PDE8B (phosphodiesterase 8B) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: PDE8B (phosphodiesterase 8B) Homo sapiens
Analyze
Symbol: PDE8B
Name: phosphodiesterase 8B
RGD ID: 1348334
HGNC Page HGNC:8794
Description: Enables 3',5'-cyclic-AMP phosphodiesterase activity. Predicted to be involved in cAMP-mediated signaling and positive regulation of ERK1 and ERK2 cascade. Predicted to act upstream of or within several processes, including behavioral fear response; learning; and negative regulation of steroid hormone biosynthetic process. Predicted to be located in cytosol. Implicated in primary pigmented nodular adrenocortical disease 3.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: 3',5' cyclic nucleotide phosphodiesterase 8B; ADSD; cell proliferation-inducing gene 22 protein; FLJ11212; high affinity cAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8B; hsPDE8B; PPNAD3
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: AC068714.1  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38577,086,715 - 77,428,256 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl577,086,732 - 77,427,124 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl577,210,449 - 77,428,256 (+)EnsemblGRCh38hg38GRCh38
GRCh37576,382,540 - 76,724,081 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36576,542,462 - 76,758,999 (+)NCBINCBI36Build 36hg18NCBI36
Build 34576,542,461 - 76,758,982NCBI
Celera572,400,947 - 72,618,614 (+)NCBICelera
Cytogenetic Map5q13.3NCBI
HuRef571,713,174 - 71,930,868 (+)NCBIHuRef
CHM1_1575,940,448 - 76,157,815 (+)NCBICHM1_1
T2T-CHM13v2.0577,568,346 - 77,910,865 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 18 of 18 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PDE8BHumangenetic disease  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868
PDE8BHumangenetic disease  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVar 
PDE8BHumangenetic disease  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:28492532
PDE8BHumanHermansky-Pudlak syndrome 2  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Hermansky-Pudlak syndrome 2ClinVarPMID:16507770 more ...
PDE8BHumanNerve Degeneration  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Striatal DegenerationClinVar 
PDE8BHumanNerve Degeneration  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Striatal DegenerationClinVarPMID:25741868
PDE8BHumanNeurodevelopmental Disorders  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868
PDE8BHumanprimary pigmented nodular adrenocortical disease 3  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Pigmented nodular adrenocortical disease more ...ClinVarPMID:18272904
PDE8BHumanprimary pigmented nodular adrenocortical disease 3  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: PDE8B-related conditionClinVarPMID:24033266 more ...
PDE8BHumanprimary pigmented nodular adrenocortical disease 3  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: PDE8B-related conditionClinVarPMID:25741868 and PMID:28492532
PDE8BHumanprimary pigmented nodular adrenocortical disease 3  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: PDE8B-related conditionClinVarPMID:28492532
PDE8BHumanStriatal Degeneration, Autosomal Dominant 1  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Striatal degeneration and autosomal dominant 1ClinVarPMID:26475694
PDE8BHumanStriatal Degeneration, Autosomal Dominant 1  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Striatal degeneration and autosomal dominant 1ClinVar 
PDE8BHumanStriatal Degeneration, Autosomal Dominant 1  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Striatal degeneration and autosomal dominant 1ClinVarPMID:28492532
PDE8BHumanStriatal Degeneration, Autosomal Dominant 1  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Striatal degeneration and autosomal dominant 1ClinVarPMID:25741868
PDE8BHumanStriatal Degeneration, Autosomal Dominant 1  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Striatal degeneration and autosomal dominant 1ClinVarPMID:25741868 and PMID:28492532
PDE8BHumanStriatal Degeneration, Autosomal Dominant 1  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Striatal degeneration and autosomal dominant 1ClinVarPMID:24033266 more ...
PDE8BHumanStriatal Degeneration, Autosomal Dominant 1  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Striatal degeneration and autosomal dominant 1ClinVarPMID:26769607
1 to 18 of 18 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PDE8BHumanbasal ganglia disease  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:20085714
PDE8BHumancongenital adrenal hyperplasia  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:18272904
PDE8BHumanDysarthria  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:20085714
PDE8BHumanMuscle Rigidity  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:20085714
PDE8BHumanneurodegenerative disease  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:20085714
PDE8BHumanStriatal Degeneration, Autosomal Dominant  EXP 11554173CTD Direct Evidence: marker/mechanismCTD 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PDE8BHumanprimary pigmented nodular adrenocortical disease 3  IAGP 7240710 OMIM 
PDE8BHumanStriatal Degeneration, Autosomal Dominant 1  IAGP 7240710 OMIM 

