736,338

Mgat4d

MGAT4 family, member D

24,494,366

24,534,039

Nsf

N-ethylmaleimide sensitive factor, vesicle fusing ATPase

91,879,608

91,986,242

RGD:633463
RGD:13792537

Nsfl1c

NSFL1 cofactor

146,980,923

147,005,478

Plk3

polo-like kinase 3

135,997,725

136,002,900

Rab14

RAB14, member RAS oncogene family

14,373,270

14,395,357

RGD:8554557

Rab27b

RAB27B, member RAS oncogene family

68,486,006

68,644,595

Rab34

RAB34, member RAS oncogene family

65,448,111

65,452,178

Sulf1

sulfatase 1

5,999,520

6,186,901

Sulf2

sulfatase 2

162,791,349

162,872,984

Tmbim4

transmembrane BAX inhibitor motif containing 4

64,987,859

65,002,447

Tom1l1

target of myb1 like 1 membrane trafficking protein

78,173,847

78,219,805

Trappc4

trafficking protein particle complex 4

48,723,755

48,727,182

Uso1

USO1 vesicle transport factor

17,371,451

17,436,948

Vcpip1

valosin containing protein interacting protein 1

9,231,180

9,257,821

Vrk1

VRK serine/threonine kinase 1

129,835,788

129,902,839

Zfyve1

zinc finger FYVE-type containing 1

107,031,411

107,080,590

Golgi trans cisterna

Symbol

Object Name

JBrowse

Chr

Start

Stop

Reference

B4galt1

beta-1,4-galactosyltransferase 1

57,121,768

57,168,610

Bet1

Bet1 golgi vesicular membrane trafficking protein

29,082,368

29,092,638

Bet1l

Bet1 golgi vesicular membrane trafficking protein-like

213,602,836

213,606,507

golgin A5

126,350,572

126,378,735

RGD:1599261

Hid1

HID1 domain containing

103,899,160

103,919,649

Sgms1

sphingomyelin synthase 1

250,692,448

250,951,685

St6gal1

ST6 beta-galactoside alpha-2,6-sialyltransferase 1

80,927,601

80,981,424

RGD:10043130

Tmem59

transmembrane protein 59

126,783,061

126,804,177

Yipf1

Yip1 domain family, member 1

126,932,730

126,968,110

Yipf2

Yip1 domain family, member 2

22,621,758

22,625,959

Yipf6

Yip1 domain family, member 6

68,625,760

68,637,780

terminal cisterna

Symbol

Object Name

JBrowse

Chr

Start

Stop

Reference

Casq1

calsequestrin 1

90,592,676

90,602,365

RGD:2313244

Rtn2

reticulon 2

80,195,594

80,208,449

Ryr1

ryanodine receptor 1

87,959,596

88,066,252

RGD:12903237

terminal cisterna lumen

Symbol

Object Name

JBrowse

Chr

Start

Stop

Reference

Casq1

calsequestrin 1

90,592,676

90,602,365

RGD:2313258

trans-Golgi network

Symbol

Object Name

JBrowse

Chr

Start

Stop

Reference

AABR07057423.1

Adam10

ADAM metallopeptidase domain 10

77,107,355

77,237,483

RGD:631800

Ap1g1

adaptor related protein complex 1 subunit gamma 1

41,805,252

41,860,076

Ap4b1

adaptor related protein complex 4 subunit beta 1

206,293,679

206,305,705

Ap4m1

adaptor related protein complex 4 subunit mu 1

19,314,222

19,320,339

Aqp2

aquaporin 2

141,237,802

141,242,837

RGD:1581707

Arap1

ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1

166,459,062

166,525,200

RGD:2316188
RGD:13792537

Arf1

ADP-ribosylation factor 1

45,562,700

45,579,214

RGD:9684958

Arfgef1

ADP ribosylation factor guanine nucleotide exchange factor 1

8,666,046

8,760,458

RGD:2316366

Arfgef2

ADP ribosylation factor guanine nucleotide exchange factor 2

163,570,435

163,656,612

RGD:1304338
RGD:2316366

Arfrp1

ADP-ribosylation factor related protein 1

176,857,667

176,865,105

Arl1

ADP-ribosylation factor like GTPase 1

29,282,411

29,293,455

RGD:724590
RGD:1624291

Arl5a

ADP-ribosylation factor like GTPase 5A

37,922,544

37,947,434

Arl5b

ADP-ribosylation factor like GTPase 5B

82,065,893

82,092,693

Arl5c

ADP-ribosylation factor like GTPase 5C

85,939,836

85,948,131

Atg9a

autophagy related 9A

82,382,800

82,393,429

Atp11a

ATPase phospholipid transporting 11A

81,990,340

82,100,222

Atp11b

ATPase phospholipid transporting 11B (putative)

