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nucleoid - Ontology Report - Rat Genome Database

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ONTOLOGY REPORT - ANNOTATIONS

Term:nucleoid
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Accession:GO:0009295 term browser browse the term
Definition:The region of a virus, bacterial cell, mitochondrion or chloroplast to which the nucleic acid is confined.
Synonyms:xref: Wikipedia:Nucleoid

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show annotations for term's descendants           Sort by:
mitochondrial chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Polg DNA polymerase gamma, catalytic subunit is_active_in ISO
IEA		 (PMID:26253742)
GO_REF:0000107		 RGD
Ensembl		 PMID:26253742 GO_REF:0000107 NCBI chr 1:142,792,119...142,808,933
Ensembl chr 1:133,382,766...133,398,567 		JBrowse link
G Twnk twinkle mtDNA helicase is_active_in ISO (PMID:26253742) RGD PMID:26253742 NCBI chr 1:253,817,074...253,823,958
Ensembl chr 1:243,868,330...243,874,802 		JBrowse link
mitochondrial nucleoid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadvl acyl-CoA dehydrogenase, very long chain located_in ISO
IEA		 (PMID:18063578)
GO_REF:0000107		 RGD
Ensembl		 PMID:18063578 GO_REF:0000107 NCBI chr10:55,231,558...55,236,786
Ensembl chr10:54,732,469...54,738,075 		JBrowse link
G Atad3a ATPase family, AAA domain containing 3A located_in IEA GO_REF:0000044
GO_REF:0000043		 UniProt GO_REF:0000043 GO_REF:0000044 NCBI chr 5:171,632,545...171,652,725
Ensembl chr 5:166,350,304...166,370,482 		JBrowse link
G Atp5f1b ATP synthase F1 subunit beta located_in ISO
IEA		 (PMID:18063578)
GO_REF:0000107		 RGD
Ensembl		 PMID:18063578 GO_REF:0000107 NCBI chr 7:1,100,058...1,106,461
Ensembl chr 7:515,460...567,273 		JBrowse link
G Clpx caseinolytic mitochondrial matrix peptidase chaperone subunit X located_in ISO
IEA		 (PMID:18063578)
GO_REF:0000107
GO_REF:0000044
GO_REF:0000043		 RGD
Ensembl
UniProt		 PMID:18063578 GO_REF:0000043 GO_REF:0000044 GO_REF:0000107 NCBI chr 8:74,700,602...74,740,244
Ensembl chr 8:65,805,511...65,845,082 		JBrowse link
G Cps1 carbamoyl-phosphate synthase 1 located_in ISO
IEA		 (PMID:18063578)
GO_REF:0000107		 RGD
Ensembl		 PMID:18063578 GO_REF:0000107 NCBI chr 9:76,063,863...76,186,739
Ensembl chr 9:68,614,153...68,737,033 		JBrowse link
G Dbt dihydrolipoamide branched chain transacylase E2 located_in ISO
IEA		 (PMID:18063578)
GO_REF:0000107		 RGD
Ensembl		 PMID:18063578 GO_REF:0000107 NCBI chr 2:207,166,660...207,195,528
Ensembl chr 2:204,481,737...204,510,609 		JBrowse link
G Ddx28 DEAD-box helicase 28 located_in ISO
IEA		 (PMID:18063578), (PMID:25683715)
GO_REF:0000107		 RGD
Ensembl		 PMID:18063578 PMID:25683715 GO_REF:0000107 NCBI chr19:50,819,643...50,821,573
Ensembl chr19:33,909,801...33,911,742 		JBrowse link
G Dhx30 DExH-box helicase 30 located_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:18063578), (PMID:25683715)
GO_REF:0000044
GO_REF:0000107
GO_REF:0000043		 UniProt
RGD
Ensembl		 PMID:18063578 PMID:25683715 GO_REF:0000024 GO_REF:0000043 GO_REF:0000044 GO_REF:0000107 NCBI chr 8:118,943,186...118,975,319
Ensembl chr 8:110,064,752...110,097,381 		JBrowse link
G Dna2 DNA replication helicase/nuclease 2 located_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr20:25,660,339...25,689,285
Ensembl chr20:25,662,055...25,716,319 		JBrowse link
G Dnaja3 DnaJ heat shock protein family (Hsp40) member A3 located_in ISO
IEA		 (PMID:18063578)
(PMID:16531398)
GO_REF:0000107		 RGD
Ensembl		 PMID:16531398 PMID:18063578 GO_REF:0000107 NCBI chr10:11,361,168...11,386,599
