GWAS627031_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS627031_H (heel bone mineral density, urate measurement QTL GWAS627031 (human)) Homo sapiens

Symbol: GWAS627031_H
Name: heel bone mineral density, urate measurement QTL GWAS627031 (human)
RGD ID: 406978055
Trait: heel bone mineral density, urate measurement
Measurement Type: blood uric acid level   (CMO:0000501)    
bone mineral density   (CMO:0001226)    
LOD Score: Not Available
P Value: 4.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38577,421,551 - 77,421,552RGD_MAPPER_PIPELINEGRCh38
GRCh37576,717,376 - 76,717,377RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS627031_HHumanblood uric acid level  IAGPrs116079251405850206Based on the EFO term IDGWAS_CATALOGPMID:34046847
GWAS627031_HHumanbone mineral density  IAGPrs116079251405850206Based on the EFO term IDGWAS_CATALOGPMID:34046847

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS627031_HHumanheel bone mineral density  IAGPrs116079251405850206 GWAS_CATALOGPMID:34046847
GWAS627031_HHumanurate measurement  IAGPrs116079251405850206 GWAS_CATALOGPMID:34046847
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1348334PDE8Bphosphodiesterase 8B57708671577428256Human

Position Markers

Peak: (rs116079251)
Human AssemblyChrPosition (strand)Source
GRCh38577,421,551 - 77,421,552RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406978055GWAS627031_Hheel bone mineral density, urate measurement QTL GWAS627031 (human)4e-08heel bone mineral density, urate measurementblood uric acid level (CMO:0000501)57742155177421552Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
None Available GCST012489 Heel bone mineral density x serum urate levels interaction 110,465 men, 127,334 women ? NR 4E-8 7.398 rs116079251 0.356994 heel bone mineral density (EFO:0009270)
urate measurement (EFO:0004531)
 PMID:34046847
Database Acc Id Source(s)
GWAS Catalog GCST012489 GWAS Catalog

RGD Curation Notes
Note Type Note Reference