NEIL2 (nei like DNA glycosylase 2) - Rat Genome Database

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Gene: NEIL2 (nei like DNA glycosylase 2) Homo sapiens
Analyze
Symbol: NEIL2
Name: nei like DNA glycosylase 2
RGD ID: 1323805
HGNC Page HGNC:18956
Description: Predicted to enable DNA N-glycosylase activity and DNA-(apurinic or apyrimidinic site) endonuclease activity. Predicted to be involved in base-excision repair. Located in nucleoplasm.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: DNA glycosylase/AP lyase Neil2; DNA-(apurinic or apyrimidinic site) lyase Neil2; endonuclease 8-like 2; endonuclease VIII-like 2; FLJ31644; MGC2832; MGC4505; NEH2; nei endonuclease VIII-like 2; nei homolog 2; nei like 2; nei-like DNA glycosylase 2; nei-like protein 2; NEI2
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: LOC100419161  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38811,769,710 - 11,787,345 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl811,769,639 - 11,787,345 (+)EnsemblGRCh38hg38GRCh38
GRCh37811,627,219 - 11,644,854 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36811,664,666 - 11,682,263 (+)NCBINCBI36Build 36hg18NCBI36
Build 34811,664,665 - 11,682,263NCBI
Celera810,756,501 - 10,774,181 (+)NCBICelera
Cytogenetic Map8p23.1NCBI
HuRef810,558,132 - 10,575,813 (+)NCBIHuRef
CHM1_1811,692,655 - 11,710,334 (+)NCBICHM1_1
T2T-CHM13v2.087,952,965 - 7,970,597 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8125298   PMID:11076863   PMID:11230166   PMID:12097317   PMID:12200441   PMID:12477932   PMID:12509226   PMID:14522990   PMID:14702039   PMID:14734554   PMID:15175427   PMID:15339932  
PMID:15489334   PMID:15489336   PMID:16344560   PMID:16381901   PMID:16982218   PMID:17029639   PMID:17116430   PMID:17150535   PMID:17686777   PMID:18515411   PMID:18594018   PMID:18651651  
PMID:19322201   PMID:20175991   PMID:20496165   PMID:20522537   PMID:20534351   PMID:20819778   PMID:21507922   PMID:21873635   PMID:22130663   PMID:22199273   PMID:22497777   PMID:23942779  
PMID:24123395   PMID:24406253   PMID:24595271   PMID:24698998   PMID:25416956   PMID:25575562   PMID:26245904   PMID:26373042   PMID:26554163   PMID:26601495   PMID:26751644   PMID:26949251  
PMID:27004405   PMID:27042257   PMID:28575236   PMID:29793947   PMID:29872149   PMID:30945288   PMID:31253066   PMID:31784740   PMID:32198476   PMID:32296183   PMID:32518160   PMID:32846144  
PMID:33925271   PMID:33961781   PMID:34097065   PMID:34704236   PMID:34757057   PMID:35216329   PMID:37310399   PMID:37971311   PMID:38071370  


Genomics

Comparative Map Data
NEIL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38811,769,710 - 11,787,345 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl811,769,639 - 11,787,345 (+)EnsemblGRCh38hg38GRCh38
GRCh37811,627,219 - 11,644,854 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36811,664,666 - 11,682,263 (+)NCBINCBI36Build 36hg18NCBI36
Build 34811,664,665 - 11,682,263NCBI
Celera810,756,501 - 10,774,181 (+)NCBICelera
Cytogenetic Map8p23.1NCBI
HuRef810,558,132 - 10,575,813 (+)NCBIHuRef
CHM1_1811,692,655 - 11,710,334 (+)NCBICHM1_1
T2T-CHM13v2.087,952,965 - 7,970,597 (-)NCBIT2T-CHM13v2.0
Neil2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391463,419,888 - 63,431,604 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1463,419,892 - 63,431,305 (-)EnsemblGRCm39 Ensembl
GRCm381463,182,439 - 63,194,154 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1463,182,443 - 63,193,856 (-)EnsemblGRCm38mm10GRCm38
MGSCv371463,801,282 - 63,812,362 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361462,136,553 - 62,147,651 (-)NCBIMGSCv36mm8
Celera1460,946,177 - 60,957,258 (-)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1433.24NCBI
Neil2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81541,620,650 - 41,631,551 (-)NCBIGRCr8
mRatBN7.21537,444,676 - 37,454,863 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1537,445,381 - 37,454,863 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1539,298,146 - 39,307,624 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01540,448,953 - 40,458,431 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01538,906,012 - 38,915,494 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01546,371,780 - 46,382,730 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1546,372,485 - 46,381,967 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01550,136,574 - 50,147,493 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41542,458,573 - 42,468,055 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11542,474,275 - 42,483,755 (-)NCBI
Celera1537,129,707 - 37,139,189 (-)NCBICelera
Cytogenetic Map15p12NCBI
Neil2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540353,037,743 - 53,048,723 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540353,037,008 - 53,044,996 (+)NCBIChiLan1.0ChiLan1.0
NEIL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2728,236,906 - 28,254,781 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan184,263,264 - 4,281,014 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v087,415,540 - 7,433,270 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
NEIL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12526,102,652 - 26,117,418 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2526,103,111 - 26,117,544 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2526,759,198 - 26,773,955 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02526,256,928 - 26,271,720 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2526,255,873 - 26,271,718 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12526,203,051 - 26,224,786 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02526,106,578 - 26,121,344 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02526,258,078 - 26,272,833 (-)NCBIUU_Cfam_GSD_1.0
Neil2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049435,122,224 - 5,144,963 (-)NCBIHiC_Itri_2
NEIL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1414,945,135 - 14,966,291 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11414,945,129 - 14,966,305 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21416,133,865 - 16,154,327 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NEIL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.187,319,721 - 7,338,683 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl87,319,585 - 7,338,602 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605235,096,846 - 35,116,542 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Neil2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475825,325,480 - 25,333,233 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475825,324,115 - 25,334,009 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NEIL2
49 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 8p23.3-21.1(chr8:2475295-27504279)x1 copy number loss See cases [RCV000050297] Chr8:2475295..27504279 [GRCh38]
Chr8:2292235..27361796 [GRCh37]
Chr8:2121457..27417713 [NCBI36]
Chr8:8p23.3-21.1
pathogenic
GRCh38/hg38 8p23.1(chr8:11112581-11948451)x3 copy number gain See cases [RCV000050806] Chr8:11112581..11948451 [GRCh38]
Chr8:10970091..11805960 [GRCh37]
Chr8:11007501..11843369 [NCBI36]
Chr8:8p23.1