Ensembl chr10:10,854,732...10,880,161 		JBrowse link
G Elac2 elaC ribonuclease Z 2 located_in ISO
ISS
IEA		 (PMID:24703694)
GO_REF:0000024
GO_REF:0000044
GO_REF:0000043
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:24703694 GO_REF:0000024 GO_REF:0000043 GO_REF:0000044 GO_REF:0000107 NCBI chr10:50,131,449...50,154,755
Ensembl chr10:49,632,378...49,655,614 		JBrowse link
G ENSRNOG00000064842 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 Ensembl chr 4:26,121,987...26,122,678 JBrowse link
G Fastkd2 FAST kinase domains 2 located_in ISO
ISS
IEA		 (PMID:25683715)
GO_REF:0000024
GO_REF:0000043
GO_REF:0000044		 RGD
UniProt		 PMID:25683715 GO_REF:0000024 GO_REF:0000043 GO_REF:0000044 NCBI chr 9:72,659,961...72,681,986
Ensembl chr 9:65,168,228...65,188,174 		JBrowse link
G Fastkd5 FAST kinase domains 5 located_in ISO (PMID:25683715) RGD PMID:25683715 NCBI chr 3:117,830,219...117,847,707
Ensembl chr 3:117,830,083...117,847,820 		JBrowse link
G Grsf1 G-rich RNA sequence binding factor 1 located_in ISO
IEA		 (PMID:25683715)
GO_REF:0000107		 RGD
Ensembl		 PMID:25683715 GO_REF:0000107 NCBI chr14:19,696,925...19,713,427
Ensembl chr14:19,412,156...19,429,362 		JBrowse link
G Hadha hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha located_in ISO (PMID:18063578) RGD PMID:18063578 NCBI chr 6:31,907,801...31,947,434
Ensembl chr 6:26,187,956...26,227,869 		JBrowse link
G Hadhb hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta located_in IEA
ISO		 GO_REF:0000107
(PMID:18063578)		 Ensembl
RGD		 PMID:18063578 GO_REF:0000107 NCBI chr 6:31,873,404...31,907,557
Ensembl chr 6:26,153,578...26,184,869 		JBrowse link
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 located_in ISO
ISS
IEA		 (PMID:24703694)
GO_REF:0000024
GO_REF:0000107
GO_REF:0000043
GO_REF:0000044		 RGD
UniProt
Ensembl		 PMID:24703694 GO_REF:0000024 GO_REF:0000043 GO_REF:0000044 GO_REF:0000107 NCBI chr  X:24,568,551...24,571,012
Ensembl chr  X:21,089,122...21,109,488 		JBrowse link
G Hspa9 heat shock protein family A (Hsp70) member 9 located_in ISO
IEA		 (PMID:18063578)
GO_REF:0000107		 RGD
Ensembl		 PMID:18063578 GO_REF:0000107 NCBI chr18:26,810,004...26,832,958
Ensembl chr18:26,535,798...26,554,292 		JBrowse link
G Lonp1 lon peptidase 1, mitochondrial located_in ISO
IEA		 (PMID:18063578)
GO_REF:0000107		 RGD
Ensembl		 PMID:18063578 GO_REF:0000107 NCBI chr 9:1,534,581...1,546,908
Ensembl chr 9:1,447,447...1,459,771 		JBrowse link
G Lrpprc leucine-rich pentatricopeptide repeat containing located_in ISO
IEA		 (PMID:18063578)
GO_REF:0000107		 RGD
Ensembl		 PMID:18063578 GO_REF:0000107 NCBI chr 6:15,612,638...15,695,113
Ensembl chr 6:9,859,867...9,942,293 		JBrowse link
G Lrrc59 leucine rich repeat containing 59 located_in ISO
IEA		 (PMID:18063578)
GO_REF:0000107		 RGD
Ensembl		 PMID:18063578 GO_REF:0000107 NCBI chr10:80,069,162...80,083,820
Ensembl chr10:79,572,317...79,602,533 		JBrowse link
G Mpg N-methylpurine-DNA glycosylase located_in IEA GO_REF:0000044
GO_REF:0000043		 UniProt GO_REF:0000043 GO_REF:0000044 NCBI chr10:15,900,697...15,906,981
Ensembl chr10:15,395,782...15,402,520 		JBrowse link
G Mterf1 mitochondrial transcription termination factor 1 located_in ISO (PMID:18063578) RGD PMID:18063578 NCBI chr 4:31,181,048...31,188,130
Ensembl chr 4:30,226,343...30,233,584 		JBrowse link
G Mterf2 mitochondrial transcription termination factor 2 located_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:19366608)
GO_REF:0000043
GO_REF:0000044		 UniProt
RGD		 PMID:19366608 GO_REF:0000024 GO_REF:0000043 GO_REF:0000044 NCBI chr 7:18,598,202...18,608,278
