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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine nucleotide metabolic process
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Accession:GO:0006220 term browser browse the term
Definition:The chemical reactions and pathways involving a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms:exact_synonym: pyrimidine nucleotide metabolism
 broad_synonym: pyrimidine metabolic process;   pyrimidine metabolism



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pyrimidine nucleotide metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTPS2 CTP synthase 2 involved_in TAS (PMID:10899599) PINC PMID:10899599 NCBI chr  X:16,587,999...16,712,910
Ensembl chr  X:16,587,999...16,712,936
JBrowse link
G DCK deoxycytidine kinase involved_in IDA
TAS
(PMID:12808445)
(PMID:1996353)
UniProt
PINC
PMID:1996353 PMID:12808445 NCBI chr 4:70,993,649...71,030,914
Ensembl chr 4:70,992,538...71,030,914
JBrowse link
G DCTD dCMP deaminase involved_in IEA
TAS
(PMID:7685356) InterPro
PINC
PMID:7685356 GO_REF:0000002 NCBI chr 4:182,890,091...182,917,611
Ensembl chr 4:182,890,060...182,917,936
JBrowse link
G ENPP3 ectonucleotide pyrophosphatase/phosphodiesterase 3 involved_in IMP (PMID:11342463) UniProt PMID:11342463 NCBI chr 6:131,637,302...131,747,410
Ensembl chr 6:131,628,442...131,747,418
JBrowse link
G UPP1 uridine phosphorylase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15772079) Ensembl
MGI
PMID:15772079 GO_REF:0000107 NCBI chr 7:48,088,704...48,108,736
Ensembl chr 7:48,088,628...48,108,736
JBrowse link
'de novo' CTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTPS1 CTP synthase 1 involved_in IEA UniProt GO_REF:0000041 GO_REF:0000104 NCBI chr 1:40,979,696...41,012,565
Ensembl chr 1:40,979,300...41,012,565
JBrowse link
G CTPS2 CTP synthase 2 involved_in IEA UniProt GO_REF:0000041 NCBI chr  X:16,587,999...16,712,910
Ensembl chr  X:16,587,999...16,712,936
JBrowse link
'de novo' UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in IEA
IDA
(PMID:25678555) Ensembl
UniProt
MGI
PMID:25678555 GO_REF:0000041 GO_REF:0000107 NCBI chr 2:27,217,369...27,243,943
Ensembl chr 2:27,217,369...27,243,943
JBrowse link
G DHODH dihydroorotate dehydrogenase (quinone) involved_in IEA Ensembl
UniProt
GO_REF:0000041 GO_REF:0000107 NCBI chr16:72,008,744...72,027,659
Ensembl chr16:72,008,588...72,027,664
JBrowse link
G UMPS uridine monophosphate synthetase involved_in IEA Ensembl
InterPro
UniProt
GO_REF:0000002 GO_REF:0000041 GO_REF:0000107 NCBI chr 3:124,730,452...124,749,273
Ensembl chr 3:124,730,433...124,749,273
JBrowse link
CDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK1 cytidine/uridine monophosphate kinase 1 involved_in ISO
IBA
RGD
GO_Central
PMID:3010881 GO_REF:0000033 RGD:5133253 NCBI chr 1:47,333,790...47,378,839
Ensembl chr 1:47,333,790...47,394,866
JBrowse link
CMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCK deoxycytidine kinase involved_in IEA GOC GO_REF:0000108 NCBI chr 4:70,993,649...71,030,914
Ensembl chr 4:70,992,538...71,030,914
JBrowse link
G UCK1 uridine-cytidine kinase 1 involved_in IEA GOC GO_REF:0000108 NCBI chr 9:131,523,801...131,531,263
Ensembl chr 9:131,523,801...131,531,264
JBrowse link
G UCK2 uridine-cytidine kinase 2 involved_in IEA GOC GO_REF:0000108 NCBI chr 1:165,827,614...165,911,618
Ensembl chr 1:165,827,614...165,911,618
JBrowse link
G UCKL1 uridine-cytidine kinase 1 like 1 involved_in IEA GOC GO_REF:0000108 NCBI chr20:63,939,829...63,956,416