1 to 20 of 74 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PDE8BHuman1,2-dichloroethane increases expressionISOPde8b (Mus musculus)6480464ethylene dichloride results in increased expression of PDE8B mRNACTDPMID:28960355
PDE8BHuman1,2-dimethylhydrazine decreases expressionISOPde8b (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of PDE8B mRNACTDPMID:22206623
PDE8BHuman2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of PDE8B mRNACTDPMID:20106945
PDE8BHuman2,3,7,8-tetrachlorodibenzodioxine multiple interactionsEXP 6480464[Endosulfan co-treated with Tetrachlorodibenzodioxin] results in decreased expression of PDE8B mRNACTDPMID:26159488
PDE8BHuman2,3,7,8-Tetrachlorodibenzofuran decreases expressionISOPde8b (Rattus norvegicus)64804642 more ...CTDPMID:32109520
PDE8BHuman3',5'-cyclic AMP multiple interactionsEXP 64804649-(2-hydroxy-3-nonyl)adenine inhibits the reaction [PDE8B protein results in increased metabolism of Cyclic AMP] more ...CTDPMID:12681444 and PMID:9784418
PDE8BHuman3',5'-cyclic AMP increases metabolic processingEXP 6480464PDE8B protein results in increased metabolism of Cyclic AMPCTDPMID:12681444
PDE8BHuman3',5'-cyclic AMP increases hydrolysisEXP 6480464PDE8B protein results in increased hydrolysis of Cyclic AMPCTDPMID:9784418
PDE8BHuman3-isobutyl-1-methyl-7H-xanthine multiple interactionsEXP 6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin] results in increased expression of PDE8B mRNACTDPMID:28628672
PDE8BHuman4,4'-diaminodiphenylmethane decreases expressionISOPde8b (Rattus norvegicus)64804644 and 4'-diaminodiphenylmethane results in decreased expression of PDE8B mRNACTDPMID:30723492
PDE8BHuman4,4'-sulfonyldiphenol increases expressionISOPde8b (Mus musculus)6480464bisphenol S results in increased expression of PDE8B mRNACTDPMID:30951980
PDE8BHuman4,4'-sulfonyldiphenol affects methylationISOPde8b (Mus musculus)6480464bisphenol S affects the methylation of PDE8B geneCTDPMID:31683443
PDE8BHuman4,4'-sulfonyldiphenol increases methylationISOPde8b (Mus musculus)6480464bisphenol S results in increased methylation of PDE8B promoterCTDPMID:33297965
PDE8BHuman4,4'-sulfonyldiphenol decreases methylationISOPde8b (Mus musculus)6480464bisphenol S results in decreased methylation of PDE8B exonCTDPMID:33297965
PDE8BHuman6-propyl-2-thiouracil decreases expressionISOPde8b (Rattus norvegicus)6480464Propylthiouracil results in decreased expression of PDE8B mRNACTDPMID:24780913
PDE8BHumanaflatoxin B1 affects expressionEXP 6480464Aflatoxin B1 affects the expression of PDE8B proteinCTDPMID:20106945
PDE8BHumanaflatoxin B1 decreases expressionEXP 6480464Aflatoxin B1 results in decreased expression of PDE8B mRNACTDPMID:32234424
PDE8BHumanaflatoxin B1 increases methylationEXP 6480464Aflatoxin B1 results in increased methylation of PDE8B intronCTDPMID:30157460
PDE8BHumanarsenite(3-) increases expressionISOPde8b (Mus musculus)6480464arsenite results in increased expression of PDE8B mRNACTDPMID:33053406
PDE8BHumanatrazine affects methylationISOPde8b (Rattus norvegicus)6480464Atrazine affects the methylation of PDE8B geneCTDPMID:28931070 and PMID:35440735

1 to 20 of 74 rows

Biological Process
1 to 13 of 13 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PDE8BHumanbehavioral fear response acts_upstream_of_or_withinIEAUniProtKB:E9Q4S1 and ensembl:ENSMUSP00000070465150520179 EnsemblGO_REF:0000107
PDE8BHumancAMP catabolic process involved_inIEAUniPathway:UPA00762150520179 UniProtGO_REF:0000041
PDE8BHumancAMP-mediated signaling involved_inIBACGD:CAL0000178266 and PANTHER:PTN001682918150520179 GO_CentralGO_REF:0000033
PDE8BHumannegative regulation of insulin secretion  ISOPde8b (Rattus norvegicus)9068941 RGDPMID:17991719 and REF_RGD_ID:2312519
PDE8BHumannegative regulation of insulin secretion involved_inIEAUniProtKB:A0A8I5ZTX5 and ensembl:ENSRNOP00000082132150520179 EnsemblGO_REF:0000107
PDE8BHumannegative regulation of insulin secretion involved in cellular response to glucose stimulus  ISOPde8b (Rattus norvegicus)9068941 RGDPMID:18706893 and REF_RGD_ID:2302857
PDE8BHumannegative regulation of insulin secretion involved in cellular response to glucose stimulus involved_inIEAUniProtKB:A0A8I5ZTX5 and ensembl:ENSRNOP00000082132150520179 EnsemblGO_REF:0000107
PDE8BHumannegative regulation of steroid hormone biosynthetic process acts_upstream_of_or_withinIEAUniProtKB:E9Q4S1 and ensembl:ENSMUSP00000070465150520179 EnsemblGO_REF:0000107
PDE8BHumanneuromuscular process controlling balance acts_upstream_of_or_withinIEAUniProtKB:E9Q4S1 and ensembl:ENSMUSP00000070465150520179 EnsemblGO_REF:0000107
PDE8BHumanoperant conditioning acts_upstream_of_or_withinIEAUniProtKB:E9Q4S1 and ensembl:ENSMUSP00000070465150520179 EnsemblGO_REF:0000107
PDE8BHumanpositive regulation of ERK1 and ERK2 cascade involved_inIBAFB:FBgn0266377 more ...150520179 GO_CentralGO_REF:0000033
PDE8BHumansignal transduction involved_inIEAInterPro:IPR002073 and InterPro:IPR036971150520179 InterProGO_REF:0000002
PDE8BHumanvisual learning acts_upstream_of_or_withinIEAUniProtKB:E9Q4S1 and ensembl:ENSMUSP00000070465150520179 EnsemblGO_REF:0000107
1 to 13 of 13 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PDE8BHumancytosol located_inTAS 150520179 ReactomeReactome:R-HSA-418553

Molecular Function
1 to 10 of 10 rows

  
1 to 10 of 10 rows

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PDE8BHumanprotein kinase A (PKA) signaling pathway   TAS 2312479 RGD 