Ensembl chr 7:18,598,103...18,620,684 		JBrowse link
G Mtnap1 mitochondrial nucleoid associated protein 1 located_in ISO (PMID:37676315) RGD PMID:37676315 NCBI chr10:98,728,661...98,738,693
Ensembl chr10:98,727,763...98,738,691 		JBrowse link
G Pif1 PIF1 5'-to-3' DNA helicase located_in ISO (PMID:23275553) RGD PMID:23275553 NCBI chr 8:75,005,820...75,015,331
Ensembl chr 8:66,111,072...66,120,200 		JBrowse link
G Poldip2 DNA polymerase delta interacting protein 2 located_in
is_active_in		 ISO
IBA
IEA		 (PMID:18063578)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:18063578 GO_REF:0000033 GO_REF:0000107 NCBI chr10:63,905,287...63,915,655
Ensembl chr10:63,407,213...63,417,605 		JBrowse link
G Polg DNA polymerase gamma, catalytic subunit located_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:18063578), (PMID:23275553)
GO_REF:0000043
GO_REF:0000044
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:18063578 PMID:23275553 GO_REF:0000024 GO_REF:0000043 GO_REF:0000044 GO_REF:0000107 NCBI chr 1:142,792,119...142,808,933
Ensembl chr 1:133,382,766...133,398,567 		JBrowse link
G Polg2 DNA polymerase gamma 2, accessory subunit located_in ISO
IEA		 (PMID:18063578), (PMID:26123486)
GO_REF:0000107		 RGD
Ensembl		 PMID:18063578 PMID:26123486 GO_REF:0000107 NCBI chr10:92,212,303...92,222,849
Ensembl chr10:91,712,586...91,723,008 		JBrowse link
G Polq DNA polymerase theta is_active_in ISO
IEA		 (PMID:29509408)
GO_REF:0000107		 RGD
Ensembl		 PMID:29509408 GO_REF:0000107 NCBI chr11:77,179,190...77,281,270
Ensembl chr11:63,673,816...63,775,878 		JBrowse link
G Polrmt RNA polymerase mitochondrial located_in ISO
IEA		 (PMID:18063578)
GO_REF:0000107		 RGD
Ensembl		 PMID:18063578 GO_REF:0000107 NCBI chr 7:10,610,149...10,620,411
Ensembl chr 7:9,959,576...9,969,791 		JBrowse link
G Prorp protein only RNase P catalytic subunit located_in ISO
IEA		 (PMID:24703694)
GO_REF:0000107		 RGD
Ensembl		 PMID:24703694 GO_REF:0000107 NCBI chr 6:78,404,821...78,497,562
Ensembl chr 6:72,670,847...72,762,416 		JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 located_in ISO
IEA		 (PMID:18063578)
GO_REF:0000107		 RGD
Ensembl		 PMID:18063578 GO_REF:0000107 NCBI chr 7:65,244,247...65,249,580
Ensembl chr 7:63,358,961...63,364,236 		JBrowse link
G Slc25a16 solute carrier family 25 member 16 located_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr20:25,659,847...25,717,080
Ensembl chr20:25,662,055...25,716,319 		JBrowse link
G Slc25a5 solute carrier family 25 member 5 located_in ISO (PMID:18063578) RGD PMID:18063578 NCBI chr  X:120,897,616...120,900,683
Ensembl chr  X:116,031,803...116,034,967 		JBrowse link
G Sod2 superoxide dismutase 2 IDA RGD PMID:19228881 RGD:2306615 NCBI chr 1:50,043,323...50,050,168
Ensembl chr 1:47,636,528...47,645,189 		JBrowse link
G Ssbp1 single stranded DNA binding protein 1 located_in
is_active_in		 ISS
IEA
IBA
ISO		 GO_REF:0000024
GO_REF:0000044
GO_REF:0000033
(PMID:18063578), (PMID:23275553), (PMID:31550240)
GO_REF:0000043
GO_REF:0000107		 UniProt
GO_Central
RGD
Ensembl		 PMID:18063578 PMID:23275553 PMID:31550240 GO_REF:0000024 GO_REF:0000033 GO_REF:0000043 GO_REF:0000044 GO_REF:0000107 NCBI chr 4:70,232,740...70,242,824
Ensembl chr 4:69,266,102...69,276,135 		JBrowse link
G Supv3l1 Suv3 like RNA helicase located_in ISO
IEA		 (PMID:18063578)
GO_REF:0000107
GO_REF:0000044
GO_REF:0000043		 RGD
Ensembl
UniProt		 PMID:18063578 GO_REF:0000043 GO_REF:0000044 GO_REF:0000107 NCBI chr20:30,921,248...30,941,779
Ensembl chr20:30,378,550...30,399,054 		JBrowse link
G Tefm transcription elongation factor, mitochondrial located_in
