GWAS1348412_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1348412_H (heel bone mineral density, urate measurement QTL GWAS1348412 (human)) Homo sapiens

Symbol: GWAS1348412_H
Name: heel bone mineral density, urate measurement QTL GWAS1348412 (human)
RGD ID: 597252338
Trait: heel bone mineral density, urate measurement
Measurement Type: blood uric acid level   (CMO:0000501)    
bone mineral density   (CMO:0001226)    
LOD Score: Not Available
P Value: 4.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38577,421,551 - 77,421,552RGD_MAPPER_PIPELINEGRCh38
GRCh37576,717,376 - 76,717,377RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1348412_HHumanblood uric acid level  IAGPrs116079251405850206 GWAS_CATALOGPMID:34046847
GWAS1348412_HHumanbone mineral density  IAGPrs116079251405850206 GWAS_CATALOGPMID:34046847

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1348412_HHumanheel bone mineral density  IAGPrs116079251405850206 GWAS_CATALOGPMID:34046847
GWAS1348412_HHumanurate measurement  IAGPrs116079251405850206 GWAS_CATALOGPMID:34046847

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1348334PDE8Bphosphodiesterase 8B57708671577428256Human


Peak: (rs116079251)
Human AssemblyChrPosition (strand)Source
GRCh38577,421,551 - 77,421,552RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
406978055GWAS627031_Hheel bone mineral density, urate measurement QTL GWAS627031 (human)4e-08heel bone mineral density, urate measurement57742155177421552Human
596962319GWAS1081838_Hheel bone mineral density, urate measurement QTL GWAS1081838 (human)4e-08heel bone mineral density, urate measurement57742155177421552Human
597252338GWAS1348412_Hheel bone mineral density, urate measurement QTL GWAS1348412 (human)4e-08heel bone mineral density, urate measurementblood uric acid level (CMO:0000501)57742155177421552Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1348412_H GCST012489 Heel bone mineral density x serum urate levels interaction 110,465 men, 127,334 women ? NR 4E-8 7.398 rs116079251 0.356994 heel bone mineral density (EFO:0009270)
urate measurement (EFO:0004531)
 PMID:34046847
Database
Acc Id
Source(s)
GWAS Catalog GCST012489 GWAS Catalog

Note Type Note Reference