Ensembl chr20:63,939,829...63,956,416
JBrowse link
CMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:97,077,743...97,921,059
Ensembl chr 1:97,077,743...97,995,000
JBrowse link
G DPYS dihydropyrimidinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:104,379,431...104,467,055
Ensembl chr 8:104,330,324...104,467,055
JBrowse link
G NT5C3A 5'-nucleotidase, cytosolic IIIA involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:33,014,113...33,062,776
Ensembl chr 7:33,014,130...33,062,796
JBrowse link
G UPB1 beta-ureidopropionase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:24,495,332...24,528,390
Ensembl chr22:24,494,107...24,528,390
JBrowse link
G UPP1 uridine phosphorylase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:48,088,704...48,108,736
Ensembl chr 7:48,088,628...48,108,736
JBrowse link
G UPP2 uridine phosphorylase 2 involved_in ISO (PMID:14715930) MGI PMID:14715930 NCBI chr 2:157,995,179...158,136,154
Ensembl chr 2:157,876,679...158,136,154
JBrowse link
CTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTPS1 CTP synthase 1 involved_in IMP
IEA
IBA
IDA
(PMID:24870241)
(PMID:16179339)
UniProt
TreeGrafter
GO_Central
InterPro
PMID:16179339 PMID:24870241 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr 1:40,979,696...41,012,565
Ensembl chr 1:40,979,300...41,012,565
JBrowse link
G CTPS2 CTP synthase 2 involved_in IEA
IBA
InterPro
GO_Central
GO_REF:0000002 GO_REF:0000033 NCBI chr  X:16,587,999...16,712,910
Ensembl chr  X:16,587,999...16,712,936
JBrowse link
G NME1 NME/NM23 nucleoside diphosphate kinase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr17:51,153,559...51,162,168
Ensembl chr17:51,153,559...51,162,428
JBrowse link
G NME1-NME2 NME1-NME2 readthrough involved_in IEA InterPro GO_REF:0000002 NCBI chr17:51,153,559...51,171,744
Ensembl chr17:51,153,590...51,171,744
JBrowse link
G NME2 NME/NM23 nucleoside diphosphate kinase 2 involved_in ISO
IEA
RGD
InterPro
PMID:1316151 GO_REF:0000002 RGD:729254 NCBI chr17:51,165,536...51,171,744
Ensembl chr17:51,165,435...51,171,744
JBrowse link
G NME2P1 NME2 pseudogene 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr12:120,282,218...120,282,856
Ensembl chr12:120,282,303...120,282,716
JBrowse link
G NME3 NME/NM23 nucleoside diphosphate kinase 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr16:1,770,320...1,771,543
Ensembl chr16:1,770,320...1,771,561
JBrowse link
G NME4 NME/NM23 nucleoside diphosphate kinase 4 involved_in IEA InterPro GO_REF:0000002 NCBI chr16:396,729...400,754
Ensembl chr16:396,725...410,367
JBrowse link
G NME5 NME/NM23 family member 5 involved_in IEA InterPro GO_REF:0000002 NCBI chr 5:138,115,175...138,139,428
Ensembl chr 5:138,115,175...138,139,443
JBrowse link
G NME6 NME/NM23 nucleoside diphosphate kinase 6 involved_in IEA InterPro GO_REF:0000002 NCBI chr 3:48,288,402...48,301,367
Ensembl chr 3:48,290,722...48,301,685
JBrowse link
G NME7 NME/NM23 family member 7 involved_in IEA UniProt
InterPro
GO_REF:0000002 GO_REF:0000104 NCBI chr 1:169,132,531...169,367,797
Ensembl chr 1:169,132,531...169,367,948
JBrowse link
G NME9 NME/NM23 family member 9 involved_in IEA InterPro GO_REF:0000002 NCBI chr 3:138,261,436...138,329,851
Ensembl chr 3:138,261,437...138,329,886
JBrowse link
CTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENTPD7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in IDA (PMID:11278936) UniProt PMID:11278936 NCBI chr10:99,659,509...99,711,241