122,337,757

122,445,090

Atp11c

ATPase phospholipid transporting 11C

143,340,712

143,525,588

Atp2c1

ATPase secretory pathway Ca2+ transporting 1

113,953,959

114,039,965

RGD:1581811
RGD:13792537
RGD:1624291
RGD:11341707
RGD:8554046

Atp7a

ATPase copper transporting alpha

77,076,085

77,193,644

Atp7b

ATPase copper transporting beta

74,865,516

74,944,935

RGD:1581816
RGD:13792537
RGD:1624291

Atp8a1

ATPase phospholipid transporting 8A1

41,972,398

42,210,555

Atp8a2

ATPase phospholipid transporting 8A2

39,955,689

40,488,737

Atp9a

ATPase phospholipid transporting 9A (putative)

165,405,588

165,511,104

Atp9b

ATPase phospholipid transporting 9B (putative)

77,343,551

77,535,608

Atxn2

ataxin 2

40,264,601

40,335,637

Azin2

antizyme inhibitor 2

147,120,128

147,148,576

RGD:1624291
RGD:1600115
RGD:13792537

Bace1

beta-secretase 1

50,140,092

50,162,388

Bace2

beta-secretase 2

37,798,397

37,880,624

Becn1

beclin 1

89,209,944

89,225,297

RGD:1624291
RGD:11561931

Bet1l

Bet1 golgi vesicular membrane trafficking protein-like

213,602,836

213,606,507

RGD:14394613

Bicd1

BICD cargo adaptor 1

184,018,845

184,167,628

Birc6

baculoviral IAP repeat-containing 6

21,900,763

22,092,484

Bsn

bassoon (presynaptic cytomatrix protein)

116,873,721

116,965,396

RGD:9850093

Ca4

carbonic anhydrase 4

72,272,286

72,281,069

Cby1

chibby family member 1, beta catenin antagonist

120,891,930

120,898,318

Ccdc91

coiled-coil domain containing 91

181,873,465

182,043,593

Cdh1

cadherin 1

38,768,467

38,838,395

Chac1

ChaC glutathione-specific gamma-glutamylcyclotransferase 1

111,160,205

111,163,425

Chid1

chitinase domain containing 1

214,476,418

214,511,569

Chst1

carbohydrate sulfotransferase 1

81,441,785

81,512,829

Chst2

carbohydrate sulfotransferase 2

103,186,759

103,190,612

Chst3

carbohydrate sulfotransferase 3

29,731,828

29,768,656

Chst4

carbohydrate sulfotransferase 4

41,630,060

41,642,373

Chst5

carbohydrate sulfotransferase 5

44,115,065

44,136,092

Chst7

carbohydrate sulfotransferase 7

2,623,018

2,657,155

Clasp2

cytoplasmic linker associated protein 2

122,003,719

122,185,495

Clip3

CAP-GLY domain containing linker protein 3

88,750,453

88,766,453

Cln3

CLN3 lysosomal/endosomal transmembrane protein, battenin

197,986,384

197,999,726

Cltb

clathrin, light chain B

10,537,348

10,554,999

RGD:1600115
RGD:13792537
RGD:8553526

Clvs1

clavesin 1

22,380,318

22,580,391

Clvs2

clavesin 2

25,173,089

25,217,625

RGD:8553526
RGD:13792537

Cnst

consortin, connexin sorting protein

97,838,325

97,915,131

Coro7

coronin 7

11,090,200

11,144,289

Cpd

carboxypeptidase D

63,325,764

63,389,811

RGD:1298782

Crhr1

corticotropin releasing hormone receptor 1

92,191,473

92,233,662

RGD:1626245

Dennd5a

DENN domain containing 5A

174,524,047

174,588,553

Dnaaf6

dynein axonemal assembly factor 6

111,389,557

111,439,399

Dnm2

dynamin 2

22,458,869

22,540,649

RGD:9685290

Dop1a

DOP1 leucine zipper like protein A

94,122,733

94,225,131

Dop1b

DOP1 leucine zipper like protein B

33,929,142

34,027,447

Dpy30

dpy-30 histone methyltransferase complex regulatory subunit

22,296,128

22,316,894

Ecpas

Ecm29 proteasome adaptor and scaffold

75,928,510

76,040,771

Eipr1

EARP complex and GARP complex interacting protein 1

48,021,771

48,135,241

Fam91a1

family with sequence similarity 91, member A1

98,302,803

98,341,201

Flna

filamin A

156,460,785

156,487,245

Furin

furin (paired basic amino acid cleaving enzyme)