uncertain significance
GRCh38/hg38 8p23.1(chr8:8222339-12383643)x1 copy number loss See cases [RCV000050658] Chr8:8222339..12383643 [GRCh38]
Chr8:8079861..12241152 [GRCh37]
Chr8:8117271..12285523 [NCBI36]
Chr8:8p23.1
pathogenic
GRCh38/hg38 8p23.1(chr8:7411297-12182465)x3 copy number gain See cases [RCV000051192] Chr8:7411297..12182465 [GRCh38]
Chr8:7268819..12039974 [GRCh37]
Chr8:7256229..12077383 [NCBI36]
Chr8:8p23.1
pathogenic|uncertain significance
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145049449)x3 copy number gain See cases [RCV000051206] Chr8:241530..145049449 [GRCh38]
Chr8:191530..146274835 [GRCh37]
Chr8:181530..146245639 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8p23.1(chr8:9970431-11984392)x3 copy number gain See cases [RCV000052154] Chr8:9970431..11984392 [GRCh38]
Chr8:9827941..11841901 [GRCh37]
Chr8:9865351..11879310 [NCBI36]
Chr8:8p23.1
pathogenic|uncertain significance
GRCh38/hg38 8p23.1(chr8:7195664-12383643)x1 copy number loss See cases [RCV000053154] Chr8:7195664..12383643 [GRCh38]
Chr8:7053186..12241152 [GRCh37]
Chr8:7040596..12285523 [NCBI36]
Chr8:8p23.1
pathogenic
GRCh38/hg38 8p23.1(chr8:7234837-12514815)x1 copy number loss See cases [RCV000053165] Chr8:7234837..12514815 [GRCh38]
Chr8:7092359..12372324 [GRCh37]
Chr8:7079769..12416695 [NCBI36]
Chr8:8p23.1
pathogenic
GRCh38/hg38 8p23.1(chr8:7411097-12610175)x1 copy number loss See cases [RCV000053166] Chr8:7411097..12610175 [GRCh38]
Chr8:7268619..12467684 [GRCh37]
Chr8:7256029..12512055 [NCBI36]
Chr8:8p23.1
pathogenic
GRCh38/hg38 8p23.1(chr8:7411297-11961807)x1 copy number loss See cases [RCV000053167] Chr8:7411297..11961807 [GRCh38]
Chr8:7268819..11819316 [GRCh37]
Chr8:7256229..11856725 [NCBI36]
Chr8:8p23.1
pathogenic
GRCh38/hg38 8p23.1(chr8:7411297-12546553)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053168]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053168]|See cases [RCV000053168] Chr8:7411297..12546553 [GRCh38]
Chr8:7268819..12404062 [GRCh37]
Chr8:7256229..12448433 [NCBI36]
Chr8:8p23.1
pathogenic
GRCh37/hg19 8p23.1(chr8:8079861-12039974)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053169]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053169] Chr8:8079861..12039974 [GRCh37]
Chr8:8p23.1
pathogenic
GRCh38/hg38 8p23.1(chr8:8222139-12383784)x3 copy number gain See cases [RCV000053482] Chr8:8222139..12383784 [GRCh38]
Chr8:8079661..12241293 [GRCh37]
Chr8:8117071..12285664 [NCBI36]
Chr8:8p23.1
pathogenic|uncertain significance
GRCh38/hg38 8p23.1(chr8:8272908-12182621)x3 copy number gain See cases [RCV000053483] Chr8:8272908..12182621 [GRCh38]
Chr8:8130430..12040130 [GRCh37]
Chr8:8167840..12077539 [NCBI36]
Chr8:8p23.1
pathogenic|uncertain significance
GRCh38/hg38 8p23.1(chr8:8273108-11948451)x3 copy number gain Abnormality of the heart [RCV000053484]|See cases [RCV000053484] Chr8:8273108..11948451 [GRCh38]
Chr8:8130630..11805960 [GRCh37]
Chr8:8p23.1
pathogenic|uncertain significance
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145054634)x3 copy number gain See cases [RCV000053602] Chr8:241530..145054634 [GRCh38]
Chr8:191530..146280020 [GRCh37]
Chr8:181530..146250824 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8p23.1(chr8:8336212-11984392)x3 copy number gain See cases [RCV000053485] Chr8:8336212..11984392 [GRCh38]
Chr8:8193728..11841901 [GRCh37]
Chr8:8231138..11879310 [NCBI36]
Chr8:8p23.1
pathogenic|uncertain significance
GRCh38/hg38 8p23.1(chr8:8336212-11984392)x1 copy number loss See cases [RCV000053486] Chr8:8336212..11984392 [GRCh38]
Chr8:8193728..11841901 [GRCh37]
Chr8:8231138..11879310 [NCBI36]
Chr8:8p23.1
pathogenic
GRCh38/hg38 8p23.1(chr8:8336212-12021806)x3 copy number gain See cases [RCV000053489] Chr8:8336212..12021806 [GRCh38]
Chr8:8193728..11879315 [GRCh37]
Chr8:8231138..11916724 [NCBI36]
Chr8:8p23.1
pathogenic|uncertain significance
GRCh38/hg38 8p23.3-q24.3(chr8:244417-145054775)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053604]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053604]|See cases [RCV000053604] Chr8:244417..145054775 [GRCh38]
Chr8:194417..146280161 [GRCh37]
Chr8:184417..146250965 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8p23.3-22(chr8:241530-17678697)x3 copy number gain See cases [RCV000053603] Chr8:241530..17678697 [GRCh38]
Chr8:191530..17536206 [GRCh37]
Chr8:181530..17580486 [NCBI36]
Chr8:8p23.3-22
pathogenic
GRCh38/hg38 8p23.3-12(chr8:96310-30614703)x3 copy number gain See cases [RCV000053599] Chr8:96310..30614703 [GRCh38]
Chr8:46310..30472220 [GRCh37]
Chr8:36310..30591762 [NCBI36]
Chr8:8p23.3-12
pathogenic
GRCh38/hg38 8p23.3-23.1(chr8:96310-12021806)x3 copy number gain See cases [RCV000053600] Chr8:96310..12021806 [GRCh38]
Chr8:46310..11879315 [GRCh37]
Chr8:36310..11916724 [NCBI36]
Chr8:8p23.3-23.1
pathogenic
NM_001135746.1(NEIL2):c.761C>T (p.Ala254Val) single nucleotide variant Malignant melanoma [RCV000068113] Chr8:11786035 [GRCh38]
Chr8:11643544 [GRCh37]
Chr8:11680953 [NCBI36]
Chr8:8p23.1
not provided
GRCh38/hg38 8p23.1(chr8:8222339-12182465)x1 copy number loss See cases [RCV000053169] Chr8:8222339..12182465 [GRCh38]
Chr8:8079861..12039974 [GRCh37]
Chr8:8117271..12077383 [NCBI36]
Chr8:8p23.1
pathogenic|likely pathogenic|conflicting data from submitters
GRCh38/hg38 8p23.1(chr8:8273108-11948451)x3 copy number gain See cases [RCV000053484] Chr8:8273108..11948451 [GRCh38]
Chr8:8130630..11805960 [GRCh37]
Chr8:8168040..11843369 [NCBI36]
Chr8:8p23.1
pathogenic
GRCh38/hg38 8p23.1(chr8:7834379-12182465)x3 copy number gain See cases [RCV000134177] Chr8:7834379..12182465 [GRCh38]
Chr8:7691901..12039974 [GRCh37]
Chr8:7729311..12077383 [NCBI36]
Chr8:8p23.1
pathogenic|likely pathogenic
GRCh38/hg38 8p23.1(chr8:8545843-11814470)x1 copy number loss See cases [RCV000134092] Chr8:8545843..11814470 [GRCh38]
Chr8:8403353..11671979 [GRCh37]
Chr8:8440763..11709388 [NCBI36]
Chr8:8p23.1
pathogenic
GRCh38/hg38 8p23.1(chr8:8273108-12546553)x3 copy number gain See cases [RCV000134923] Chr8:8273108..12546553 [GRCh38]
Chr8:8130630..12404062 [GRCh37]
Chr8:8168040..12448433 [NCBI36]
Chr8:8p23.1
pathogenic
GRCh38/hg38 8p23.1(chr8:8273108-11948451)x1 copy number loss See cases [RCV000135749] Chr8:8273108..11948451 [GRCh38]
Chr8:8130630..11805960 [GRCh37]
Chr8:8168040..11843369 [NCBI36]
Chr8:8p23.1
pathogenic
GRCh38/hg38 8p23.1(chr8:8273108-12383643)x1 copy number loss See cases [RCV000135775] Chr8:8273108..12383643 [GRCh38]
Chr8:8130630..12241152 [GRCh37]
Chr8:8168040..12285523 [NCBI36]
Chr8:8p23.1
pathogenic
GRCh38/hg38 8p23.1(chr8:7311968-12546553)x3 copy number gain See cases [RCV000136522] Chr8:7311968..12546553 [GRCh38]
Chr8:7169490..12404062 [GRCh37]
Chr8:7156900..12448433 [NCBI36]
Chr8:8p23.1
pathogenic
GRCh38/hg38 8p23.1(chr8:7311968-12546553)x1 copy number loss See cases [RCV000136523] Chr8:7311968..12546553 [GRCh38]
Chr8:7169490..12404062 [GRCh37]
Chr8:7156900..12448433 [NCBI36]
Chr8:8p23.1
pathogenic
GRCh38/hg38 8p23.3-21.3(chr8:241530-23198398)x3 copy number gain See cases [RCV000135967] Chr8:241530..23198398 [GRCh38]
Chr8:191530..23055911 [GRCh37]
Chr8:181530..23111856 [NCBI36]
Chr8:8p23.3-21.3
pathogenic
GRCh38/hg38 8p23.3-21.2(chr8:241605-24656971)x3 copy number gain See cases [RCV000136026] Chr8:241605..24656971 [GRCh38]