Ensembl chr10:99,659,509...99,711,241
JBrowse link
CTP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in IDA
IBA
(PMID:10858452) UniProt
GO_Central
PMID:10858452 GO_REF:0000033 NCBI chr 8:23,429,162...23,457,647
Ensembl chr 8:23,385,783...23,457,695
JBrowse link
G ENTPD7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:99,659,509...99,711,241
Ensembl chr10:99,659,509...99,711,241
JBrowse link
CTP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UCK1 uridine-cytidine kinase 1 involved_in IEA
IDA
(PMID:11306702) UniProt PMID:11306702 GO_REF:0000041 NCBI chr 9:131,523,801...131,531,263
Ensembl chr 9:131,523,801...131,531,264
JBrowse link
G UCK2 uridine-cytidine kinase 2 involved_in IEA
IDA
(PMID:11306702) UniProt PMID:11306702 GO_REF:0000041 NCBI chr 1:165,827,614...165,911,618
Ensembl chr 1:165,827,614...165,911,618
JBrowse link
G UCKL1 uridine-cytidine kinase 1 like 1 involved_in IEA UniProt GO_REF:0000041 NCBI chr20:63,939,829...63,956,416
Ensembl chr20:63,939,829...63,956,416
JBrowse link
dCDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:192455 RGD:5133256 NCBI chr 1:47,333,790...47,378,839
Ensembl chr 1:47,333,790...47,394,866
JBrowse link
dCMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:97,077,743...97,921,059
Ensembl chr 1:97,077,743...97,995,000
JBrowse link
G DPYS dihydropyrimidinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:104,379,431...104,467,055
Ensembl chr 8:104,330,324...104,467,055
JBrowse link
G NT5C 5', 3'-nucleotidase, cytosolic involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:75,130,228...75,131,742
Ensembl chr17:75,130,225...75,131,757
JBrowse link
G UPB1 beta-ureidopropionase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:24,495,332...24,528,390
Ensembl chr22:24,494,107...24,528,390
JBrowse link
G UPP1 uridine phosphorylase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:48,088,704...48,108,736
Ensembl chr 7:48,088,628...48,108,736
JBrowse link
G UPP2 uridine phosphorylase 2 involved_in IDA (PMID:12849978) MGI PMID:12849978 NCBI chr 2:157,995,179...158,136,154
Ensembl chr 2:157,876,679...158,136,154
JBrowse link
dCTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTPP1 dCTP pyrophosphatase 1 involved_in IMP
IBA
(PMID:24467396) UniProt
GO_Central
PMID:24467396 GO_REF:0000033 NCBI chr16:30,423,615...30,430,030
Ensembl chr16:30,423,615...30,430,030
JBrowse link
depyrimidination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MBD4 methyl-CpG binding domain 4, DNA glycosylase involved_in TAS Reactome Reactome:R-HSA-110329 NCBI chr 3:129,430,947...129,439,948
Ensembl chr 3:129,430,947...129,440,179
JBrowse link
G NEIL1 nei like DNA glycosylase 1 involved_in TAS Reactome Reactome:R-HSA-110329 NCBI chr15:75,347,039...75,357,115
Ensembl chr15:75,346,955...75,357,115
JBrowse link
G NEIL2 nei like DNA glycosylase 2 involved_in TAS Reactome Reactome:R-HSA-110329 NCBI chr 8:11,769,710...11,787,345
Ensembl chr 8:11,769,639...11,787,345
JBrowse link
G NTHL1 nth like DNA glycosylase 1 involved_in TAS Reactome Reactome:R-HSA-110329 NCBI chr16:2,039,820...2,047,834
Ensembl chr16:2,039,815...2,047,866
JBrowse link
G OGG1 8-oxoguanine DNA glycosylase involved_in TAS Reactome Reactome:R-HSA-110329 NCBI chr 3:9,749,952...9,783,108
Ensembl chr 3:9,749,944...9,788,219
JBrowse link
G SMUG1 single-strand-selective monofunctional uracil-DNA glycosylase 1 involved_in TAS Reactome Reactome:R-HSA-110329 NCBI chr12:54,158,235...54,188,985