142,185,092

142,198,167

Fut4

fucosyltransferase 4

13,258,768

13,262,729

Fut7

fucosyltransferase 7

2,637,281

2,646,497

Fut9

fucosyltransferase 9

40,032,855

40,237,591

Gba

glucosylceramidase beta

188,511,781

188,522,602

Gbf1

golgi brefeldin A resistant guanine nucleotide exchange factor 1

265,904,616

266,033,107

Gcc2

GRIP and coiled-coil domain containing 2

27,832,960

27,879,764

Gcnt1

glucosaminyl (N-acetyl) transferase 1

236,547,729

236,585,037

Gga2

golgi associated, gamma adaptin ear containing, ARF binding protein 2

191,951,578

191,984,858

Gga3

golgi associated, gamma adaptin ear containing, ARF binding protein 3

104,137,655

104,156,576

Gh1

growth hormone 1

94,486,204

94,488,181

Golga1

golgin A1

23,309,318

23,353,439

RGD:8554694
RGD:13792537
RGD:1624291
RGD:1600115

Golph3

golgi phosphoprotein 3

62,360,754

62,388,773

Golph3l

golgi phosphoprotein 3-like

197,720,259

197,749,060

RGD:1600115
RGD:13792537

Golt1a

golgi transport 1A

50,532,116

50,550,029

Gper1

G protein-coupled estrogen receptor 1

17,309,122

17,315,267

Grn

granulin precursor

90,377,103

90,383,207

Gsap

gamma-secretase activating protein

10,423,090

10,517,887

Ift88

intraflagellar transport 88

37,690,417

37,786,855

RGD:8655529

Igf2r

insulin-like growth factor 2 receptor

48,176,095

48,264,482

RGD:2311624
RGD:1624291

Inpp5k

inositol polyphosphate-5-phosphatase K

63,775,639

63,796,879

Klhl20

kelch-like family member 20

78,912,361

78,957,226

Lamp2

lysosomal-associated membrane protein 2

124,722,628

124,766,079

Lap3

leucine aminopeptidase 3

70,102,813

70,121,797

RGD:8554250

LOC100294508

dyslexia susceptibility 2-like

144,779,306

144,872,271

LOC100909548

cation-dependent mannose-6-phosphate receptor-like

88,312,689

88,321,836

LOC103690091

proSAAS

15,324,261

15,328,617

LOC108348122

CAP-Gly domain-containing linker protein 3

90,962,921

90,978,946

Lrba

LPS responsive beige-like anchor protein

185,590,983

186,110,491

Lrrk2

leucine-rich repeat kinase 2

132,857,311

133,018,549

M6pr

mannose-6-phosphate receptor, cation dependent

155,084,755

155,093,896

Marchf4

membrane associated ring-CH-type finger 4

79,781,752

79,898,726

Marchf9

membrane associated ring-CH-type finger 9

70,341,989

70,349,126

Micall1

MICAL-like 1

120,343,900

120,375,151

Mlana

melan-A

247,869,756

247,883,558

Mme

membrane metallo-endopeptidase

153,799,203

153,880,910

Myo18a

myosin XVIIIa

64,979,770

65,080,535

Nbea

neurobeachin

145,011,648

145,513,439

Nmnat2

nicotinamide nucleotide adenylyltransferase 2

70,379,346

70,559,311

Ntsr2

neurotensin receptor 2

41,917,065

41,923,780

RGD:9743898

Nucb1

nucleobindin 1

101,480,160

101,511,029

RGD:9831132

Ocrl

OCRL, inositol polyphosphate-5-phosphatase

134,742,226

134,793,411

Optn

optineurin

77,167,700

77,218,374

Osbp

oxysterol binding protein

228,395,237

228,425,366

Pacsin1

protein kinase C and casein kinase substrate in neurons 1

7,241,248

7,286,702

Pacsin2

protein kinase C and casein kinase substrate in neurons 2

124,224,210

124,317,407

Pacsin3

protein kinase C and casein kinase substrate in neurons 3

80,072,425

80,081,058

Pam

peptidylglycine alpha-amidating monooxygenase

111,028,543

111,177,588

RGD:6483496

Pclo

piccolo (presynaptic cytomatrix protein)