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PDE8BHumanpurine metabolic pathway  IEA 6907045 KEGGhsa:00230
1 to 20 of 25 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PDE8BHumanAbnormality of movement  IAGP 8699517 HPOORPHA:228169
PDE8BHumanAdrenal hyperplasia  IAGP 8699517 HPOMIM:614190
PDE8BHumanAutosomal dominant inheritance  IAGP 8699517 HPOMIM:609161
PDE8BHumanAutosomal dominant inheritance  IAGP 8699517 HPOMIM:614190
PDE8BHumanBradykinesia  IAGP 8699517 HPOMIM:609161
PDE8BHumanBradykinesia  IAGP 8699517 HPOORPHA:228169
PDE8BHumanBrisk reflexes  IAGP 8699517 HPOMIM:609161
PDE8BHumanDegeneration of the striatum  IAGP 8699517 HPOMIM:609161
PDE8BHumanDysarthria  IAGP 8699517 HPOMIM:609161
PDE8BHumanDysarthria  IAGP 8699517 HPOORPHA:228169
PDE8BHumanDysdiadochokinesis  IAGP 8699517 HPOORPHA:228169
PDE8BHumanDysdiadochokinesis  IAGP 8699517 HPOMIM:609161
PDE8BHumanDysphagia  IAGP 8699517 HPOORPHA:228169
PDE8BHumanGait disturbance  IAGP 8699517 HPOORPHA:228169
PDE8BHumanGait disturbance  IAGP 8699517 HPOMIM:609161
PDE8BHumanHypokinesia  IAGP 8699517 HPOMIM:609161
PDE8BHumanIncreased circulating cortisol level  IAGP 8699517 HPOMIM:614190
PDE8BHumanLower limb hyperreflexia  IAGP 8699517 HPOMIM:609161
PDE8BHumanMiddle age onset  IAGP 8699517 HPOMIM:609161
PDE8BHumanRigidity  IAGP 8699517 HPOMIM:609161
1 to 20 of 25 rows

#
Reference Title
Reference Citation
1. Biochemistry and physiology of cyclic nucleotide phosphodiesterases: essential components in cyclic nucleotide signaling. Conti M and Beavo J, Annu Rev Biochem. 2007;76:481-511.
2. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
PMID:9784418   PMID:10737800   PMID:11502813   PMID:12372422   PMID:12477932   PMID:12681444   PMID:12895443   PMID:14702039   PMID:15144186   PMID:15210883   PMID:15489334   PMID:18431404  
PMID:18514160   PMID:19429701   PMID:19820008   PMID:20085714   PMID:20373981   PMID:20379614   PMID:21317282   PMID:21502949   PMID:21873635   PMID:22084153   PMID:22335482   PMID:22493691  
PMID:22494929   PMID:22781450   PMID:23237535   PMID:23272636   PMID:23408906   PMID:23941514   PMID:24497218   PMID:25436638   PMID:25822812   PMID:26673895   PMID:26769607   PMID:28382505  
PMID:28727628   PMID:29909144   PMID:31726290   PMID:32120844   PMID:33961781   PMID:34315543   PMID:36277728   PMID:36964488   PMID:38989284  



PDE8B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38577,086,715 - 77,428,256 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl577,086,732 - 77,427,124 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl577,210,449 - 77,428,256 (+)EnsemblGRCh38hg38GRCh38
GRCh37576,382,540 - 76,724,081 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36576,542,462 - 76,758,999 (+)NCBINCBI36Build 36hg18NCBI36
Build 34576,542,461 - 76,758,982NCBI
Celera572,400,947 - 72,618,614 (+)NCBICelera
Cytogenetic Map5q13.3NCBI
HuRef571,713,174 - 71,930,868 (+)NCBIHuRef
CHM1_1575,940,448 - 76,157,815 (+)NCBICHM1_1
T2T-CHM13v2.0577,568,346 - 77,910,865 (+)NCBIT2T-CHM13v2.0
Pde8b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391395,160,962 - 95,386,904 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1395,160,962 - 95,386,844 (-)EnsemblGRCm39 Ensembl
GRCm381395,024,105 - 95,250,401 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1395,024,454 - 95,250,336 (-)EnsemblGRCm38mm10GRCm38
MGSCv371395,794,060 - 96,020,259 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361396,125,209 - 96,356,676 (-)NCBIMGSCv36mm8
Celera1398,642,301 - 98,869,729 (-)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1349.22NCBI
Pde8b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8228,009,841 - 28,244,050 (-)NCBIGRCr8
mRatBN7.2226,275,117 - 26,479,725 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl226,276,635 - 26,509,209 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx233,312,032 - 33,416,252 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0231,412,277 - 31,516,497 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0226,230,581 - 26,334,824 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0224,718,548 - 24,955,533 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl224,719,976 - 24,923,128 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0243,877,817 - 44,112,405 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4225,352,725 - 25,469,209 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1225,273,093 - 25,389,578 (-)NCBI
Celera222,346,017 - 22,449,253 (-)NCBICelera
Cytogenetic Map2q12NCBI
Pde8b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542523,512,151 - 23,635,697 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542523,512,865 - 23,614,326 (-)NCBIChiLan1.0ChiLan1.0
PDE8B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2437,864,204 - 38,117,980 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1536,024,360 - 36,271,607 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0537,874,089 - 38,121,322 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1538,401,194 - 38,617,737 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl538,402,790 - 38,617,743 (-)Ensemblpanpan1.1panPan2
PDE8B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1329,289,867 - 29,432,557 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl329,291,549 - 29,432,542 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha330,529,732 - 30,795,035 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0329,211,247 - 29,477,045 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl329,212,086 - 29,476,198 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1329,145,547 - 29,411,320 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0329,126,263 - 29,366,339 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0329,457,265 - 29,761,295 (-)NCBIUU_Cfam_GSD_1.0
Pde8b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213185,408,778 - 185,646,290 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365495,212,834 - 5,448,515 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365495,212,693 - 5,450,195 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PDE8B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl285,949,174 - 86,323,795 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1286,007,190 - 86,323,796 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2287,703,295 - 87,929,545 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PDE8B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1471,425,722 - 71,668,747 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl471,456,017 - 71,668,437 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604920,170,235 - 20,506,517 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pde8b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248691,695,480 - 1,936,048 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248691,695,362 - 1,936,097 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in PDE8B
327 total Variants