Ensembl chr12:54,121,277...54,189,008
JBrowse link
G TDG thymine DNA glycosylase involved_in TAS Reactome Reactome:R-HSA-110329 NCBI chr12:103,965,872...103,988,874
Ensembl chr12:103,965,822...103,988,874
JBrowse link
G UNG uracil DNA glycosylase involved_in TAS Reactome Reactome:R-HSA-110329 NCBI chr12:109,097,597...109,110,992
Ensembl chr12:109,097,597...109,126,725
JBrowse link
dTDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK2 cytidine/uridine monophosphate kinase 2 involved_in ISO
IBA
IEA
RGD
GO_Central
Ensembl
PMID:192455 GO_REF:0000033 GO_REF:0000107 RGD:5133256 NCBI chr 2:6,840,553...6,866,635
Ensembl chr 2:6,840,570...6,866,635
JBrowse link
G DTYMK deoxythymidylate kinase acts_upstream_of_or_within
involved_in
ISO
IEA
IBA
IDA
(PMID:8845311)
(PMID:12614151)
RGD
MGI
TreeGrafter
GO_Central
Ensembl
UniProt
InterPro
PMID:220041 PMID:8845311 PMID:12614151 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 RGD:5133687 NCBI chr 2:241,675,747...241,686,815
Ensembl chr 2:241,675,747...241,686,944
JBrowse link
dTMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DUT deoxyuridine triphosphatase involved_in IDA (PMID:10952785), (PMID:15322254) MGI PMID:10952785 PMID:15322254 NCBI chr15:48,331,095...48,343,373
Ensembl chr15:48,331,011...48,343,373
JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:18,327,873...18,363,550
Ensembl chr17:18,327,873...18,363,550
JBrowse link
G TYMS thymidylate synthetase involved_in ISO
IEA
IBA
IDA
(PMID:11278511), (PMID:15093541), (PMID:8845352) RGD
TreeGrafter
GO_Central
InterPro
Ensembl
CAFA
PMID:8845352 PMID:9894005 PMID:11278511 PMID:15093541 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 RGD:1545055 NCBI chr18:657,653...673,578
Ensembl chr18:657,653...673,578
JBrowse link
dTMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NT5C 5', 3'-nucleotidase, cytosolic involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:75,130,228...75,131,742
Ensembl chr17:75,130,225...75,131,757
JBrowse link
G TYMP thymidine phosphorylase involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:50,525,752...50,530,085
Ensembl chr22:50,525,752...50,530,032
JBrowse link
G UPP1 uridine phosphorylase 1 involved_in
NOT|involved_in
IEA
ISO
(MGI:3584214|PMID:15772079) Ensembl
UniProt
PMID:15772079 GO_REF:0000107 MGI:3584214 NCBI chr 7:48,088,704...48,108,736
Ensembl chr 7:48,088,628...48,108,736
JBrowse link
dTTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK2 cytidine/uridine monophosphate kinase 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:6,840,553...6,866,635
Ensembl chr 2:6,840,570...6,866,635
JBrowse link
G DTYMK deoxythymidylate kinase involved_in ISO
IBA
IEA
RGD
GO_Central
TreeGrafter
Ensembl
UniProt
PMID:220041 GO_REF:0000033 GO_REF:0000041 GO_REF:0000107 GO_REF:0000118 RGD:5133687 NCBI chr 2:241,675,747...241,686,815
Ensembl chr 2:241,675,747...241,686,944
JBrowse link
G TBPL1 TATA-box binding protein like 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11861477) Ensembl
MGI
PMID:11861477 GO_REF:0000107 NCBI chr 6:133,952,174...133,990,432
Ensembl chr 6:133,952,170...133,990,432
JBrowse link
G TYMS thymidylate synthetase involved_in IEA UniProt GO_REF:0000041 NCBI chr18:657,653...673,578
Ensembl chr18:657,653...673,578
JBrowse link
dTTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTPP1 dCTP pyrophosphatase 1 NOT|involved_in IMP (PMID:24467396) UniProt PMID:24467396 NCBI chr16:30,423,615...30,430,030
Ensembl chr16:30,423,615...30,430,030