Chr8:191605..24514484 [GRCh37]
Chr8:181605..24570374 [NCBI36]
Chr8:8p23.3-21.2
pathogenic
GRCh38/hg38 8p23.1(chr8:8253505-12610034)x1 copy number loss See cases [RCV000137505] Chr8:8253505..12610034 [GRCh38]
Chr8:8111027..12467543 [GRCh37]
Chr8:8148437..12511914 [NCBI36]
Chr8:8p23.1
pathogenic|likely benign
GRCh38/hg38 8p23.3-11.23(chr8:226452-38021728)x3 copy number gain See cases [RCV000137807] Chr8:226452..38021728 [GRCh38]
Chr8:176452..37879246 [GRCh37]
Chr8:166452..37998403 [NCBI36]
Chr8:8p23.3-11.23
pathogenic|likely pathogenic
GRCh38/hg38 8p23.3-23.1(chr8:226452-12712987)x3 copy number gain See cases [RCV000137984] Chr8:226452..12712987 [GRCh38]
Chr8:176452..12570496 [GRCh37]
Chr8:166452..12614867 [NCBI36]
Chr8:8p23.3-23.1
pathogenic
GRCh38/hg38 8p23.1(chr8:8222339-12050329)x3 copy number gain See cases [RCV000137864] Chr8:8222339..12050329 [GRCh38]
Chr8:8079861..11907838 [GRCh37]
Chr8:8117271..11945247 [NCBI36]
Chr8:8p23.1
likely pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241605-145054781)x3 copy number gain See cases [RCV000138643] Chr8:241605..145054781 [GRCh38]
Chr8:191605..146280167 [GRCh37]
Chr8:181605..146250971 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8p23.3-12(chr8:241605-31091074)x3 copy number gain See cases [RCV000138831] Chr8:241605..31091074 [GRCh38]
Chr8:191605..30948590 [GRCh37]
Chr8:181605..31068132 [NCBI36]
Chr8:8p23.3-12
pathogenic
GRCh38/hg38 8p23.1(chr8:7103661-12299882)x3 copy number gain See cases [RCV000138529] Chr8:7103661..12299882 [GRCh38]
Chr8:6961183..12157391 [GRCh37]
Chr8:6948593..12201760 [NCBI36]
Chr8:8p23.1
pathogenic
GRCh38/hg38 8p23.1(chr8:8253505-12003060)x1 copy number loss See cases [RCV000138559] Chr8:8253505..12003060 [GRCh38]
Chr8:8111027..11860569 [GRCh37]
Chr8:8148437..11897978 [NCBI36]
Chr8:8p23.1
pathogenic
GRCh38/hg38 8p23.1-11.22(chr8:7141697-38695546)x3 copy number gain See cases [RCV000139891] Chr8:7141697..38695546 [GRCh38]
Chr8:6999219..38553064 [GRCh37]
Chr8:6986629..38672221 [NCBI36]
Chr8:8p23.1-11.22
pathogenic
GRCh38/hg38 8p23.1(chr8:11773771-11821194)x1 copy number loss See cases [RCV000140250] Chr8:11773771..11821194 [GRCh38]
Chr8:11631280..11678703 [GRCh37]
Chr8:11668689..11716112 [NCBI36]
Chr8:8p23.1
likely benign
GRCh38/hg38 8p23.3-12(chr8:226452-34491890)x3 copy number gain See cases [RCV000141410] Chr8:226452..34491890 [GRCh38]
Chr8:176452..34349408 [GRCh37]
Chr8:166452..34468950 [NCBI36]
Chr8:8p23.3-12
pathogenic
GRCh38/hg38 8p23.3-22(chr8:226452-16280146)x3 copy number gain See cases [RCV000141418] Chr8:226452..16280146 [GRCh38]
Chr8:176452..16137655 [GRCh37]
Chr8:166452..16182026 [NCBI36]
Chr8:8p23.3-22
pathogenic
GRCh38/hg38 8p23.1(chr8:11440972-11984333)x3 copy number gain See cases [RCV000141378] Chr8:11440972..11984333 [GRCh38]
Chr8:11298481..11841842 [GRCh37]
Chr8:11335891..11879251 [NCBI36]
Chr8:8p23.1
pathogenic
GRCh38/hg38 8p23.1(chr8:11739235-11803434)x1 copy number loss See cases [RCV000140679] Chr8:11739235..11803434 [GRCh38]
Chr8:11596744..11660943 [GRCh37]
Chr8:11634153..11698352 [NCBI36]
Chr8:8p23.1
pathogenic
GRCh38/hg38 8p23.1(chr8:10510192-12003060)x3 copy number gain See cases [RCV000140847] Chr8:10510192..12003060 [GRCh38]
Chr8:10367702..11860569 [GRCh37]
Chr8:10405112..11897978 [NCBI36]
Chr8:8p23.1
uncertain significance
GRCh38/hg38 8p23.1(chr8:8222339-11984333)x1 copy number loss See cases [RCV000140886] Chr8:8222339..11984333 [GRCh38]
Chr8:8079861..11841842 [GRCh37]
Chr8:8117271..11879251 [NCBI36]
Chr8:8p23.1
pathogenic
GRCh38/hg38 8p23.1(chr8:8235647-12037723)x1 copy number loss See cases [RCV000141976] Chr8:8235647..12037723 [GRCh38]
Chr8:8093169..11895232 [GRCh37]
Chr8:8130579..11932641 [NCBI36]
Chr8:8p23.1
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:208048-145070385)x3 copy number gain See cases [RCV000141808] Chr8:208048..145070385 [GRCh38]
Chr8:158048..146295771 [GRCh37]
Chr8:148048..146266575 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8p23.1(chr8:11732785-11814529)x3 copy number gain See cases [RCV000142966] Chr8:11732785..11814529 [GRCh38]
Chr8:11590294..11672038 [GRCh37]
Chr8:11627703..11709447 [NCBI36]
Chr8:8p23.1
uncertain significance
GRCh38/hg38 8p23.3-q24.3(chr8:226452-145068712)x3 copy number gain See cases [RCV000142858] Chr8:226452..145068712 [GRCh38]
Chr8:176452..146294098 [GRCh37]
Chr8:166452..146264902 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8p23.1(chr8:8273108-12610034)x1 copy number loss See cases [RCV000142710] Chr8:8273108..12610034 [GRCh38]
Chr8:8130630..12467543 [GRCh37]
Chr8:8168040..12511914 [NCBI36]
Chr8:8p23.1
pathogenic
GRCh38/hg38 8p23.1(chr8:8235647-12077956)x1 copy number loss See cases [RCV000143356] Chr8:8235647..12077956 [GRCh38]
Chr8:8093169..11935465 [GRCh37]
Chr8:8130579..11972874 [NCBI36]
Chr8:8p23.1
pathogenic
GRCh38/hg38 8p23.1(chr8:8235544-12088347)x3 copy number gain See cases [RCV000143280] Chr8:8235544..12088347 [GRCh38]
Chr8:8093066..11945856 [GRCh37]
Chr8:8130476..11983265 [NCBI36]
Chr8:8p23.1
pathogenic
GRCh38/hg38 8p23.3-23.1(chr8:226452-12698554)x3 copy number gain See cases [RCV000143248] Chr8:226452..12698554 [GRCh38]
Chr8:176452..12556063 [GRCh37]
Chr8:166452..12600434 [NCBI36]
Chr8:8p23.3-23.1
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145054634)x3 copy number gain See cases [RCV000148092] Chr8:241530..145054634 [GRCh38]
Chr8:191530..146280020 [GRCh37]
Chr8:181530..146250824 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8p23.1(chr8:8222339-12182465)x1 copy number loss See cases [RCV000148286] Chr8:8222339..12182465 [GRCh38]
Chr8:8079861..12039974 [GRCh37]
Chr8:8117271..12077383 [NCBI36]
Chr8:8p23.1
pathogenic
GRCh38/hg38 8p23.2-21.1(chr8:2475295-27504279)x1 copy number loss See cases [RCV000148252] Chr8:2475295..27504279 [GRCh38]
Chr8:2292235..27361796 [GRCh37]
Chr8:2121457..27417713 [NCBI36]
Chr8:8p23.2-21.1
pathogenic
GRCh37/hg19 8p23.3-22(chr8:158991-13304906)x3 copy number gain See cases [RCV000240124] Chr8:158991..13304906 [GRCh37]
Chr8:8p23.3-22
pathogenic
GRCh37/hg19 8p23.1(chr8:8127723-11858461)x1 copy number loss See cases [RCV000203433] Chr8:8127723..11858461 [GRCh37]
Chr8:8p23.1
pathogenic
GRCh37/hg19 8p23.1(chr8:8131816-12249050)x1 copy number loss Premature ovarian failure [RCV000225350] Chr8:8131816..12249050 [GRCh37]
Chr8:8p23.1
pathogenic
GRCh37/hg19 8p23.1(chr8:10815348-11860230)x3 copy number gain See cases [RCV000239878] Chr8:10815348..11860230 [GRCh37]
Chr8:8p23.1
uncertain significance
GRCh37/hg19 8p23.3-23.1(chr8:164984-11860845)x3 copy number gain See cases [RCV000239409] Chr8:164984..11860845 [GRCh37]
Chr8:8p23.3-23.1
pathogenic
NM_145043.4(NEIL2):c.385del (p.Arg129fs) deletion not provided [RCV000308665] Chr8:11779844 [GRCh38]
Chr8:11637353 [GRCh37]
Chr8:8p23.1
uncertain significance
GRCh37/hg19 8p23.1(chr8:8093168-11898980) copy number gain Neurodevelopmental delay [RCV002280755] Chr8:8093168..11898980 [GRCh37]
Chr8:8p23.1
pathogenic
GRCh37/hg19 8p23.3-12(chr8:158048-30262760)x3 copy number gain See cases [RCV000449225] Chr8:158048..30262760 [GRCh37]
Chr8:8p23.3-12
pathogenic
GRCh37/hg19 8p23.1(chr8:8093169-11888779)x1 copy number loss See cases [RCV000446839] Chr8:8093169..11888779 [GRCh37]