1 to 10 of 319 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
NM_003719.5(PDE8B):c.914A>C (p.His305Pro) single nucleotide variant Pigmented nodular adrenocortical disease, primary, 3 [RCV000006762] Chr5:77349456 [GRCh38]
Chr5:76645281 [GRCh37]
Chr5:5q13.3
pathogenic
NM_003719.5(PDE8B):c.94_95delinsC (p.Val32fs) indel Autosomal dominant striatal neurodegeneration type 1 [RCV000006763] Chr5:77211019..77211020 [GRCh38]
Chr5:76506844..76506845 [GRCh37]
Chr5:5q13.3
pathogenic|likely pathogenic
GRCh38/hg38 5q13.3-22.1(chr5:74163186-110809453)x3 copy number gain See cases [RCV000051839] Chr5:74163186..110809453 [GRCh38]
Chr5:73459011..110145153 [GRCh37]
Chr5:73494767..110173052 [NCBI36]
Chr5:5q13.3-22.1
pathogenic
GRCh38/hg38 5q13.3-14.1(chr5:77018109-78190068)x1 copy number loss See cases [RCV000053473] Chr5:77018109..78190068 [GRCh38]
Chr5:76313934..77485892 [GRCh37]
Chr5:76349690..77521648 [NCBI36]
Chr5:5q13.3-14.1
pathogenic
NC_000005.10:g.77193035G>A single nucleotide variant Lung cancer [RCV000096181] Chr5:77193035 [GRCh38]
Chr5:76488860 [GRCh37]
Chr5:5q13.3
uncertain significance
GRCh37/hg19 5q13.3(chr5:76465177-76597426)x3 copy number gain See cases [RCV000449048] Chr5:76465177..76597426 [GRCh37]
Chr5:5q13.3
uncertain significance
NM_003719.5(PDE8B):c.304G>T (p.Glu102Ter) single nucleotide variant Autosomal dominant striatal neurodegeneration type 1 [RCV000224977] Chr5:77211229 [GRCh38]
Chr5:76507054 [GRCh37]
Chr5:5q13.3
pathogenic
NM_003719.5(PDE8B):c.79del (p.Arg27fs) deletion Autosomal dominant striatal neurodegeneration type 1 [RCV000224988] Chr5:77211001 [GRCh38]
Chr5:76506826 [GRCh37]
Chr5:5q13.3
pathogenic
NM_003719.5(PDE8B):c.2622A>G (p.Leu874=) single nucleotide variant Autosomal dominant striatal neurodegeneration type 1 [RCV000273933]|not provided [RCV000906757] Chr5:77426518 [GRCh38]
Chr5:76722343 [GRCh37]
Chr5:5q13.3
benign|likely benign
NM_003719.5(PDE8B):c.*64G>A single nucleotide variant Autosomal dominant striatal neurodegeneration type 1 [RCV001094968]|Striatal Degeneration [RCV000267169]|not provided [RCV004716394] Chr5:77426618 [GRCh38]
Chr5:76722443 [GRCh37]
Chr5:5q13.3
benign
1 to 10 of 319 rows

Predicted Target Of
Summary Value
Count of predictions:3697
Count of miRNA genes:1052
Interacting mature miRNAs:1269
Transcripts:ENST00000264917, ENST00000333194, ENST00000340978, ENST00000342343, ENST00000346042, ENST00000502945, ENST00000503963, ENST00000505283, ENST00000505926
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 333 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
406981698GWAS630674_Htype 2 diabetes mellitus QTL GWAS630674 (human)5e-29type 2 diabetes mellitus57713148677131487Human
406960192GWAS609168_HHbA1c measurement QTL GWAS609168 (human)9e-10HbA1c measurement57714972477149725Human
597029780GWAS1125854_Hwaist-hip ratio QTL GWAS1125854 (human)9e-10waist-hip ratiowaist to hip ratio (WHR) (CMO:0000020)57730319777303198Human
597587868GWAS1644728_Hdiabetic neuropathy QTL GWAS1644728 (human)3e-12diabetic neuropathy57713917977139180Human
597279643GWAS1375717_Hhypothyroidism QTL GWAS1375717 (human)9e-33hypothyroidism57724738477247385Human
406952517GWAS601493_Htype 2 diabetes mellitus QTL GWAS601493 (human)5e-11type 2 diabetes mellitus57713148677131487Human
406952516GWAS601492_Htype 2 diabetes mellitus QTL GWAS601492 (human)3e-10type 2 diabetes mellitus57713148677131487Human
597193117GWAS1289191_Htestosterone measurement QTL GWAS1289191 (human)8e-13testosterone measurementserum testosterone level (CMO:0000568)57719283077192831Human
596963217GWAS1082736_Hbody mass index QTL GWAS1082736 (human)4e-08body mass index57732091377320914Human
406980165GWAS629141_Hhemoglobin measurement QTL GWAS629141 (human)8e-18hemoglobin measurement57718400877184009Human