JBrowse link
dUDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:3010881 RGD:5133253 NCBI chr 1:47,333,790...47,378,839
Ensembl chr 1:47,333,790...47,394,866
JBrowse link
G CMPK2 cytidine/uridine monophosphate kinase 2 involved_in ISO
IBA
IEA
RGD
GO_Central
Ensembl
PMID:192455 GO_REF:0000033 GO_REF:0000107 RGD:5133256 NCBI chr 2:6,840,553...6,866,635
Ensembl chr 2:6,840,570...6,866,635
JBrowse link
G DTYMK deoxythymidylate kinase involved_in IEA
IBA
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 2:241,675,747...241,686,815
Ensembl chr 2:241,675,747...241,686,944
JBrowse link
dUMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DUT deoxyuridine triphosphatase involved_in ISO
IBA
IEA
RGD
GO_Central
UniProt
InterPro
PMID:1315924 PMID:3032103 GO_REF:0000002 GO_REF:0000033 GO_REF:0000041 GO_REF:0000104 RGD:2300191 RGD:2301218 NCBI chr15:48,331,095...48,343,373
Ensembl chr15:48,331,011...48,343,373
JBrowse link
G LINC03106 long intergenic non-protein coding RNA 3106 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:26,066,675...26,118,408
Ensembl chr 9:26,066,675...26,118,408
JBrowse link
dUMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:97,077,743...97,921,059
Ensembl chr 1:97,077,743...97,995,000
JBrowse link
G DPYS dihydropyrimidinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:104,379,431...104,467,055
Ensembl chr 8:104,330,324...104,467,055
JBrowse link
G NT5C 5', 3'-nucleotidase, cytosolic involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:75,130,228...75,131,742
Ensembl chr17:75,130,225...75,131,757
JBrowse link
G NT5M 5',3'-nucleotidase, mitochondrial involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12234672) Ensembl
MGI
PMID:12234672 GO_REF:0000107 NCBI chr17:17,303,373...17,347,663
Ensembl chr17:17,303,335...17,347,663
JBrowse link
G UPB1 beta-ureidopropionase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:24,495,332...24,528,390
Ensembl chr22:24,494,107...24,528,390
JBrowse link
G UPP1 uridine phosphorylase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:48,088,704...48,108,736
Ensembl chr 7:48,088,628...48,108,736
JBrowse link
dUTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DUT deoxyuridine triphosphatase involved_in ISO
IBA
IEA
RGD
GO_Central
UniProt
InterPro
PMID:1315924 PMID:3032103 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 RGD:2300191 RGD:2301218 NCBI chr15:48,331,095...48,343,373
Ensembl chr15:48,331,011...48,343,373
JBrowse link
G LINC03106 long intergenic non-protein coding RNA 3106 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:26,066,675...26,118,408
Ensembl chr 9:26,066,675...26,118,408
JBrowse link
pyrimidine deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NT5C 5', 3'-nucleotidase, cytosolic involved_in IDA
IBA
IEA
(PMID:10681516) UniProt
GO_Central
TreeGrafter
PMID:10681516 GO_REF:0000033 GO_REF:0000118 NCBI chr17:75,130,228...75,131,742
Ensembl chr17:75,130,225...75,131,757
JBrowse link
G NT5M 5',3'-nucleotidase, mitochondrial involved_in TAS
IBA
(PMID:10899995) PINC
GO_Central
PMID:10899995 GO_REF:0000033 NCBI chr17:17,303,373...17,347,663
Ensembl chr17:17,303,335...17,347,663
JBrowse link
pyrimidine nucleotide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in IEA UniProt GO_REF:0000043 NCBI chr 2:27,217,369...27,243,943
Ensembl chr 2:27,217,369...27,243,943
JBrowse link
G CMPK1 cytidine/uridine monophosphate kinase 1 involved_in IEA UniProt
InterPro