is_active_in		 IEA
ISO
ISS
IBA		 GO_REF:0000044
(PMID:21278163)
GO_REF:0000024
GO_REF:0000033
GO_REF:0000043
GO_REF:0000107		 UniProt
RGD
GO_Central
Ensembl		 PMID:21278163 GO_REF:0000024 GO_REF:0000033 GO_REF:0000043 GO_REF:0000044 GO_REF:0000107 NCBI chr10:65,617,547...65,622,042
Ensembl chr10:65,119,659...65,124,486 		JBrowse link
G Tert telomerase reverse transcriptase located_in ISO
IEA		 (PMID:21937513)
GO_REF:0000107		 RGD
Ensembl		 PMID:21937513 GO_REF:0000107 NCBI chr 1:31,465,766...31,488,650
Ensembl chr 1:29,637,506...29,659,561 		JBrowse link
G Tfam transcription factor A, mitochondrial located_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:24703694)
(PMID:18063578), (PMID:23275553), (PMID:24703694)
GO_REF:0000044
GO_REF:0000107
GO_REF:0000043		 UniProt
RGD
Ensembl		 PMID:18063578 PMID:23275553 PMID:24703694 GO_REF:0000024 GO_REF:0000043 GO_REF:0000044 GO_REF:0000107 NCBI chr20:17,355,373...17,367,422
Ensembl chr20:17,356,197...17,368,292 		JBrowse link
G Tfb1m transcription factor B1, mitochondrial located_in IEA
ISO		 GO_REF:0000107
(PMID:18063578)		 Ensembl
RGD		 PMID:18063578 GO_REF:0000107 NCBI chr 1:46,520,510...46,567,004
Ensembl chr 1:44,119,166...44,161,709 		JBrowse link
G Tfb2m transcription factor B2, mitochondrial located_in ISO
IEA		 (PMID:18063578)
GO_REF:0000107		 RGD
Ensembl		 PMID:18063578 GO_REF:0000107 NCBI chr13:93,810,859...93,828,678
Ensembl chr13:91,278,898...91,296,657 		JBrowse link
G Top1mt DNA topoisomerase I mitochondrial located_in
is_active_in		 ISO
IBA
IEA		 (PMID:18063578)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:18063578 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:109,223,269...109,248,855
Ensembl chr 7:107,342,527...107,366,049 		JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit located_in ISO
ISS
IEA		 (PMID:24703694)
GO_REF:0000024
GO_REF:0000044
GO_REF:0000107
GO_REF:0000043		 RGD
UniProt
Ensembl		 PMID:24703694 GO_REF:0000024 GO_REF:0000043 GO_REF:0000044 GO_REF:0000107 NCBI chr11:58,053,455...58,058,533
Ensembl chr11:44,584,113...44,589,568 		JBrowse link
G Tufm Tu translation elongation factor, mitochondrial located_in ISO
IEA		 (PMID:18063578)
GO_REF:0000107		 RGD
Ensembl		 PMID:18063578 GO_REF:0000107 NCBI chr 1:190,504,373...190,507,980
Ensembl chr 1:181,073,788...181,077,395 		JBrowse link
G Twnk twinkle mtDNA helicase located_in ISO (PMID:18063578), (PMID:18971204), (PMID:23275553) RGD PMID:18063578 PMID:18971204 PMID:23275553 NCBI chr 1:253,817,074...253,823,958
Ensembl chr 1:243,868,330...243,874,802 		JBrowse link
G Uqcc2 ubiquinol-cytochrome c reductase complex assembly factor 2 located_in ISO
ISS
IEA		 (PMID:19643811)
GO_REF:0000024
GO_REF:0000044
GO_REF:0000043		 RGD
UniProt		 PMID:19643811 GO_REF:0000024 GO_REF:0000043 GO_REF:0000044 NCBI chr20:5,204,682...5,217,080
Ensembl chr20:5,202,837...5,214,164
Ensembl chr17:5,202,837...5,214,164 		JBrowse link
G Vdac1 voltage-dependent anion channel 1 located_in ISO
IEA		 (PMID:18063578)
GO_REF:0000107		 RGD
Ensembl		 PMID:18063578 GO_REF:0000107 NCBI chr10:37,029,377...37,060,542
Ensembl chr10:36,532,244...36,559,640 		JBrowse link
G Vdac2 voltage-dependent anion channel 2 located_in ISO (PMID:18063578) RGD PMID:18063578 NCBI chr15:2,512,214...2,526,105
Ensembl chr15:2,463,056...2,476,553 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21366
    cellular anatomical structure 21071
      nucleoid 51
        bacterial nucleoid + 0
        mitochondrial nucleoid + 51
        plastid nucleoid + 0
        single-stranded DNA-binding protein complex 0
paths to the root