1 to 10 of 333 rows
D5S2041  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37576,673,752 - 76,673,977UniSTSGRCh37
Build 36576,709,508 - 76,709,733RGDNCBI36
Celera572,567,983 - 72,568,205RGD
Cytogenetic Map5q13.3UniSTS
HuRef571,880,208 - 71,880,435UniSTS
Marshfield Genetic Map581.95UniSTS
Marshfield Genetic Map581.95RGD
Genethon Genetic Map582.2UniSTS
deCODE Assembly Map591.88UniSTS
D5S1962  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37576,808,097 - 76,808,295UniSTSGRCh37
Build 36576,843,853 - 76,844,051RGDNCBI36
Celera572,702,620 - 72,702,818RGD
Cytogenetic Map5q13-q22UniSTS
Cytogenetic Map5q13.3UniSTS
HuRef572,014,889 - 72,015,087UniSTS
Marshfield Genetic Map581.95RGD
Marshfield Genetic Map581.95UniSTS
Genethon Genetic Map582.8UniSTS
deCODE Assembly Map592.08UniSTS
Stanford-G3 RH Map52790.0UniSTS
Whitehead-YAC Contig Map5 UniSTS
NCBI RH Map5363.9UniSTS
GeneMap99-G3 RH Map52785.0UniSTS
L28264  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37576,535,683 - 76,535,836UniSTSGRCh37
Build 36576,571,439 - 76,571,592RGDNCBI36
Celera572,429,913 - 72,430,066RGD
Cytogenetic Map5q13.3UniSTS
HuRef571,742,142 - 71,742,295UniSTS
SGC38064  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37576,723,769 - 76,724,031UniSTSGRCh37
Build 36576,759,525 - 76,759,787RGDNCBI36
Celera572,618,302 - 72,618,564RGD
Cytogenetic Map5q13.3UniSTS
HuRef571,930,556 - 71,930,818UniSTS
GeneMap99-GB4 RH Map5366.36UniSTS
Whitehead-RH Map5269.5UniSTS
WI-15757  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37576,722,509 - 76,722,636UniSTSGRCh37
Build 36576,758,265 - 76,758,392RGDNCBI36
Celera572,617,044 - 72,617,171RGD
Cytogenetic Map5q13.3UniSTS
HuRef571,929,298 - 71,929,425UniSTS
GeneMap99-GB4 RH Map5371.22UniSTS
Whitehead-RH Map5264.2UniSTS
RH91844  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37576,724,077 - 76,724,213UniSTSGRCh37
Build 36576,759,833 - 76,759,969RGDNCBI36
Celera572,618,610 - 72,618,746RGD
Cytogenetic Map5q13.3UniSTS
HuRef571,930,864 - 71,931,000UniSTS
GeneMap99-GB4 RH Map5368.59UniSTS
RH121596  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37576,632,651 - 76,632,981UniSTSGRCh37
Build 36576,668,407 - 76,668,737RGDNCBI36
Celera572,526,877 - 72,527,207RGD
Cytogenetic Map5q13.3UniSTS
HuRef571,839,106 - 71,839,436UniSTS
TNG Radiation Hybrid Map535755.0UniSTS
SHGC-147635  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37576,557,778 - 76,558,055UniSTSGRCh37
Build 36576,593,534 - 76,593,811RGDNCBI36
Celera572,452,008 - 72,452,285RGD
Cytogenetic Map5q13.3UniSTS
HuRef571,764,231 - 71,764,508UniSTS
TNG Radiation Hybrid Map535706.0UniSTS
SHGC-111880  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37576,515,044 - 76,515,350UniSTSGRCh37
Build 36576,550,800 - 76,551,106RGDNCBI36
Celera572,409,285 - 72,409,591RGD
Cytogenetic Map5q13.3UniSTS
HuRef571,721,512 - 71,721,818UniSTS
TNG Radiation Hybrid Map535692.0UniSTS
SHGC-107547  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37576,551,568 - 76,551,850UniSTSGRCh37
Build 36576,587,324 - 76,587,606RGDNCBI36
Celera572,445,798 - 72,446,080RGD
Cytogenetic Map5q13.3UniSTS
HuRef571,758,027 - 71,758,309UniSTS
TNG Radiation Hybrid Map535701.0UniSTS
WI-15505  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37576,722,722 - 76,722,847UniSTSGRCh37
Build 36576,758,478 - 76,758,603RGDNCBI36
Celera572,617,257 - 72,617,382RGD
Cytogenetic Map5q13.3UniSTS
HuRef571,929,511 - 71,929,636UniSTS
GeneMap99-GB4 RH Map5371.12UniSTS
Whitehead-RH Map5263.9UniSTS
NCBI RH Map5355.9UniSTS
D5S2464  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37576,587,583 - 76,587,781UniSTSGRCh37
GRCh375125,880,503 - 125,880,702UniSTSGRCh37
Build 365125,908,402 - 125,908,601RGDNCBI36
Celera572,481,813 - 72,482,011RGD
Cytogenetic Map5q14UniSTS
Cytogenetic Map5q13.3UniSTS
Cytogenetic Map5q31UniSTS
HuRef5121,071,206 - 121,071,405UniSTS
HuRef571,794,037 - 71,794,235UniSTS
GeneMap99-GB4 RH Map5370.82UniSTS
Whitehead-RH Map5270.0UniSTS
Whitehead-YAC Contig Map5 UniSTS
NCBI RH Map5363.9UniSTS
RH47147  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37576,587,455 - 76,587,556UniSTSGRCh37
Build 36576,623,211 - 76,623,312RGDNCBI36
Celera572,481,685 - 72,481,786RGD
Cytogenetic Map5q31UniSTS
Cytogenetic Map5q13.3UniSTS
Cytogenetic Map5q14UniSTS
HuRef571,793,909 - 71,794,010UniSTS
GeneMap99-GB4 RH Map5371.12UniSTS
D5S2596  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37576,587,528 - 76,587,670UniSTSGRCh37
GRCh375125,880,615 - 125,882,061UniSTSGRCh37
Build 36576,623,284 - 76,623,426RGDNCBI36
Celera572,481,758 - 72,481,900RGD
Cytogenetic Map5q31UniSTS
Cytogenetic Map5q14UniSTS
Cytogenetic Map5q13.3UniSTS
HuRef571,793,982 - 71,794,124UniSTS
HuRef5121,071,318 - 121,072,780UniSTS
Stanford-G3 RH Map52779.0UniSTS
GeneMap99-G3 RH Map52774.0UniSTS
RH45834  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37576,723,911 - 76,724,071UniSTSGRCh37
Build 36576,759,667 - 76,759,827RGDNCBI36
Celera572,618,444 - 72,618,604RGD
Cytogenetic Map5q13.3UniSTS
HuRef571,930,698 - 71,930,858UniSTS
GeneMap99-GB4 RH Map5368.29UniSTS
NCBI RH Map5363.9UniSTS
PDE8B_3075  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37576,722,317 - 76,722,921UniSTSGRCh37
Build 36576,758,073 - 76,758,677RGDNCBI36
Celera572,616,852 - 72,617,456RGD
HuRef571,929,106 - 71,929,710UniSTS
MARC_8167-8168:996688348:1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37576,703,245 - 76,704,747UniSTSGRCh37
Celera572,597,776 - 72,599,278UniSTS
HuRef571,910,010 - 71,911,512UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2427 2788 2248 4962 1720 2338 3 623 1915 464 2265 7241 6425 47 3728 1 841 1733 1604 172 1