GO_REF:0000002 GO_REF:0000043 GO_REF:0000104 NCBI chr 1:47,333,790...47,378,839
Ensembl chr 1:47,333,790...47,394,866
JBrowse link
G CMPK2 cytidine/uridine monophosphate kinase 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr 2:6,840,553...6,866,635
Ensembl chr 2:6,840,570...6,866,635
JBrowse link
G CTPS1 CTP synthase 1 involved_in IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000043 NCBI chr 1:40,979,696...41,012,565
Ensembl chr 1:40,979,300...41,012,565
JBrowse link
G CTPS2 CTP synthase 2 involved_in IEA UniProt
InterPro
GO_REF:0000002 GO_REF:0000043 NCBI chr  X:16,587,999...16,712,910
Ensembl chr  X:16,587,999...16,712,936
JBrowse link
G DHODH dihydroorotate dehydrogenase (quinone) involved_in IEA UniProt GO_REF:0000043 NCBI chr16:72,008,744...72,027,659
Ensembl chr16:72,008,588...72,027,664
JBrowse link
G PRPS1 phosphoribosyl pyrophosphate synthetase 1 involved_in NAS (PMID:17701896) UniProt PMID:17701896 NCBI chr  X:107,628,510...107,651,026
Ensembl chr  X:107,628,428...107,651,993
JBrowse link
G SLC4A7 solute carrier family 4 member 7 involved_in IMP (PMID:35772404) UniProt PMID:35772404 NCBI chr 3:27,372,723...27,484,384
Ensembl chr 3:27,372,723...27,484,420
JBrowse link
G UMPS uridine monophosphate synthetase involved_in IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000043 NCBI chr 3:124,730,452...124,749,273
Ensembl chr 3:124,730,433...124,749,273
JBrowse link
G ZBTB49 zinc finger and BTB domain containing 49 involved_in IEA UniProt GO_REF:0000043 NCBI chr 4:4,290,251...4,321,783
Ensembl chr 4:4,290,251...4,321,786
JBrowse link
pyrimidine ribonucleotide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AK5 adenylate kinase 5 involved_in TAS (PMID:10215863) PINC PMID:10215863 NCBI chr 1:77,282,019...77,559,966
Ensembl chr 1:77,282,019...77,559,966
JBrowse link
G CMPK1 cytidine/uridine monophosphate kinase 1 involved_in TAS (PMID:10462544) PINC PMID:10462544 NCBI chr 1:47,333,790...47,378,839
Ensembl chr 1:47,333,790...47,394,866
JBrowse link
G DHODH dihydroorotate dehydrogenase (quinone) involved_in IBA GO_Central GO_REF:0000033 NCBI chr16:72,008,744...72,027,659
Ensembl chr16:72,008,588...72,027,664
JBrowse link
UDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in IDA (PMID:25678555) MGI PMID:25678555 NCBI chr 2:27,217,369...27,243,943
Ensembl chr 2:27,217,369...27,243,943
JBrowse link
G CMPK1 cytidine/uridine monophosphate kinase 1 involved_in ISO
IBA
IDA
(PMID:11912132) RGD
GO_Central
MGI
PMID:3010881 PMID:11912132 GO_REF:0000033 RGD:5133253 NCBI chr 1:47,333,790...47,378,839
Ensembl chr 1:47,333,790...47,394,866
JBrowse link
G DHODH dihydroorotate dehydrogenase (quinone) involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:72,008,744...72,027,659
Ensembl chr16:72,008,588...72,027,664
JBrowse link
G UMPS uridine monophosphate synthetase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:124,730,452...124,749,273
Ensembl chr 3:124,730,433...124,749,273
JBrowse link
UDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in IDA
IEA
IBA
(PMID:10858452), (PMID:9556635) UniProt
TreeGrafter
GO_Central
PMID:9556635 PMID:10858452 GO_REF:0000033 GO_REF:0000118 NCBI chr 8:23,429,162...23,457,647
Ensembl chr 8:23,385,783...23,457,695
JBrowse link
G ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 (inactive) involved_in ISS UniProt GO_REF:0000024 NCBI chr14:73,955,329...74,019,288
Ensembl chr14:73,958,010...74,019,399
JBrowse link
G ENTPD7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:99,659,509...99,711,241