Chr8:8p23.1
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158991-146280828)x3 copy number gain See cases [RCV000447507] Chr8:158991..146280828 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8p23.1(chr8:8093169-11845219)x3 copy number gain See cases [RCV000446314] Chr8:8093169..11845219 [GRCh37]
Chr8:8p23.1
pathogenic
GRCh37/hg19 8p23.1(chr8:11362682-11709476)x3 copy number gain See cases [RCV000445792] Chr8:11362682..11709476 [GRCh37]
Chr8:8p23.1
likely pathogenic
GRCh37/hg19 8p23.3-23.1(chr8:1166068-12570914)x3 copy number gain See cases [RCV000448692] Chr8:1166068..12570914 [GRCh37]
Chr8:8p23.3-23.1
pathogenic
GRCh37/hg19 8p23.3-22(chr8:158991-17536147)x4 copy number gain See cases [RCV000448695] Chr8:158991..17536147 [GRCh37]
Chr8:8p23.3-22
pathogenic
GRCh37/hg19 8p23.1(chr8:11640871-11651233)x1 copy number loss See cases [RCV000448799] Chr8:11640871..11651233 [GRCh37]
Chr8:8p23.1
likely benign
GRCh37/hg19 8p23.1(chr8:9144943-11945856)x3 copy number gain See cases [RCV000448829] Chr8:9144943..11945856 [GRCh37]
Chr8:8p23.1
likely pathogenic
GRCh37/hg19 8p23.3-11.1(chr8:158048-43786723)x3 copy number gain See cases [RCV000447909] Chr8:158048..43786723 [GRCh37]
Chr8:8p23.3-11.1
pathogenic
GRCh37/hg19 8p23.3-22(chr8:158048-13309069)x1 copy number loss See cases [RCV000510201] Chr8:158048..13309069 [GRCh37]
Chr8:8p23.3-22
likely pathogenic
GRCh37/hg19 8p23.1(chr8:10110508-11882401)x3 copy number gain See cases [RCV000510273] Chr8:10110508..11882401 [GRCh37]
Chr8:8p23.1
likely pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158049-146295771) copy number gain See cases [RCV000510234] Chr8:158049..146295771 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8p23.1(chr8:11608214-11683083)x1 copy number loss See cases [RCV000510752] Chr8:11608214..11683083 [GRCh37]
Chr8:8p23.1
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158049-146295771)x3 copy number gain See cases [RCV000511095] Chr8:158049..146295771 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
NM_145043.4(NEIL2):c.129G>C (p.Gln43His) single nucleotide variant not specified [RCV004332249] Chr8:11771576 [GRCh38]
Chr8:11629085 [GRCh37]
Chr8:8p23.1
uncertain significance
GRCh37/hg19 8p23.1(chr8:7053186-11805960)x3 copy number gain See cases [RCV000512636] Chr8:7053186..11805960 [GRCh37]
Chr8:7040596..11843369 [NCBI36]
Chr8:8p23.1
pathogenic
GRCh37/hg19 8p23.1(chr8:8093169-11881742)x1 copy number loss See cases [RCV000512227] Chr8:8093169..11881742 [GRCh37]
Chr8:8p23.1
pathogenic
GRCh37/hg19 8p23.3-22(chr8:168483-13147575)x1,2 copy number gain not provided [RCV000683037] Chr8:168483..13147575 [GRCh37]
Chr8:8p23.3-22
pathogenic
GRCh37/hg19 8p23.3-22(chr8:158048-13974319)x3 copy number gain not provided [RCV000683039] Chr8:158048..13974319 [GRCh37]
Chr8:8p23.3-22
pathogenic
GRCh37/hg19 8p23.3-21.2(chr8:1825200-24533193)x3 copy number gain not provided [RCV000683042] Chr8:1825200..24533193 [GRCh37]
Chr8:8p23.3-21.2
pathogenic
GRCh37/hg19 8p23.1-21.2(chr8:8770948-27079636)x3 copy number gain not provided [RCV000683041] Chr8:8770948..27079636 [GRCh37]
Chr8:8p23.1-21.2
pathogenic
GRCh37/hg19 8p23.1(chr8:8093065-11945855)x3 copy number gain not provided [RCV000683028] Chr8:8093065..11945855 [GRCh37]
Chr8:8p23.1
pathogenic
GRCh37/hg19 8p23.1(chr8:8093169-11935465)x1 copy number loss not provided [RCV000683027] Chr8:8093169..11935465 [GRCh37]
Chr8:8p23.1
pathogenic
GRCh37/hg19 8p23.3-22(chr8:158048-15423270)x3 copy number gain not provided [RCV000683040] Chr8:158048..15423270 [GRCh37]
Chr8:8p23.3-22
pathogenic
GRCh37/hg19 8p23.1(chr8:10647782-11898980)x1 copy number loss not provided [RCV000683007] Chr8:10647782..11898980 [GRCh37]
Chr8:8p23.1
pathogenic
GRCh37/hg19 8p23.1(chr8:6999219-11898980)x3 copy number gain not provided [RCV000683030] Chr8:6999219..11898980 [GRCh37]
Chr8:8p23.1
pathogenic
GRCh37/hg19 8p23.1(chr8:8119295-11765719)x3 copy number gain not provided [RCV000683025] Chr8:8119295..11765719 [GRCh37]
Chr8:8p23.1
pathogenic
GRCh37/hg19 8p23.1(chr8:8093169-11898980)x1 copy number loss not provided [RCV000683026] Chr8:8093169..11898980 [GRCh37]
Chr8:8p23.1
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:10213-146293414)x3 copy number gain not provided [RCV000747248] Chr8:10213..146293414 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:164984-146293414)x3 copy number gain not provided [RCV000747254] Chr8:164984..146293414 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8p23.1(chr8:8105359-11859851)x3 copy number gain not provided [RCV000747347] Chr8:8105359..11859851 [GRCh37]
Chr8:8p23.1
pathogenic
GRCh37/hg19 8p23.1(chr8:8111659-11898209)x3 copy number gain not provided [RCV000747348] Chr8:8111659..11898209 [GRCh37]
Chr8:8p23.1
pathogenic
NM_145043.4(NEIL2):c.*969A>G single nucleotide variant not provided [RCV001666606] Chr8:11787242 [GRCh38]
Chr8:11644751 [GRCh37]
Chr8:8p23.1
benign
NM_145043.4(NEIL2):c.910C>A (p.Pro304Thr) single nucleotide variant not provided [RCV000905766] Chr8:11786184 [GRCh38]
Chr8:11643693 [GRCh37]
Chr8:8p23.1
benign
NM_145043.4(NEIL2):c.205C>G (p.Pro69Ala) single nucleotide variant not provided [RCV000968619] Chr8:11779664 [GRCh38]
Chr8:11637173 [GRCh37]
Chr8:8p23.1
likely benign
NM_145043.4(NEIL2):c.307C>T (p.Arg103Trp) single nucleotide variant not provided [RCV000967079] Chr8:11779766 [GRCh38]
Chr8:11637275 [GRCh37]
Chr8:8p23.1
benign
NM_145043.4(NEIL2):c.114G>A (p.Gln38=) single nucleotide variant not provided [RCV000951276] Chr8:11771561 [GRCh38]
Chr8:11629070 [GRCh37]
Chr8:8p23.1
benign
GRCh37/hg19 8p23.3-22(chr8:194617-13947374) copy number gain not provided [RCV000767676] Chr8:194617..13947374 [GRCh37]
Chr8:8p23.3-22
pathogenic
GRCh37/hg19 8p23.1(chr8:8403375-11805960) copy number loss Tetralogy of Fallot [RCV000767642] Chr8:8403375..11805960 [GRCh37]
Chr8:8p23.1
pathogenic
NM_145043.4(NEIL2):c.420C>T (p.Ser140=) single nucleotide variant not provided [RCV000900336] Chr8:11779879 [GRCh38]
Chr8:11637388 [GRCh37]
Chr8:8p23.1
likely benign
GRCh37/hg19 8p23.1(chr8:8093169-11936001)x1 copy number loss not provided [RCV001006063] Chr8:8093169..11936001 [GRCh37]
Chr8:8p23.1
pathogenic
GRCh37/hg19 8p23.1(chr8:11641710-11793548)x1 copy number loss not provided [RCV001006075] Chr8:11641710..11793548 [GRCh37]
Chr8:8p23.1
likely benign
Single allele duplication Neurodevelopmental disorder [RCV000787445] Chr8:8112589..11967869 [GRCh37]
Chr8:8p23.1
likely pathogenic
GRCh37/hg19 8p23.1(chr8:8093065-11882913)x3 copy number gain not provided [RCV000848343] Chr8:8093065..11882913 [GRCh37]
Chr8:8p23.1
pathogenic
GRCh37/hg19 8p23.1(chr8:8093065-11945856)x3 copy number gain not provided [RCV000847864] Chr8:8093065..11945856 [GRCh37]
Chr8:8p23.1
pathogenic
GRCh37/hg19 8p23.1(chr8:8093169-11898980)x1 copy number loss not provided [RCV000849225] Chr8:8093169..11898980 [GRCh37]
Chr8:8p23.1
pathogenic
NM_145043.4(NEIL2):c.77G>C (p.Gly26Ala) single nucleotide variant High myopia [RCV000785709] Chr8:11771524 [GRCh38]
Chr8:11629033 [GRCh37]
Chr8:8p23.1
uncertain significance
GRCh37/hg19 8p23.1(chr8:8102723-11936107)x3 copy number gain not provided [RCV000847249] Chr8:8102723..11936107 [GRCh37]
Chr8:8p23.1
pathogenic