1 to 30 of 63 rows
RefSeq Transcripts NG_023364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001029851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001029852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001029853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001029854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001349748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001349749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001349750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001349751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001349752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001349753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001376062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001376063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001376064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001376065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001376066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001376067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001376068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001376069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001376070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001376071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001376072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001376073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001376074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001376075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001414622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001414623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_003719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011543704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB085824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 63 rows

Ensembl Acc Id: ENST00000264917   ⟹   ENSP00000264917
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl577,210,680 - 77,428,256 (+)Ensembl
Ensembl Acc Id: ENST00000333194   ⟹   ENSP00000331336
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl577,210,926 - 77,426,633 (+)Ensembl
Ensembl Acc Id: ENST00000340978   ⟹   ENSP00000345446
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl577,210,881 - 77,427,418 (+)Ensembl
Ensembl Acc Id: ENST00000342343   ⟹   ENSP00000345646
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl577,210,926 - 77,426,633 (+)Ensembl
Ensembl Acc Id: ENST00000346042   ⟹   ENSP00000330428
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl577,210,881 - 77,427,418 (+)Ensembl
Ensembl Acc Id: ENST00000502945   ⟹   ENSP00000426200
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl577,213,944 - 77,331,459 (+)Ensembl
Ensembl Acc Id: ENST00000503963   ⟹   ENSP00000422861
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl577,325,693 - 77,351,118 (+)Ensembl
Ensembl Acc Id: ENST00000505283   ⟹   ENSP00000423461
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl577,410,424 - 77,428,195 (+)Ensembl
Ensembl Acc Id: ENST00000505926   ⟹   ENSP00000425720
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl577,210,449 - 77,331,473 (+)Ensembl
Ensembl Acc Id: ENST00000646262   ⟹   ENSP00000493971
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl577,086,732 - 77,427,124 (+)Ensembl
RefSeq Acc Id: NM_001029851   ⟹   NP_001025022
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38577,210,680 - 77,428,256 (+)NCBI
GRCh37576,476,082 - 76,724,081 (+)NCBI
Build 36576,542,462 - 76,758,999 (+)NCBI Archive
HuRef571,713,174 - 71,930,868 (+)ENTREZGENE
CHM1_1575,940,448 - 76,157,815 (+)NCBI
T2T-CHM13v2.0577,692,609 - 77,910,865 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001029852   ⟹   NP_001025023
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38577,210,680 - 77,428,256 (+)NCBI
GRCh37576,476,082 - 76,724,081 (+)NCBI
Build 36576,542,462 - 76,758,999 (+)NCBI Archive
HuRef571,713,174 - 71,930,868 (+)ENTREZGENE
CHM1_1575,940,448 - 76,157,815 (+)NCBI
T2T-CHM13v2.0577,692,609 - 77,910,865 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001029853   ⟹   NP_001025024
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38577,210,680 - 77,428,256 (+)NCBI
GRCh37576,476,082 - 76,724,081 (+)NCBI
Build 36576,542,462 - 76,758,999 (+)NCBI Archive
HuRef571,713,174 - 71,930,868 (+)ENTREZGENE
CHM1_1575,940,448 - 76,157,815 (+)NCBI
T2T-CHM13v2.0577,692,609 - 77,910,865 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001029854   ⟹   NP_001025025
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38577,210,680 - 77,428,256 (+)NCBI
GRCh37576,476,082 - 76,724,081 (+)NCBI
Build 36576,542,462 - 76,758,999 (+)NCBI Archive
HuRef571,713,174 - 71,930,868 (+)ENTREZGENE
CHM1_1575,940,448 - 76,157,815 (+)NCBI
T2T-CHM13v2.0577,692,609 - 77,910,865 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001349748   ⟹   NP_001336677
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38577,210,680 - 77,428,256 (+)NCBI
T2T-CHM13v2.0577,692,609 - 77,910,865 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001349749   ⟹   NP_001336678
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38577,210,680 - 77,428,256 (+)NCBI
T2T-CHM13v2.0577,692,609 - 77,910,865 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001349750   ⟹   NP_001336679
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38577,180,304 - 77,428,256 (+)NCBI
T2T-CHM13v2.0577,662,224 - 77,910,865 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001349751   ⟹   NP_001336680
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38577,210,680 - 77,428,256 (+)NCBI
T2T-CHM13v2.0577,692,609 - 77,910,865 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001349752   ⟹   NP_001336681
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38577,180,304 - 77,428,256 (+)NCBI
T2T-CHM13v2.0577,662,224 - 77,910,865 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001349753   ⟹   NP_001336682
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38577,209,652 - 77,428,256 (+)NCBI
T2T-CHM13v2.0577,691,581 - 77,910,865 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001376062   ⟹   NP_001362991