Ensembl chr10:99,659,509...99,711,241
JBrowse link
UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK1 cytidine/uridine monophosphate kinase 1 involved_in IEA GOC GO_REF:0000108 NCBI chr 1:47,333,790...47,378,839
Ensembl chr 1:47,333,790...47,394,866
JBrowse link
G UCK1 uridine-cytidine kinase 1 acts_upstream_of_or_within ISO (MGI:84399|PMID:8951040) GOC PMID:8951040 MGI:84399 NCBI chr 9:131,523,801...131,531,263
Ensembl chr 9:131,523,801...131,531,264
JBrowse link
G UMPS uridine monophosphate synthetase involved_in ISO
IEA
IBA
IDA
(PMID:11730338), (PMID:18184586), (PMID:6893554), (PMID:9042911) RGD
TreeGrafter
GO_Central
Ensembl
UniProt
PMID:6134725 PMID:6893554 PMID:9042911 PMID:11730338 PMID:18184586 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 RGD:5132277 NCBI chr 3:124,730,452...124,749,273
Ensembl chr 3:124,730,433...124,749,273
JBrowse link
G UPRT uracil phosphoribosyltransferase homolog involved_in ISO
IEA
RGD
Ensembl
PMID:1476792 GO_REF:0000107 RGD:5132591 NCBI chr  X:75,156,369...75,304,897
Ensembl chr  X:75,156,388...75,304,885
JBrowse link
UMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:97,077,743...97,921,059
Ensembl chr 1:97,077,743...97,995,000
JBrowse link
G DPYS dihydropyrimidinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:104,379,431...104,467,055
Ensembl chr 8:104,330,324...104,467,055
JBrowse link
G NT5C 5', 3'-nucleotidase, cytosolic involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:75,130,228...75,131,742
Ensembl chr17:75,130,225...75,131,757
JBrowse link
G UPB1 beta-ureidopropionase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:24,495,332...24,528,390
Ensembl chr22:24,494,107...24,528,390
JBrowse link
G UPP1 uridine phosphorylase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:48,088,704...48,108,736
Ensembl chr 7:48,088,628...48,108,736
JBrowse link
G UPP2 uridine phosphorylase 2 involved_in ISO (PMID:14715930) MGI PMID:14715930 NCBI chr 2:157,995,179...158,136,154
Ensembl chr 2:157,876,679...158,136,154
JBrowse link
UMP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDA cytidine deaminase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:20,589,097...20,618,903
Ensembl chr 1:20,589,086...20,618,903
JBrowse link
G UCK1 uridine-cytidine kinase 1 involved_in IEA
IDA
(PMID:11306702) UniProt PMID:11306702 GO_REF:0000041 NCBI chr 9:131,523,801...131,531,263
Ensembl chr 9:131,523,801...131,531,264
JBrowse link
G UCK2 uridine-cytidine kinase 2 involved_in IEA
IDA
(PMID:11306702), (PMID:27239701) UniProt
MGI
PMID:11306702 PMID:27239701 GO_REF:0000041 NCBI chr 1:165,827,614...165,911,618
Ensembl chr 1:165,827,614...165,911,618
JBrowse link
G UCKL1 uridine-cytidine kinase 1 like 1 involved_in IEA UniProt GO_REF:0000041 NCBI chr20:63,939,829...63,956,416
Ensembl chr20:63,939,829...63,956,416
JBrowse link
G UPP1 uridine phosphorylase 1 involved_in IEA UniProt
Ensembl
GO_REF:0000041 GO_REF:0000107 NCBI chr 7:48,088,704...48,108,736
Ensembl chr 7:48,088,628...48,108,736
JBrowse link
G UPP2 uridine phosphorylase 2 involved_in IEA UniProt GO_REF:0000041 NCBI chr 2:157,995,179...158,136,154
Ensembl chr 2:157,876,679...158,136,154
JBrowse link
UTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in ISO
IEA
IBA
RGD
TreeGrafter
GO_Central
Ensembl
PMID:10659854 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 RGD:2303528 NCBI chr 2:27,217,369...27,243,943
Ensembl chr 2:27,217,369...27,243,943
JBrowse link