GRCh37/hg19 8p23.3-22(chr8:158048-14214722)x1 copy number loss not provided [RCV000847768] Chr8:158048..14214722 [GRCh37]
Chr8:8p23.3-22
pathogenic
GRCh37/hg19 8p23.1(chr8:8093169-11888779)x3 copy number gain not provided [RCV000848227] Chr8:8093169..11888779 [GRCh37]
Chr8:8p23.1
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158048-146295771)x3 copy number gain not provided [RCV000848478] Chr8:158048..146295771 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8p23.1(chr8:8093065-11881742)x3 copy number gain not provided [RCV001006062] Chr8:8093065..11881742 [GRCh37]
Chr8:8p23.1
pathogenic
GRCh37/hg19 8p23.1(chr8:8093065-11945856)x3 copy number gain not provided [RCV000846764] Chr8:8093065..11945856 [GRCh37]
Chr8:8p23.1
pathogenic
GRCh37/hg19 8p23.1(chr8:11632835-11682672)x1 copy number loss not provided [RCV000845983] Chr8:11632835..11682672 [GRCh37]
Chr8:8p23.1
uncertain significance
Single allele duplication Thoracic aortic aneurysm [RCV001751799] Chr8:11403560..11853760 [GRCh37]
Chr8:8p23.1
likely pathogenic
NM_145043.4(NEIL2):c.633C>T (p.Gly211=) single nucleotide variant not provided [RCV000888237] Chr8:11783344 [GRCh38]
Chr8:11640853 [GRCh37]
Chr8:8p23.1
benign
NM_145043.4(NEIL2):c.948G>A (p.Pro316=) single nucleotide variant not provided [RCV000888238] Chr8:11786222 [GRCh38]
Chr8:11643731 [GRCh37]
Chr8:8p23.1
benign
NM_145043.4(NEIL2):c.566T>A (p.Val189Glu) single nucleotide variant not specified [RCV004139126] Chr8:11783277 [GRCh38]
Chr8:11640786 [GRCh37]
Chr8:8p23.1
uncertain significance
GRCh37/hg19 8p23.3-22(chr8:158049-18936715)x1 copy number loss not provided [RCV002472557] Chr8:158049..18936715 [GRCh37]
Chr8:8p23.3-22
pathogenic
GRCh37/hg19 8p23.1(chr8:6999219-11895232)x3 copy number gain not provided [RCV001006060] Chr8:6999219..11895232 [GRCh37]
Chr8:8p23.1
pathogenic
GRCh37/hg19 8p23.1(chr8:7881478-11860845)x1 copy number loss See cases [RCV001195073] Chr8:7881478..11860845 [GRCh37]
Chr8:8p23.1
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158048-146295771) copy number gain Polydactyly [RCV002280629] Chr8:158048..146295771 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8p23.1(chr8:11147024-11945856)x1 copy number loss not provided [RCV001260026] Chr8:11147024..11945856 [GRCh37]
Chr8:8p23.1
pathogenic
GRCh37/hg19 8p23.3-11.1(chr8:176814-43396776) copy number gain Abnormal fetal cardiovascular morphology [RCV001291977] Chr8:176814..43396776 [GRCh37]
Chr8:8p23.3-11.1
pathogenic
GRCh37/hg19 8p23.1(chr8:11346831-11668949)x3 copy number gain not provided [RCV001829195] Chr8:11346831..11668949 [GRCh37]
Chr8:8p23.1
uncertain significance
NC_000008.10:g.(?_9912027)_(11710963_?)dup duplication not provided [RCV001928084] Chr8:9912027..11710963 [GRCh37]
Chr8:8p23.1
uncertain significance
GRCh37/hg19 8p23.3-23.1(chr8:158048-11936107)x3 copy number gain not provided [RCV001827598] Chr8:158048..11936107 [GRCh37]
Chr8:8p23.3-23.1
pathogenic
NC_000008.10:g.(?_9912027)_(11710963_?)del deletion not provided [RCV001990593] Chr8:9912027..11710963 [GRCh37]
Chr8:8p23.1
uncertain significance
Single allele complex 8p inverted duplication/deletion syndrome [RCV002280753] Chr8:158048..43019304 [GRCh37]
Chr8:8p23.3-11.21
pathogenic
Single allele complex See cases [RCV002292428] Chr8:6999114..11935023 [GRCh37]
Chr8:8p23.3-11.21
pathogenic
GRCh37/hg19 8p23.3-12(chr8:158048-30187456)x1 copy number loss See cases [RCV002286343] Chr8:158048..30187456 [GRCh37]
Chr8:8p23.3-12
pathogenic
GRCh37/hg19 8p23.1(chr8:8093066-12548732)x1 copy number loss not provided [RCV002472610] Chr8:8093066..12548732 [GRCh37]
Chr8:8p23.1
pathogenic
NM_145043.4(NEIL2):c.134C>G (p.Thr45Ser) single nucleotide variant not specified [RCV004145386] Chr8:11771581 [GRCh38]
Chr8:11629090 [GRCh37]
Chr8:8p23.1
uncertain significance
NM_145043.4(NEIL2):c.452A>C (p.Lys151Thr) single nucleotide variant not specified [RCV004076401] Chr8:11779911 [GRCh38]
Chr8:11637420 [GRCh37]
Chr8:8p23.1
uncertain significance
NM_145043.4(NEIL2):c.945C>G (p.Cys315Trp) single nucleotide variant not specified [RCV004144837] Chr8:11786219 [GRCh38]
Chr8:11643728 [GRCh37]
Chr8:8p23.1
uncertain significance
NM_145043.4(NEIL2):c.725G>A (p.Gly242Glu) single nucleotide variant not specified [RCV004169065] Chr8:11785999 [GRCh38]
Chr8:11643508 [GRCh37]
Chr8:8p23.1
uncertain significance
NM_145043.4(NEIL2):c.652T>C (p.Tyr218His) single nucleotide variant not specified [RCV004169367] Chr8:11783363 [GRCh38]
Chr8:11640872 [GRCh37]
Chr8:8p23.1
uncertain significance
NM_145043.4(NEIL2):c.475A>G (p.Arg159Gly) single nucleotide variant not specified [RCV004069671] Chr8:11779934 [GRCh38]
Chr8:11637443 [GRCh37]
Chr8:8p23.1
uncertain significance
NM_145043.4(NEIL2):c.608G>A (p.Arg203Gln) single nucleotide variant not specified [RCV004072879] Chr8:11783319 [GRCh38]
Chr8:11640828 [GRCh37]
Chr8:8p23.1
uncertain significance
NM_145043.4(NEIL2):c.745G>A (p.Gly249Ser) single nucleotide variant not specified [RCV004165337] Chr8:11786019 [GRCh38]
Chr8:11643528 [GRCh37]
Chr8:8p23.1
uncertain significance
NM_145043.4(NEIL2):c.947C>T (p.Pro316Leu) single nucleotide variant not specified [RCV004245456] Chr8:11786221 [GRCh38]
Chr8:11643730 [GRCh37]
Chr8:8p23.1
uncertain significance
NM_145043.4(NEIL2):c.716A>G (p.Tyr239Cys) single nucleotide variant not specified [RCV004140263] Chr8:11785990 [GRCh38]
Chr8:11643499 [GRCh37]
Chr8:8p23.1
uncertain significance
NM_145043.4(NEIL2):c.671G>C (p.Arg224Thr) single nucleotide variant not specified [RCV004101699] Chr8:11783382 [GRCh38]
Chr8:11640891 [GRCh37]
Chr8:8p23.1
uncertain significance
NM_145043.4(NEIL2):c.61C>G (p.Gln21Glu) single nucleotide variant not specified [RCV004252167] Chr8:11771508 [GRCh38]
Chr8:11629017 [GRCh37]
Chr8:8p23.1
uncertain significance
NM_145043.4(NEIL2):c.221C>T (p.Pro74Leu) single nucleotide variant not specified [RCV004330415] Chr8:11779680 [GRCh38]
Chr8:11637189 [GRCh37]
Chr8:8p23.1
likely benign
NM_145043.4(NEIL2):c.731A>G (p.His244Arg) single nucleotide variant not specified [RCV004260969] Chr8:11786005 [GRCh38]
Chr8:11643514 [GRCh37]
Chr8:8p23.1
uncertain significance
NM_145043.4(NEIL2):c.767G>T (p.Arg256Leu) single nucleotide variant not specified [RCV004290136] Chr8:11786041 [GRCh38]
Chr8:11643550 [GRCh37]
Chr8:8p23.1
uncertain significance
GRCh38/hg38 8p23.3-21.2(chr8:449893-23854904)x1 copy number loss Neurodevelopmental disorder [RCV003327729] Chr8:449893..23854904 [GRCh38]
Chr8:8p23.3-21.2
pathogenic
GRCh37/hg19 8p23.1(chr8:7080281-12045269)x3 copy number gain 8p23.1 duplication syndrome [RCV003329529] Chr8:7080281..12045269 [GRCh37]
Chr8:8p23.1
pathogenic
NM_145043.4(NEIL2):c.959C>A (p.Pro320His) single nucleotide variant not specified [RCV004340103] Chr8:11786233 [GRCh38]
Chr8:11643742 [GRCh37]
Chr8:8p23.1
uncertain significance
NM_145043.4(NEIL2):c.452A>T (p.Lys151Ile) single nucleotide variant not specified [RCV004349359] Chr8:11779911 [GRCh38]
Chr8:11637420 [GRCh37]
Chr8:8p23.1
uncertain significance
GRCh37/hg19 8p23.2-11.21(chr8:2201405-41723095)x3 copy number gain not provided [RCV003484713] Chr8:2201405..41723095 [GRCh37]
Chr8:8p23.2-11.21
pathogenic
GRCh37/hg19 8p23.1-22(chr8:8093169-14526969)x3 copy number gain not provided [RCV003484718] Chr8:8093169..14526969 [GRCh37]