16,454,904

17,058,921

RGD:9850093

Pcsk1

proprotein convertase subtilisin/kexin type 1

91,450,162

91,497,091

RGD:2308907

Pcsk2

proprotein convertase subtilisin/kexin type 2

137,618,891

137,923,385

Pcsk4

proprotein convertase subtilisin/kexin type 4

12,247,498

12,255,721

RGD:11556216
RGD:13792537

Pcsk5

proprotein convertase subtilisin/kexin type 5

236,031,988

236,313,858

Pcsk7

proprotein convertase subtilisin/kexin type 7

50,200,069

50,222,655

Pheta1

PH domain containing endocytic trafficking adaptor 1

40,225,316

40,230,573

Pheta2

PH domain containing endocytic trafficking adaptor 2

123,572,153

123,578,590

Pi4k2a

phosphatidylinositol 4-kinase type 2 alpha

261,337,594

261,362,509

Pi4k2b

phosphatidylinositol 4-kinase type 2 beta

60,567,968

60,594,821

Pifo

primary cilia formation

208,616,592

208,633,961

Plekha8

pleckstrin homology domain containing A8

84,770,294

84,820,887

Plekhj1

pleckstrin homology domain containing J1

11,784,314

11,786,476

Plod3

procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3

22,716,421

22,726,982

Plpp3

phospholipid phosphatase 3

124,690,214

124,765,499

Postn

periostin

143,656,820

143,688,087

Prepl

prolyl endopeptidase-like

8,316,861

8,346,293

Prkd1

protein kinase D1

71,035,017

71,349,531

Rab10

RAB10, member RAS oncogene family

27,668,387

27,721,120

RGD:734514
RGD:1624291

Rab11a

RAB11a, member RAS oncogene family

70,192,975

70,215,719

Rab13

RAB13, member RAS oncogene family

189,581,209

189,586,358

Rab14

RAB14, member RAS oncogene family

14,373,270

14,395,357

Rab21

RAB21, member RAS oncogene family

58,261,985

58,286,770

Rab29

RAB29, member RAS oncogene family

48,644,575

48,650,229

Rab30

RAB30, member RAS oncogene family

157,573,344

157,667,973

Rab31

RAB31, member RAS oncogene family

113,370,072

113,504,606

RGD:2316821

Rab32

RAB32, member RAS oncogene family

4,638,663

4,653,220

Rab38

RAB38, member RAS oncogene family

152,072,716

152,153,449

Rab6a

RAB6A, member RAS oncogene family

165,624,973

165,664,201

Rab7b

Rab7b, member RAS oncogene family

48,456,143

48,483,714

Rac1

Rac family small GTPase 1

13,090,316

13,111,841

Rbfox1

RNA binding fox-1 homolog 1

8,312,961

10,437,778

Relch

RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing

25,656,983

25,752,792

RGD1310209

similar to KIAA1324 protein

211,243,398

211,323,283

RGD1310429

similar to Protein Njmu-R1

67,738,131

67,751,049

RGD621098

similar to RIKEN cDNA D230025D16Rik

37,179,850

37,207,714

RGD:1302287
RGD:13792537

Rgs20

regulator of G-protein signaling 20

14,367,498

14,494,048

Scamp1

secretory carrier membrane protein 1

23,858,021

23,941,128

Scoc

short coiled-coil protein

24,584,435

24,614,167

Slc10a7

solute carrier family 10, member 7

32,857,984

33,081,359

Slc11a2

solute carrier family 11 member 2

142,025,812

142,062,892

Slc24a5

solute carrier family 24 member 5

117,335,212

117,354,480

Slc66a2

solute carrier family 66 member 2

76,768,466

76,805,773

Slc9a7

solute carrier family 9 member A7

2,434,918

2,615,936

Smpd4

sphingomyelin phosphodiesterase 4

87,522,971

87,546,687

Snap25

synaptosome associated protein 25

129,697,408

129,788,417

Snx9

sorting nexin 9

46,780,142

46,826,250

Sorl1

sortilin related receptor 1

46,228,077

46,287,171

Stx16

syntaxin 16

172,154,739

172,183,699

Stx4

syntaxin 4

199,287,384

199,295,606

Stx6

syntaxin 6

72,804,218

72,850,757

Stx8

syntaxin 8

54,512,922

54,753,302

Sys1

Sys1 golgi trafficking protein

160,908,779

160,913,281

Syt11

synaptotagmin 11

188,112,301

188,138,180

Syt17

synaptotagmin 17

188,034,614

188,101,590

Tas2r118

taste receptor, type 2, member 118

51,002,218

51,003,117

Tbc1d23

TBC1 domain family, member 23

45,401,396

45,459,841