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38577,180,304 - 77,428,256 (+)NCBI
T2T-CHM13v2.0577,662,224 - 77,910,865 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001376063   ⟹   NP_001362992
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38577,210,680 - 77,428,256 (+)NCBI
T2T-CHM13v2.0577,692,609 - 77,910,865 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001376064   ⟹   NP_001362993
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38577,210,680 - 77,428,256 (+)NCBI
T2T-CHM13v2.0577,692,609 - 77,910,865 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001376065   ⟹   NP_001362994
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38577,210,680 - 77,428,256 (+)NCBI
T2T-CHM13v2.0577,692,609 - 77,910,865 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001376066   ⟹   NP_001362995
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38577,180,304 - 77,428,256 (+)NCBI
T2T-CHM13v2.0577,662,224 - 77,910,865 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001376067   ⟹   NP_001362996
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38577,209,652 - 77,428,256 (+)NCBI
T2T-CHM13v2.0577,691,581 - 77,910,865 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001376068   ⟹   NP_001362997
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38577,209,652 - 77,428,256 (+)NCBI
T2T-CHM13v2.0577,691,581 - 77,910,865 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001376069   ⟹   NP_001362998
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38577,180,304 - 77,428,256 (+)NCBI
T2T-CHM13v2.0577,662,224 - 77,910,865 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001376070   ⟹   NP_001362999
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38577,180,304 - 77,428,256 (+)NCBI
T2T-CHM13v2.0577,662,224 - 77,910,865 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001376071   ⟹   NP_001363000
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38577,180,304 - 77,428,256 (+)NCBI
T2T-CHM13v2.0577,662,224 - 77,910,865 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001376072   ⟹   NP_001363001
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38577,180,304 - 77,428,256 (+)NCBI
T2T-CHM13v2.0577,662,224 - 77,910,865 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001376073   ⟹   NP_001363002
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38577,180,304 - 77,428,256 (+)NCBI
T2T-CHM13v2.0577,662,224 - 77,910,865 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001376074   ⟹   NP_001363003
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38577,180,304 - 77,428,256 (+)NCBI
T2T-CHM13v2.0577,662,224 - 77,910,865 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001376075   ⟹   NP_001363004
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38577,209,652 - 77,428,256 (+)NCBI
T2T-CHM13v2.0577,691,581 - 77,910,865 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001414622   ⟹   NP_001401551
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38577,086,715 - 77,428,256 (+)NCBI
T2T-CHM13v2.0577,568,346 - 77,910,865 (+)NCBI
RefSeq Acc Id: NM_001414623   ⟹   NP_001401552
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38577,086,715 - 77,428,256 (+)NCBI
T2T-CHM13v2.0577,568,346 - 77,910,865 (+)NCBI
RefSeq Acc Id: NM_003719   ⟹   NP_003710
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38577,210,680 - 77,428,256 (+)NCBI
GRCh37576,476,082 - 76,724,081 (+)NCBI
Build 36576,542,462 - 76,758,999 (+)NCBI Archive
HuRef571,713,174 - 71,930,868 (+)ENTREZGENE
CHM1_1575,940,448 - 76,157,815 (+)NCBI
T2T-CHM13v2.0577,692,609 - 77,910,865 (+)NCBI
Sequence:
1 to 30 of 62 rows
Protein RefSeqs NP_001025022 (Get FASTA)   NCBI Sequence Viewer  
  NP_001025023 (Get FASTA)   NCBI Sequence Viewer  
  NP_001025024 (Get FASTA)   NCBI Sequence Viewer  
  NP_001025025 (Get FASTA)   NCBI Sequence Viewer  
  NP_001336677 (Get FASTA)   NCBI Sequence Viewer  
  NP_001336678 (Get FASTA)   NCBI Sequence Viewer  
  NP_001336679 (Get FASTA)   NCBI Sequence Viewer  
  NP_001336680 (Get FASTA)   NCBI Sequence Viewer  
  NP_001336681 (Get FASTA)   NCBI Sequence Viewer  
  NP_001336682 (Get FASTA)   NCBI Sequence Viewer  
  NP_001362991 (Get FASTA)   NCBI Sequence Viewer  
  NP_001362992 (Get FASTA)   NCBI Sequence Viewer  
  NP_001362993 (Get FASTA)   NCBI Sequence Viewer  
  NP_001362994 (Get FASTA)   NCBI Sequence Viewer  
  NP_001362995 (Get FASTA)   NCBI Sequence Viewer  
  NP_001362996 (Get FASTA)   NCBI Sequence Viewer  
  NP_001362997 (Get FASTA)   NCBI Sequence Viewer  
  NP_001362998 (Get FASTA)   NCBI Sequence Viewer  
  NP_001362999 (Get FASTA)   NCBI Sequence Viewer  
  NP_001363000 (Get FASTA)   NCBI Sequence Viewer  
  NP_001363001 (Get FASTA)   NCBI Sequence Viewer  
  NP_001363002 (Get FASTA)   NCBI Sequence Viewer  
  NP_001363003 (Get FASTA)   NCBI Sequence Viewer  
  NP_001363004 (Get FASTA)   NCBI Sequence Viewer  
  NP_001401551 (Get FASTA)   NCBI Sequence Viewer  
  NP_001401552 (Get FASTA)   NCBI Sequence Viewer  
  NP_003710 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC69564 (Get FASTA)   NCBI Sequence Viewer  
  AAH35144 (Get FASTA)   NCBI Sequence Viewer  
  AAH47627 (Get FASTA)   NCBI Sequence Viewer  
1 to 30 of 62 rows
1 to 5 of 37 rows
1 to 5 of 37 rows
RefSeq Acc Id: NP_003710   ⟸   NM_003719
- Peptide Label: isoform 1
- UniProtKB: Q8IUK0 (UniProtKB/Swiss-Prot),   Q8IUJ9 (UniProtKB/Swiss-Prot),   Q8IUJ8 (UniProtKB/Swiss-Prot),   Q8IUJ7 (UniProtKB/Swiss-Prot),   Q86XK8 (UniProtKB/Swiss-Prot),   Q5J7V7 (UniProtKB/Swiss-Prot),   Q8N3T2 (UniProtKB/Swiss-Prot),   O95263 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001025023   ⟸   NM_001029852
- Peptide Label: isoform 5
- UniProtKB: O95263 (UniProtKB/Swiss-Prot),   B3KN77 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001025025   ⟸   NM_001029854
- Peptide Label: isoform 2
- UniProtKB: O95263 (UniProtKB/Swiss-Prot),   B3KN77 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001025022   ⟸   NM_001029851
- Peptide Label: isoform 3
- UniProtKB: O95263 (UniProtKB/Swiss-Prot),   B3KN77 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001025024   ⟸   NM_001029853
- Peptide Label: isoform 4
- UniProtKB: O95263 (UniProtKB/Swiss-Prot),   B3KN77 (UniProtKB/TrEMBL)
- Sequence:
PAS   PDEase