Chr8:8p23.1-22
pathogenic
GRCh37/hg19 8p23.3-23.1(chr8:158049-11898696)x1 copy number loss not provided [RCV003482999] Chr8:158049..11898696 [GRCh37]
Chr8:8p23.3-23.1
pathogenic
NM_145043.4(NEIL2):c.15G>A (p.Pro5=) single nucleotide variant not provided [RCV003436739] Chr8:11771462 [GRCh38]
Chr8:11628971 [GRCh37]
Chr8:8p23.1
likely benign
GRCh37/hg19 8p23.1(chr8:10783690-11882401)x3 copy number gain not specified [RCV003986744] Chr8:10783690..11882401 [GRCh37]
Chr8:8p23.1
uncertain significance
GRCh37/hg19 8p23.3-q24.3(chr8:158048-146295771)x3 copy number gain not specified [RCV003986742] Chr8:158048..146295771 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8p23.3-11.21(chr8:158048-41600696)x3 copy number gain not specified [RCV003986756] Chr8:158048..41600696 [GRCh37]
Chr8:8p23.3-11.21
pathogenic
NM_145043.4(NEIL2):c.390G>T (p.Trp130Cys) single nucleotide variant not specified [RCV004485792] Chr8:11779849 [GRCh38]
Chr8:11637358 [GRCh37]
Chr8:8p23.1
uncertain significance
NM_145043.4(NEIL2):c.462G>T (p.Lys154Asn) single nucleotide variant not specified [RCV004485801] Chr8:11779921 [GRCh38]
Chr8:11637430 [GRCh37]
Chr8:8p23.1
uncertain significance
NM_145043.4(NEIL2):c.518G>A (p.Gly173Asp) single nucleotide variant not specified [RCV004485809] Chr8:11783229 [GRCh38]
Chr8:11640738 [GRCh37]
Chr8:8p23.1
uncertain significance
NM_145043.4(NEIL2):c.574C>G (p.Pro192Ala) single nucleotide variant not specified [RCV004485816] Chr8:11783285 [GRCh38]
Chr8:11640794 [GRCh37]
Chr8:8p23.1
uncertain significance
NM_145043.4(NEIL2):c.995C>G (p.Ser332Cys) single nucleotide variant not specified [RCV004485867] Chr8:11786269 [GRCh38]
Chr8:11643778 [GRCh37]
Chr8:8p23.1
uncertain significance
NM_145043.4(NEIL2):c.103G>A (p.Ala35Thr) single nucleotide variant not specified [RCV004485765] Chr8:11771550 [GRCh38]
Chr8:11629059 [GRCh37]
Chr8:8p23.1
uncertain significance
NM_145043.4(NEIL2):c.326C>T (p.Pro109Leu) single nucleotide variant not specified [RCV004485776] Chr8:11779785 [GRCh38]
Chr8:11637294 [GRCh37]
Chr8:8p23.1
uncertain significance
NM_145043.4(NEIL2):c.337G>T (p.Asp113Tyr) single nucleotide variant not specified [RCV004485785] Chr8:11779796 [GRCh38]
Chr8:11637305 [GRCh37]
Chr8:8p23.1
uncertain significance
NM_145043.4(NEIL2):c.368C>T (p.Pro123Leu) single nucleotide variant not specified [RCV004485789] Chr8:11779827 [GRCh38]
Chr8:11637336 [GRCh37]
Chr8:8p23.1
uncertain significance
NM_145043.4(NEIL2):c.397G>C (p.Val133Leu) single nucleotide variant not specified [RCV004485794] Chr8:11779856 [GRCh38]
Chr8:11637365 [GRCh37]
Chr8:8p23.1
uncertain significance
NM_145043.4(NEIL2):c.455C>T (p.Ala152Val) single nucleotide variant not specified [RCV004485798] Chr8:11779914 [GRCh38]
Chr8:11637423 [GRCh37]
Chr8:8p23.1
uncertain significance
NM_145043.4(NEIL2):c.509G>A (p.Gly170Asp) single nucleotide variant not specified [RCV004485807] Chr8:11783220 [GRCh38]
Chr8:11640729 [GRCh37]
Chr8:8p23.1
uncertain significance
NM_145043.4(NEIL2):c.984G>T (p.Gln328His) single nucleotide variant not specified [RCV004485860] Chr8:11786258 [GRCh38]
Chr8:11643767 [GRCh37]
Chr8:8p23.1
uncertain significance
GRCh37/hg19 8p23.3-22(chr8:158049-16225393)x3 copy number gain See cases [RCV004442825] Chr8:158049..16225393 [GRCh37]
Chr8:8p23.3-22
pathogenic
NM_145043.4(NEIL2):c.682G>A (p.Gly228Arg) single nucleotide variant not specified [RCV004485828] Chr8:11783393 [GRCh38]
Chr8:11640902 [GRCh37]
Chr8:8p23.1
uncertain significance
GRCh37/hg19 8p23.1(chr8:7153587-12245784)x3 copy number gain not provided [RCV004577466] Chr8:7153587..12245784 [GRCh37]
Chr8:8p23.1
pathogenic
NC_000008.10:g.(?_11351220)_(11710963_?)dup duplication Atrioventricular septal defect 4 [RCV004583284] Chr8:11351220..11710963 [GRCh37]
Chr8:8p23.1
uncertain significance
NM_145043.4(NEIL2):c.35A>G (p.His12Arg) single nucleotide variant not specified [RCV004641477] Chr8:11771482 [GRCh38]
Chr8:11628991 [GRCh37]
Chr8:8p23.1
likely benign
NM_145043.4(NEIL2):c.788A>G (p.His263Arg) single nucleotide variant not specified [RCV004641476] Chr8:11786062 [GRCh38]
Chr8:11643571 [GRCh37]
Chr8:8p23.1
uncertain significance
NM_145043.4(NEIL2):c.10G>A (p.Gly4Arg) single nucleotide variant not specified [RCV004654722] Chr8:11771457 [GRCh38]
Chr8:11628966 [GRCh37]
Chr8:8p23.1
uncertain significance
NM_145043.4(NEIL2):c.199A>G (p.Ser67Gly) single nucleotide variant not specified [RCV004654723] Chr8:11779658 [GRCh38]
Chr8:11637167 [GRCh37]
Chr8:8p23.1
uncertain significance
NM_145043.4(NEIL2):c.797A>C (p.Glu266Ala) single nucleotide variant not specified [RCV004654720] Chr8:11786071 [GRCh38]
Chr8:11643580 [GRCh37]
Chr8:8p23.1
uncertain significance
NM_145043.4(NEIL2):c.847A>C (p.Thr283Pro) single nucleotide variant not specified [RCV004654721] Chr8:11786121 [GRCh38]
Chr8:11643630 [GRCh37]
Chr8:8p23.1
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2604
Count of miRNA genes:739
Interacting mature miRNAs:844
Transcripts:ENST00000284503, ENST00000403422, ENST00000436750, ENST00000455213, ENST00000524741, ENST00000528113, ENST00000528323
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298482BP2_HBlood pressure QTL 2 (human)1.8Blood pressurediastolic8695325632953256Human
407061441GWAS710417_Hapolipoprotein A 1 measurement QTL GWAS710417 (human)4e-18apolipoprotein A 1 measurementblood apolipoprotein AI level (CMO:0000520)81177173211771733Human
407145601GWAS794577_Halcohol dependence QTL GWAS794577 (human)0.000002alcohol dependence81178640611786407Human
407114211GWAS763187_Htriglyceride measurement, alcohol consumption measurement QTL GWAS763187 (human)1e-10triglyceride measurement, alcohol consumption measurementethanol drink intake rate (CMO:0001407)81177501911775020Human
407073647GWAS722623_Htriglyceride measurement, alcohol drinking QTL GWAS722623 (human)2e-13triglyceride measurement, alcohol drinkingblood triglyceride level (CMO:0000118)81177501911775020Human
407248234GWAS897210_HBMI-adjusted waist-hip ratio QTL GWAS897210 (human)2e-09BMI-adjusted waist-hip ratio81177567911775680Human
406982829GWAS631805_Hsystolic blood pressure QTL GWAS631805 (human)8e-08systolic blood pressuresystolic blood pressure (CMO:0000004)81178136911781370Human
407278228GWAS927204_Htriglyceride measurement QTL GWAS927204 (human)0.0000004triglyceride measurementblood triglyceride level (CMO:0000118)81177501911775020Human
407027381GWAS676357_Hneutrophil count QTL GWAS676357 (human)0.000001neutrophil quantity (VT:0000222)blood neutrophil count (CMO:0000030)81178073511780736Human
407238428GWAS887404_Hgut microbiome measurement QTL GWAS887404 (human)3e-08gut microbiome measurement81177161011771611Human
407073465GWAS722441_Htriglyceride measurement, alcohol drinking QTL GWAS722441 (human)5e-12triglyceride measurement, alcohol drinkingblood triglyceride level (CMO:0000118)81177501911775020Human
407277180GWAS926156_Htriglyceride measurement QTL GWAS926156 (human)0.000007triglyceride measurementblood triglyceride level (CMO:0000118)81177501911775020Human
407189310GWAS838286_HBMI-adjusted waist-hip ratio QTL GWAS838286 (human)1e-09BMI-adjusted waist-hip ratio81177567911775680Human
407181689GWAS830665_HCholecystitis QTL GWAS830665 (human)4e-08Cholecystitis81177212811772129Human