Tgfb2

transforming growth factor, beta 2

105,039,639

105,142,010

RGD:1579782

Tgfbi

transforming growth factor, beta induced

8,400,123

8,429,338

RGD:8554696
RGD:13792537
RGD:1624291

Tgoln2

trans-golgi network protein 2

100,475,415

100,483,229

Tjap1

tight junction associated protein 1

17,086,452

17,110,770

Tmem230

transmembrane protein 230

124,870,867

124,879,274

Trappc6a

trafficking protein particle complex 6A

80,417,514

80,424,429

Trappc6b

trafficking protein particle complex 6B

80,142,126

80,153,216

Vamp2

vesicle-associated membrane protein 2

55,675,171

55,679,405

Vamp4

vesicle-associated membrane protein 4

80,460,699

80,483,597

Vamp5

vesicle-associated membrane protein 5

100,231,561

100,232,560

RGD:1300477

Vamp7

vesicle-associated membrane protein 7

18,996,566

19,033,714

RGD:11053432
RGD:13792537

Vps51

VPS51 subunit of GARP complex

Vps53

VPS53 subunit of GARP complex

64,218,596

64,341,064

RGD:11053432
RGD:1624291
RGD:1600115

Vps54

VPS54 subunit of GARP complex

106,153,407

106,207,715

Wdr11

WD repeat domain 11

202,770,810

202,816,336

Wipi1

WD repeat domain, phosphoinositide interacting 1

97,859,730

97,896,949

Wls

Wnt ligand secretion mediator

266,315,036

266,431,220

Yipf1

Yip1 domain family, member 1

126,932,730

126,968,110

Yipf2

Yip1 domain family, member 2

22,621,758

22,625,959

Yipf6

Yip1 domain family, member 6

68,625,760

68,637,780

trans-Golgi network membrane

Symbol

Object Name

JBrowse

Chr

Start

Stop

Reference

Aftph

aftiphilin

104,921,633

104,975,763

RGD:1624291
RGD:1600115
RGD:13792537

Arfip1

ADP-ribosylation factor interacting protein 1

183,503,250

183,582,798

Arfip2

ADP-ribosylation factor interacting protein 2

170,464,995

170,471,138

Atp7b

ATPase copper transporting beta

74,865,516

74,944,935

Baiap3

BAI1-associated protein 3

14,601,133

14,613,881

Bok

BCL2 family apoptosis regulator BOK

100,829,593

100,840,498

Bpnt2

3'(2'), 5'-bisphosphate nucleotidase 2

90,191,119

90,218,013

Cabp7

calcium binding protein 7

84,968,125

84,978,242

Caln1

calneuron 1

29,307,117

29,796,996

Clba1

clathrin binding box of aftiphilin containing 1

137,386,694

137,393,490

Clip3

CAP-GLY domain containing linker protein 3

88,750,453

88,766,453

Fut9

fucosyltransferase 9

40,032,855

40,237,591

Gnas

GNAS complex locus

172,374,957

172,434,988

Kif13a

kinesin family member 13A

18,151,582

18,335,027

Lgr5

leucine rich repeat containing G protein coupled receptor 5

58,447,097

58,587,787

Llgl1

LLGL scribble cell polarity complex component 1

46,940,873

46,955,524

RGD:8553614

LOC108348122

CAP-Gly domain-containing linker protein 3

90,962,921

90,978,946

Marchf1

membrane associated ring-CH-type finger 1

24,998,709

25,856,327

Mmp24

matrix metallopeptidase 24

151,307,309

151,355,401

Myo1b

myosin Ib

54,706,005

54,766,054

Nsg1

neuronal vesicle trafficking associated 1

77,380,264

77,402,007

RGD:13432228

Nsg2

neuronal vesicle trafficking associated 2

15,867,885

15,928,169

RGD:13432228

Pick1

protein interacting with PRKCA 1

120,465,472

120,484,824

Pld4

phospholipase D family, member 4

137,323,713

137,331,231

Rab31

RAB31, member RAS oncogene family

113,370,072

113,504,606

Scamp1

secretory carrier membrane protein 1

23,858,021

23,941,128

Scamp2

secretory carrier membrane protein 2

62,341,584

62,368,215

Scamp4

secretory carrier membrane protein 4

11,969,720

11,982,141

Scamp5

secretory carrier membrane protein 5

62,221,820

62,266,269

Stx6

syntaxin 6

72,804,218

72,850,757

RGD:1624291
RGD:8553703

Tepsin

TEPSIN, adaptor related protein complex 4 accessory protein

109,271,161

109,278,745

Tmem165

transmembrane protein 165

34,503,037

34,528,262

Tmem79

transmembrane protein 79

187,701,522

187,706,452