Name Modeler Protein Id AA Range Protein Structure
AF-O95263-F1-model_v2 AlphaFold O95263 1-885 view protein structure

RGD ID:6803454
Promoter ID:HG_KWN:50518
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell
Transcripts:NM_001029851,   NM_001029852,   NM_001029853,   NM_001029854,   OTTHUMT00000220015
Position:
Human AssemblyChrPosition (strand)Source
Build 36576,542,216 - 76,542,716 (+)MPROMDB
RGD ID:6869940
Promoter ID:EPDNEW_H8135
Type:initiation region
Name:PDE8B_4
Description:phosphodiesterase 8B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H8136  EPDNEW_H8137  EPDNEW_H8138  EPDNEW_H8139  EPDNEW_H8140  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38577,139,279 - 77,139,339EPDNEW
RGD ID:6869942
Promoter ID:EPDNEW_H8136
Type:initiation region
Name:PDE8B_1
Description:phosphodiesterase 8B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H8135  EPDNEW_H8137  EPDNEW_H8138  EPDNEW_H8139  EPDNEW_H8140  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38577,180,304 - 77,180,364EPDNEW
RGD ID:6869944
Promoter ID:EPDNEW_H8137
Type:initiation region
Name:PDE8B_3
Description:phosphodiesterase 8B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H8135  EPDNEW_H8136  EPDNEW_H8138  EPDNEW_H8139  EPDNEW_H8140  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38577,210,957 - 77,211,017EPDNEW
RGD ID:6869946
Promoter ID:EPDNEW_H8138
Type:initiation region
Name:PDE8B_6
Description:phosphodiesterase 8B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H8135  EPDNEW_H8136  EPDNEW_H8137  EPDNEW_H8139  EPDNEW_H8140  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38577,211,205 - 77,211,265EPDNEW
RGD ID:6869948
Promoter ID:EPDNEW_H8139
Type:multiple initiation site
Name:PDE8B_5
Description:phosphodiesterase 8B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H8135  EPDNEW_H8136  EPDNEW_H8137  EPDNEW_H8138  EPDNEW_H8140  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38577,408,917 - 77,408,977EPDNEW
RGD ID:6869950
Promoter ID:EPDNEW_H8140
Type:multiple initiation site
Name:PDE8B_2
Description:phosphodiesterase 8B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H8135  EPDNEW_H8136  EPDNEW_H8137  EPDNEW_H8138  EPDNEW_H8139  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38577,418,425 - 77,418,485EPDNEW


1 to 40 of 66 rows
Database
Acc Id
Source(s)
COSMIC PDE8B COSMIC
Ensembl Genes ENSG00000113231 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSG00000284762 Ensembl
Ensembl Transcript ENST00000264917 ENTREZGENE
  ENST00000264917.10 UniProtKB/Swiss-Prot
  ENST00000333194 ENTREZGENE
  ENST00000333194.8 UniProtKB/Swiss-Prot
  ENST00000340978 ENTREZGENE
  ENST00000340978.7 UniProtKB/Swiss-Prot
  ENST00000342343 ENTREZGENE
  ENST00000342343.8 UniProtKB/Swiss-Prot
  ENST00000346042 ENTREZGENE
  ENST00000346042.7 UniProtKB/Swiss-Prot
  ENST00000505283.1 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.1300.10 UniProtKB/Swiss-Prot
  PAS domain UniProtKB/Swiss-Prot
GTEx ENSG00000113231 GTEx
  ENSG00000284762 GTEx
HGNC ID HGNC:8794 ENTREZGENE
Human Proteome Map PDE8B Human Proteome Map
InterPro HD/PDEase_dom UniProtKB/Swiss-Prot
  PAS UniProtKB/Swiss-Prot
  PAS-like_dom_sf UniProtKB/Swiss-Prot
  PDEase UniProtKB/Swiss-Prot
  PDEase_catalytic_dom UniProtKB/Swiss-Prot
  PDEase_catalytic_dom_sf UniProtKB/Swiss-Prot
  PDEase_CS UniProtKB/Swiss-Prot
  PDEase_PDE8 UniProtKB/Swiss-Prot
KEGG Report hsa:8622 UniProtKB/Swiss-Prot
NCBI Gene 8622 ENTREZGENE
OMIM 603390 OMIM
PANTHER CYCLIC NUCLEOTIDE PHOSPHODIESTERASE UniProtKB/Swiss-Prot
Pfam PAS_9 UniProtKB/Swiss-Prot
  PDE8 UniProtKB/Swiss-Prot
  PDEase_I UniProtKB/Swiss-Prot
PharmGKB PA33142 PharmGKB
PRINTS PDIESTERASE1 UniProtKB/Swiss-Prot
PROSITE PAS UniProtKB/Swiss-Prot
  PDEASE_I_1 UniProtKB/Swiss-Prot
  PDEASE_I_2 UniProtKB/Swiss-Prot
1 to 40 of 66 rows