407010398GWAS659374_HBMI-adjusted waist circumference QTL GWAS659374 (human)2e-08BMI-adjusted waist circumference81177567911775680Human
407050237GWAS699213_Hlysophosphatidylethanolamine 16:0 measurement QTL GWAS699213 (human)0.000006blood lipid amount (VT:0003949)81178389811783899Human
406966239GWAS615215_Hnicotine use QTL GWAS615215 (human)0.000003nicotine use81178640611786407Human
407015357GWAS664333_HCalcium channel blocker use measurement QTL GWAS664333 (human)6e-09Calcium channel blocker use measurement81177340611773407Human
407114971GWAS763947_Htriglyceride measurement, alcohol consumption measurement QTL GWAS763947 (human)1e-12triglyceride measurement, alcohol consumption measurementethanol drink intake rate (CMO:0001407)81177501911775020Human
406941982GWAS590958_Hocular sarcoidosis QTL GWAS590958 (human)0.0000006eye integrity trait (VT:0011107)81177942411779425Human

Markers in Region
Cda1jc12  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37811,644,687 - 11,644,770UniSTSGRCh37
GRCh374151,342,803 - 151,342,892UniSTSGRCh37
Build 364151,562,253 - 151,562,342RGDNCBI36
Celera810,774,014 - 10,774,097UniSTS
Celera4148,662,283 - 148,662,372RGD
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map4q31.3UniSTS
HuRef810,575,646 - 10,575,729UniSTS
HuRef4147,068,443 - 147,068,532UniSTS
G54043  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37811,644,680 - 11,644,816UniSTSGRCh37
Build 36811,682,089 - 11,682,225RGDNCBI36
Celera810,774,007 - 10,774,143RGD
Cytogenetic Map8p23.1UniSTS
HuRef810,575,639 - 10,575,775UniSTS
RH108  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37811,644,567 - 11,644,806UniSTSGRCh37
Build 36811,681,976 - 11,682,215RGDNCBI36
Celera810,773,894 - 10,774,133RGD
Cytogenetic Map8p23.1UniSTS
HuRef810,575,526 - 10,575,765UniSTS
GeneMap99-GB4 RH Map835.42UniSTS
A008R37  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37811,637,133 - 11,637,326UniSTSGRCh37
Build 36811,674,542 - 11,674,735RGDNCBI36
Celera810,766,460 - 10,766,653RGD
Cytogenetic Map8p23.1UniSTS
HuRef810,568,092 - 10,568,285UniSTS
GeneMap99-GB4 RH Map830.62UniSTS
NEIL2__6226  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37811,643,978 - 11,644,888UniSTSGRCh37
Build 36811,681,387 - 11,682,297RGDNCBI36
Celera810,773,305 - 10,774,215RGD
HuRef810,574,936 - 10,575,847UniSTS
IB46  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37811,644,567 - 11,644,768UniSTSGRCh37
Build 36811,681,976 - 11,682,177RGDNCBI36
Celera810,773,894 - 10,774,095RGD
Cytogenetic Map8p23.1UniSTS
HuRef810,575,526 - 10,575,727UniSTS
GeneMap99-GB4 RH Map850.26UniSTS
Whitehead-RH Map844.4UniSTS
NCBI RH Map892.4UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4974 1726 2351 6 624 1951 465 2270 7306 6472 53 3734 1 852 1744 1617 174 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_053043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001135746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001135747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001135748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001349439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001349440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001349441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001349442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_145043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_146180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_146181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_146182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB079070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC069185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC270285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK056206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK097389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK225837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK294224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY306127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC045822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX537529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA037395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA205315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA207321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB452586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000284503   ⟹   ENSP00000284503
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl811,769,710 - 11,787,345 (+)Ensembl
Ensembl Acc Id: ENST00000403422   ⟹   ENSP00000384070
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl811,769,709 - 11,787,345 (+)Ensembl
Ensembl Acc Id: ENST00000436750   ⟹   ENSP00000394023
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl811,769,639 - 11,787,345 (+)Ensembl
Ensembl Acc Id: ENST00000455213   ⟹   ENSP00000397538
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl811,769,699 - 11,787,340 (+)Ensembl
Ensembl Acc Id: ENST00000524741
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl811,782,612 - 11,786,656 (+)Ensembl
Ensembl Acc Id: ENST00000528113   ⟹   ENSP00000437004
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl811,769,710 - 11,786,097 (+)Ensembl
Ensembl Acc Id: ENST00000528323   ⟹   ENSP00000435657
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl811,769,710 - 11,786,374 (+)Ensembl
RefSeq Acc Id: NM_001135746   ⟹   NP_001129218
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38811,769,710 - 11,787,345 (+)NCBI
GRCh37811,627,172 - 11,644,854 (+)ENTREZGENE
HuRef810,558,132 - 10,575,813 (+)ENTREZGENE
CHM1_1811,692,655 - 11,710,334 (+)NCBI
T2T-CHM13v2.087,952,965 - 7,970,597 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001135747   ⟹   NP_001129219
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38811,769,710 - 11,787,345 (+)NCBI
GRCh37811,627,172 - 11,644,854 (+)ENTREZGENE
HuRef810,558,132 - 10,575,813 (+)ENTREZGENE
CHM1_1811,692,655 - 11,710,334 (+)NCBI
T2T-CHM13v2.087,952,965 - 7,970,597 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001135748   ⟹   NP_001129220
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38811,769,710 - 11,787,345 (+)NCBI
GRCh37811,627,172 - 11,644,854 (+)ENTREZGENE
HuRef810,558,132 - 10,575,813 (+)ENTREZGENE
CHM1_1811,692,655 - 11,710,334 (+)NCBI
T2T-CHM13v2.087,952,965 - 7,970,597 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001349439   ⟹   NP_001336368
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38811,769,710 - 11,787,345 (+)NCBI
T2T-CHM13v2.087,952,965 - 7,970,597 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001349440   ⟹   NP_001336369
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38811,769,710 - 11,787,345 (+)NCBI
T2T-CHM13v2.087,952,965 - 7,970,597 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001349441   ⟹   NP_001336370
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38811,769,710 - 11,787,345 (+)NCBI
T2T-CHM13v2.087,952,965 - 7,970,597 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001349442   ⟹   NP_001336371
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38811,769,710 - 11,787,345 (+)NCBI
T2T-CHM13v2.087,952,965 - 7,970,597 (-)NCBI
Sequence:
RefSeq Acc Id: NM_145043   ⟹   NP_659480