G NME1 NME/NM23 nucleoside diphosphate kinase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr17:51,153,559...51,162,168
Ensembl chr17:51,153,559...51,162,428
JBrowse link
G NME1-NME2 NME1-NME2 readthrough involved_in IEA InterPro GO_REF:0000002 NCBI chr17:51,153,559...51,171,744
Ensembl chr17:51,153,590...51,171,744
JBrowse link
G NME2 NME/NM23 nucleoside diphosphate kinase 2 involved_in ISO
IEA
RGD
InterPro
PMID:1316151 GO_REF:0000002 RGD:729254 NCBI chr17:51,165,536...51,171,744
Ensembl chr17:51,165,435...51,171,744
JBrowse link
G NME2P1 NME2 pseudogene 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr12:120,282,218...120,282,856
Ensembl chr12:120,282,303...120,282,716
JBrowse link
G NME3 NME/NM23 nucleoside diphosphate kinase 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr16:1,770,320...1,771,543
Ensembl chr16:1,770,320...1,771,561
JBrowse link
G NME4 NME/NM23 nucleoside diphosphate kinase 4 involved_in IEA InterPro GO_REF:0000002 NCBI chr16:396,729...400,754
Ensembl chr16:396,725...410,367
JBrowse link
G NME5 NME/NM23 family member 5 involved_in IEA InterPro GO_REF:0000002 NCBI chr 5:138,115,175...138,139,428
Ensembl chr 5:138,115,175...138,139,443
JBrowse link
G NME6 NME/NM23 nucleoside diphosphate kinase 6 involved_in IEA InterPro GO_REF:0000002 NCBI chr 3:48,288,402...48,301,367
Ensembl chr 3:48,290,722...48,301,685
JBrowse link
G NME7 NME/NM23 family member 7 involved_in IEA UniProt
InterPro
GO_REF:0000002 GO_REF:0000104 NCBI chr 1:169,132,531...169,367,797
Ensembl chr 1:169,132,531...169,367,948
JBrowse link
G NME9 NME/NM23 family member 9 involved_in IEA InterPro GO_REF:0000002 NCBI chr 3:138,261,436...138,329,851
Ensembl chr 3:138,261,437...138,329,886
JBrowse link
UTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENTPD7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in IDA (PMID:11278936) UniProt PMID:11278936 NCBI chr10:99,659,509...99,711,241
Ensembl chr10:99,659,509...99,711,241
JBrowse link
UTP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AK3 adenylate kinase 3 involved_in IDA (PMID:11485571) BHF-UCL PMID:11485571 NCBI chr 9:4,709,556...4,742,043
Ensembl chr 9:4,709,556...4,742,043
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19613
    metabolic process 12438
      organonitrogen compound metabolic process 5576
        pyrimidine-containing compound metabolic process 95
          pyrimidine nucleotide metabolic process 57
            pyrimidine deoxyribonucleotide metabolic process + 25
            pyrimidine nucleotide biosynthetic process + 35
            pyrimidine nucleotide catabolic process + 23
            pyrimidine nucleotide interconversion + 0
            pyrimidine ribonucleotide metabolic process + 34
Path 2
Term Annotations click to browse term
  biological_process 19613
    metabolic process 12438
      cellular metabolic process 10624
        phosphorus metabolic process 1986
          phosphate-containing compound metabolic process 1955
            nucleoside phosphate metabolic process 666
              nucleotide metabolic process 660
                pyrimidine nucleotide metabolic process 57
                  pyrimidine deoxyribonucleotide metabolic process + 25
                  pyrimidine nucleotide biosynthetic process + 35
                  pyrimidine nucleotide catabolic process + 23
                  pyrimidine nucleotide interconversion + 0
                  pyrimidine ribonucleotide metabolic process + 34
paths to the root