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ONTOLOGY REPORT - ANNOTATIONS


Term:rough endoplasmic reticulum membrane
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Accession:GO:0030867 term browser browse the term
Definition:The lipid bilayer surrounding the rough endoplasmic reticulum.
Synonyms:exact_synonym: RER membrane;   rough ER membrane
 xref: NIF_Subcellular:sao3089754107



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rough endoplasmic reticulum membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldob aldolase, fructose-bisphosphate B IDA RGD PMID:234468 RGD:2313431 NCBI chr 5:63,889,045...63,902,086
Ensembl chr 5:63,889,046...63,902,116
JBrowse link
G Ccdc47 coiled-coil domain containing 47 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:91,130,303...91,148,829
Ensembl chr10:91,130,303...91,148,881
JBrowse link
G Maco1 macoilin 1 located_in
is_active_in
ISO
IBA
ISS
(PMID:21589894)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:21589894 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 5:147,012,416...147,075,265
Ensembl chr 5:147,012,867...147,075,001
JBrowse link
G Nat8l N-acetyltransferase 8-like located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr14:76,756,077...76,762,712
Ensembl chr14:76,756,077...76,763,411
JBrowse link
G Pi4kb phosphatidylinositol 4-kinase beta located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:182,540,377...182,572,684
Ensembl chr 2:182,540,567...182,588,488
JBrowse link
G Plod1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 5:158,340,674...158,367,581
Ensembl chr 5:158,340,490...158,367,620
JBrowse link
G Plod2 procollagen lysine, 2-oxoglutarate 5-dioxygenase 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:93,084,548...93,167,255
Ensembl chr 8:93,084,513...93,167,255
JBrowse link
G Rho rhodopsin IDA RGD PMID:2525480 RGD:6893558 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
JBrowse link
G Suco SUN domain containing ossification factor located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:74,192,808...74,257,896
Ensembl chr13:74,193,573...74,257,896
JBrowse link
G Tmem97 transmembrane protein 97 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:63,438,228...63,447,311 JBrowse link
G Uba1 ubiquitin-like modifier activating enzyme 1 colocalizes_with ISO (PMID:1376922) RGD PMID:1376922 NCBI chr  X:1,508,700...1,530,677
Ensembl chr  X:1,508,666...1,530,636
JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 5:137,376,562...137,385,351
Ensembl chr 5:137,376,564...137,385,351
JBrowse link
cytoplasmic side of rough endoplasmic reticulum membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epm2a EPM2A glucan phosphatase, laforin located_in ISO
ISS
(PMID:11001928)
GO_REF:0000024
RGD
UniProt
PMID:11001928 GO_REF:0000024 NCBI chr 1:5,727,111...5,845,338
Ensembl chr 1:5,727,066...5,920,555
JBrowse link
G Gnrh1 gonadotropin releasing hormone 1 IDA gonadotropin-releasing hormone-associated peptide RGD PMID:2183089 RGD:9685146 NCBI chr15:41,972,482...41,976,690
Ensembl chr15:41,972,905...41,973,581
Ensembl chr15:41,972,905...41,973,581
JBrowse link
G LOC100360508 ribosomal protein S26-like located_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr13:39,863,688...39,864,147 JBrowse link
G Mgat2 alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 6:87,656,360...87,658,849
Ensembl chr 6:87,656,349...87,658,177
JBrowse link
G Rpl10 ribosomal protein L10 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr  X:152,054,547...152,056,757
Ensembl chr  X:152,054,452...152,056,761
JBrowse link
G Rpl11 ribosomal protein L11 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 5:148,274,060...148,277,708
Ensembl chr 5:148,274,069...148,277,599
JBrowse link
G Rpl23 ribosomal protein L23 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr10:82,771,878...82,775,840
Ensembl chr10:82,771,538...82,775,870
JBrowse link
G Rpl27 ribosomal protein L27 located_in ISS
ISO
GO_REF:0000024
(PMID:24930395)
UniProt
RGD
PMID:24930395 GO_REF:0000024 NCBI chr10:86,375,511...86,379,210
Ensembl chr10:86,375,454...86,379,193
JBrowse link
G Rpl29 ribosomal protein L29 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 8:107,068,929...107,070,963
Ensembl chr 8:107,068,480...107,070,914
JBrowse link
G Rpl31 ribosomal protein L31 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 9:41,647,401...41,650,886
Ensembl chr 9:41,647,426...41,662,129
JBrowse link
G Rpl32 ribosomal protein L32 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 4:148,864,048...148,867,612
Ensembl chr 4:148,864,044...148,867,612
JBrowse link
G Rpl35 ribosomal protein L35 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 3:22,753,255...22,756,217
Ensembl chr 3:22,753,253...22,756,243
JBrowse link
G Rps17 ribosomal protein S17 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 1:135,295,920...135,298,506
Ensembl chr 1:135,295,919...135,298,535
JBrowse link
G Rps18 ribosomal protein S18 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr20:4,931,427...4,935,538 JBrowse link
G Rps20 ribosomal protein S20 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 5:16,819,313...16,820,475
Ensembl chr 5:16,819,304...16,820,475
JBrowse link
G Rps21-ps1 ribosomal protein S21, pseudogene 1 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 5:153,387,133...153,387,476 JBrowse link