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38811,769,710 - 11,787,345 (+)NCBI
GRCh37811,627,172 - 11,644,854 (+)ENTREZGENE
Build 36811,664,666 - 11,682,263 (+)NCBI Archive
HuRef810,558,132 - 10,575,813 (+)ENTREZGENE
CHM1_1811,692,655 - 11,710,334 (+)NCBI
T2T-CHM13v2.087,952,965 - 7,970,597 (-)NCBI
Sequence:
RefSeq Acc Id: NR_146180
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38811,769,710 - 11,787,345 (+)NCBI
T2T-CHM13v2.087,952,965 - 7,970,597 (-)NCBI
Sequence:
RefSeq Acc Id: NR_146181
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38811,769,710 - 11,787,345 (+)NCBI
T2T-CHM13v2.087,952,965 - 7,970,597 (-)NCBI
Sequence:
RefSeq Acc Id: NR_146182
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38811,769,710 - 11,787,345 (+)NCBI
T2T-CHM13v2.087,952,965 - 7,970,597 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001129218 (Get FASTA)   NCBI Sequence Viewer  
  NP_001129219 (Get FASTA)   NCBI Sequence Viewer  
  NP_001129220 (Get FASTA)   NCBI Sequence Viewer  
  NP_001336368 (Get FASTA)   NCBI Sequence Viewer  
  NP_001336369 (Get FASTA)   NCBI Sequence Viewer  
  NP_001336370 (Get FASTA)   NCBI Sequence Viewer  
  NP_001336371 (Get FASTA)   NCBI Sequence Viewer  
  NP_659480 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH13952 (Get FASTA)   NCBI Sequence Viewer  
  AAH13964 (Get FASTA)   NCBI Sequence Viewer  
  AAH45822 (Get FASTA)   NCBI Sequence Viewer  
  AAP45052 (Get FASTA)   NCBI Sequence Viewer  
  BAB71120 (Get FASTA)   NCBI Sequence Viewer  
  BAC05030 (Get FASTA)   NCBI Sequence Viewer  
  BAC06478 (Get FASTA)   NCBI Sequence Viewer  
  BAG57528 (Get FASTA)   NCBI Sequence Viewer  
  CAD97774 (Get FASTA)   NCBI Sequence Viewer  
  EAW65623 (Get FASTA)   NCBI Sequence Viewer  
  EAW65624 (Get FASTA)   NCBI Sequence Viewer  
  EAW65625 (Get FASTA)   NCBI Sequence Viewer  
  EAW65626 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000284503
  ENSP00000284503.6
  ENSP00000384070
  ENSP00000384070.3
  ENSP00000394023
  ENSP00000394023.2
  ENSP00000397538
  ENSP00000397538.2
  ENSP00000435657
  ENSP00000435657.1
  ENSP00000437004.1
  ENSP00000518488.1
  ENSP00000518489.1
  ENSP00000518490.1
  ENSP00000518491.1
  ENSP00000518492.1
  ENSP00000518493.1
GenBank Protein Q969S2 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_659480   ⟸   NM_145043
- Peptide Label: isoform a
- UniProtKB: Q8N842 (UniProtKB/Swiss-Prot),   Q7Z3Q7 (UniProtKB/Swiss-Prot),   B4DFR7 (UniProtKB/Swiss-Prot),   Q8NG52 (UniProtKB/Swiss-Prot),   Q969S2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001129220   ⟸   NM_001135748
- Peptide Label: isoform c
- UniProtKB: Q969S2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001129218   ⟸   NM_001135746
- Peptide Label: isoform a
- UniProtKB: Q8N842 (UniProtKB/Swiss-Prot),   Q7Z3Q7 (UniProtKB/Swiss-Prot),   B4DFR7 (UniProtKB/Swiss-Prot),   Q8NG52 (UniProtKB/Swiss-Prot),   Q969S2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001129219   ⟸   NM_001135747
- Peptide Label: isoform b
- UniProtKB: Q969S2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001336369   ⟸   NM_001349440
- Peptide Label: isoform b
- Sequence:
RefSeq Acc Id: NP_001336370   ⟸   NM_001349441
- Peptide Label: isoform b
- Sequence:
RefSeq Acc Id: NP_001336371   ⟸   NM_001349442
- Peptide Label: isoform a
- UniProtKB: Q969S2 (UniProtKB/Swiss-Prot),   Q8N842 (UniProtKB/Swiss-Prot),   Q7Z3Q7 (UniProtKB/Swiss-Prot),   B4DFR7 (UniProtKB/Swiss-Prot),   Q8NG52 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001336368   ⟸   NM_001349439
- Peptide Label: isoform b
- Sequence:
Ensembl Acc Id: ENSP00000397538   ⟸   ENST00000455213
Ensembl Acc Id: ENSP00000284503   ⟸   ENST00000284503
Ensembl Acc Id: ENSP00000384070   ⟸   ENST00000403422
Ensembl Acc Id: ENSP00000435657   ⟸   ENST00000528323
Ensembl Acc Id: ENSP00000437004   ⟸   ENST00000528113
Ensembl Acc Id: ENSP00000394023   ⟸   ENST00000436750
Protein Domains
FPG-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q969S2-F1-model_v2 AlphaFold Q969S2 1-332 view protein structure

Promoters
RGD ID:6806898
Promoter ID:HG_KWN:60729
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_001135746,   NM_001135747,   NM_001135748,   NM_145043
Position:
Human AssemblyChrPosition (strand)Source
Build 36811,664,334 - 11,664,834 (+)MPROMDB
RGD ID:6806657
Promoter ID:HG_KWN:60730
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:ENST00000354579,   ENST00000382309
Position:
Human AssemblyChrPosition (strand)Source
Build 36811,665,411 - 11,665,911 (+)MPROMDB
RGD ID:7212651
Promoter ID:EPDNEW_H12071
Type:initiation region
Name:NEIL2_1
Description:nei like DNA glycosylase 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38811,769,718 - 11,769,778EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:18956 AgrOrtholog
COSMIC NEIL2 COSMIC
Ensembl Genes ENSG00000154328 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000292286 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000284503 ENTREZGENE
  ENST00000284503.7 UniProtKB/Swiss-Prot
  ENST00000403422 ENTREZGENE
  ENST00000403422.7 UniProtKB/Swiss-Prot
  ENST00000436750 ENTREZGENE
  ENST00000436750.7 UniProtKB/Swiss-Prot
  ENST00000455213 ENTREZGENE
  ENST00000455213.6 UniProtKB/Swiss-Prot
  ENST00000528113.5 UniProtKB/TrEMBL
  ENST00000528323 ENTREZGENE
  ENST00000528323.5 UniProtKB/Swiss-Prot
  ENST00000710791.1 UniProtKB/Swiss-Prot
  ENST00000710792.1 UniProtKB/Swiss-Prot
  ENST00000710793.1 UniProtKB/Swiss-Prot
  ENST00000710794.1 UniProtKB/Swiss-Prot
  ENST00000710795.1 UniProtKB/Swiss-Prot
  ENST00000710796.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.8.50 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000154328 GTEx
  ENSG00000292286 GTEx
HGNC ID HGNC:18956 ENTREZGENE
Human Proteome Map NEIL2 Human Proteome Map
InterPro DNA_glyclase/AP_lyase_DNA-bd UniProtKB/Swiss-Prot
  FPG_cat UniProtKB/Swiss-Prot
  Ribosomal_S13-like_H2TH UniProtKB/Swiss-Prot
  Znf_DNA_glyclase/AP_lyase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:252969 UniProtKB/Swiss-Prot
NCBI Gene 252969 ENTREZGENE
OMIM 608933 OMIM
PANTHER ENDONUCLEASE 8-LIKE 2 UniProtKB/Swiss-Prot
  FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE UniProtKB/Swiss-Prot
Pfam H2TH UniProtKB/Swiss-Prot
PharmGKB PA38769 PharmGKB
PROSITE FPG_CAT UniProtKB/Swiss-Prot
  ZF_FPG_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART H2TH UniProtKB/Swiss-Prot
Superfamily-SCOP SSF46946 UniProtKB/Swiss-Prot
UniProt B4DFR7 ENTREZGENE
  E9PPL4_HUMAN UniProtKB/TrEMBL
  NEIL2_HUMAN UniProtKB/Swiss-Prot
  Q3ZCR7_HUMAN UniProtKB/TrEMBL
  Q7Z3Q7 ENTREZGENE
  Q8N842 ENTREZGENE
  Q8NG52 ENTREZGENE
  Q969S2 ENTREZGENE
UniProt Secondary B4DFR7 UniProtKB/Swiss-Prot
  Q7Z3Q7 UniProtKB/Swiss-Prot
  Q8N842 UniProtKB/Swiss-Prot
  Q8NG52 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-26 NEIL2  nei like DNA glycosylase 2  NEIL2  nei-like DNA glycosylase 2  Symbol and/or name change 5135510 APPROVED
2015-06-30 NEIL2  nei-like DNA glycosylase 2  NEIL2  nei endonuclease VIII-like 2 (E. coli)  Symbol and/or name change 5135510 APPROVED
2011-07-27 NEIL2  nei endonuclease VIII-like 2 (E. coli)  NEIL2  nei like 2 (E. coli)  Symbol and/or name change 5135510 APPROVED