G Rps23 ribosomal protein S23 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 2:22,079,339...22,080,909
Ensembl chr 2:22,079,302...22,080,918
JBrowse link
G Rps26 ribosomal protein S26 located_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 7:1,057,332...1,058,882 JBrowse link
G Rps28 ribosomal protein S28 located_in ISS
ISO
GO_REF:0000024
(PMID:24930395)
UniProt
RGD
PMID:24930395 GO_REF:0000024 NCBI chr 7:14,607,801...14,609,170
Ensembl chr 7:14,607,801...14,609,170
JBrowse link
G Rps29 ribosomal protein S29 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 6:87,635,229...87,636,605
Ensembl chr 6:87,635,230...87,636,636
JBrowse link
G Rps3 ribosomal protein S3 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 1:153,778,363...153,783,663
Ensembl chr 1:153,777,472...153,783,680
JBrowse link
G Rpsa ribosomal protein SA located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 8:119,851,225...119,855,103
Ensembl chr 8:119,851,225...119,855,247
JBrowse link
Sec61 translocon complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl6ip1 ADP-ribosylation factor like GTPase 6 interacting protein 1 part_of IBA
ISO
PMID:21873635
(MGI:1858942|PMID:10508919)
RGD PMID:10508919 PMID:21873635 MGI:1858942, RGD:13792537 NCBI chr 1:172,430,475...172,439,990
Ensembl chr 1:172,430,489...172,439,994
JBrowse link
G Sec61a1 SEC61 translocon subunit alpha 1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:120,973,519...120,987,871
Ensembl chr 4:120,960,626...120,987,925
JBrowse link
G Sec61a2 SEC61 translocon subunit alpha 2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:72,407,574...72,445,630
Ensembl chr17:72,407,671...72,434,494
JBrowse link
G Sec61b SEC61 translocon subunit beta part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:61,773,594...61,781,804
Ensembl chr 5:61,773,594...61,781,804
JBrowse link
G Ssr3 signal sequence receptor subunit 3 NAS RGD PMID:7916687 RGD:61758 NCBI chr 2:149,605,005...149,625,069
Ensembl chr 2:149,605,005...149,625,132
JBrowse link
G Ssr4 signal sequence receptor subunit 4 IDA RGD PMID:7916687 RGD:61758 NCBI chr  X:151,524,191...151,528,218
Ensembl chr  X:151,524,009...151,528,202
JBrowse link
Sec62/Sec63 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sec63 SEC63 homolog, protein translocation regulator part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:46,245,101...46,314,055
Ensembl chr20:46,245,101...46,314,055
JBrowse link
signal recognition particle receptor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rp9 RP9, pre-mRNA splicing factor part_of ISO (MGI:3688359|PMID:15652350) RGD PMID:15652350 MGI:3688359 NCBI chr 8:20,955,447...21,005,225
Ensembl chr 8:20,941,362...21,005,175
JBrowse link
G Srpra SRP receptor subunit alpha part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:33,560,365...33,566,458
Ensembl chr 8:33,560,348...33,566,470
JBrowse link
G Srprb SRP receptor subunit beta part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:103,768,685...103,782,632 JBrowse link
Ssh1 translocon complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07028668.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07041141.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07048012.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07048013.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G LOC108348617 protein transport protein Sec61 subunit gamma pseudogene part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:75,638,449...75,638,655
Ensembl chr17:75,638,449...75,638,655
JBrowse link
G LOC499136 LRRGT00021 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:92,752,704...92,754,388
Ensembl chr 1:92,752,704...92,754,388
JBrowse link
G Sec61g SEC61 translocon subunit gamma part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:90,899,766...90,906,143
Ensembl chr14:90,899,768...90,906,162
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19895
    cellular anatomical entity 19598
      organelle subcompartment 1254
        endoplasmic reticulum subcompartment 959
          endoplasmic reticulum membrane 949
            rough endoplasmic reticulum membrane 51
              cytoplasmic side of rough endoplasmic reticulum membrane 22
              endoplasmic reticulum Sec complex + 1
              lumenal side of rough endoplasmic reticulum membrane 0
              signal recognition particle receptor complex 3
              translocon complex + 13
Path 2
Term Annotations click to browse term
  cellular_component 19895
    cellular anatomical entity 19598
      intracellular anatomical structure 14286
        intracellular organelle 12665
          intracellular membrane-bounded organelle 11161
            endoplasmic reticulum 1756
              endoplasmic reticulum subcompartment 959
                endoplasmic reticulum membrane 949
                  rough endoplasmic reticulum membrane 51
                    cytoplasmic side of rough endoplasmic reticulum membrane 22
                    endoplasmic reticulum Sec complex + 1
                    lumenal side of rough endoplasmic reticulum membrane 0
                    signal recognition particle receptor complex 3
                    translocon complex + 13
paths to the root