GWAS599767_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS599767_H (hematocrit QTL GWAS599767 (human)) Homo sapiens

Symbol: GWAS599767_H
Name: hematocrit QTL GWAS599767 (human)
RGD ID: 406950791
Trait: hematocrit
LOD Score: Not Available
P Value: 1.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38577,184,008 - 77,184,009RGD_MAPPER_PIPELINEGRCh38
GRCh37576,479,833 - 76,479,834RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1348334PDE8Bphosphodiesterase 8B57708671577428256Human


Peak: (rs2928166)
Human AssemblyChrPosition (strand)Source
GRCh38577,184,008 - 77,184,009RGD_MAPPER_PIPELINE


1 to 10 of 11 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
596949542GWAS1069061_Hhematocrit QTL GWAS1069061 (human)1e-11hematocrithematocrit (CMO:0000037)57718400877184009Human
596962016GWAS1081535_Hhemoglobin measurement QTL GWAS1081535 (human)8e-18hemoglobin measurementhemoglobin measurement (CMO:0000508)57718400877184009Human
406950791GWAS599767_Hhematocrit QTL GWAS599767 (human)1e-11hematocrit57718400877184009Human
406979764GWAS628740_Hhematocrit QTL GWAS628740 (human)2e-18hematocrit57718400877184009Human
406980165GWAS629141_Hhemoglobin measurement QTL GWAS629141 (human)8e-18hemoglobin measurement57718400877184009Human
406981402GWAS630378_Hhemoglobin measurement QTL GWAS630378 (human)9e-13hemoglobin measurement57718400877184009Human
596961340GWAS1080859_Hhemoglobin measurement QTL GWAS1080859 (human)9e-13hemoglobin measurement57718400877184009Human
406970168GWAS619144_Hhemoglobin measurement QTL GWAS619144 (human)3e-12hemoglobin measurement57718400877184009Human
596961342GWAS1080861_Hhemoglobin measurement QTL GWAS1080861 (human)3e-12hemoglobin measurementhemoglobin measurement (CMO:0000508)57718400877184009Human
597045709GWAS1141783_Hhemoglobin measurement QTL GWAS1141783 (human)9e-13hemoglobin measurementhemoglobin measurement (CMO:0000508)57718400877184009Human

1 to 10 of 11 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1069061_H GCST004604 Hematocrit 173,039 European ancestry individuals C 0.1277 1E-11 11 rs2928166 0.03604599 hematocrit (EFO:0004348)
 PMID:27863252
GWAS1141783_H GCST010083 Hemoglobin levels 684,122 European ancestry individuals C NR 9E-13 12.046 rs2928166 0.024 hemoglobin measurement (EFO:0004509)
 PMID:32327693
GWAS1080861_H GCST004615 Hemoglobin concentration 172,925 European ancestry individuals C 0.1277 3E-12 11.523 rs2928166 0.03737965 hemoglobin measurement (EFO:0004509)
 PMID:27863252
GWAS1081480_H GCST90002383 Hematocrit 408,112 British individuals C 0.128237 2E-18 17.699 rs2928166 0.029044764 hematocrit (EFO:0004348)
 PMID:32888494
GWAS1081535_H GCST90002384 Hemoglobin 408,112 British individuals C 0.128202 8E-18 17.097 rs2928166 0.028547626 hemoglobin measurement (EFO:0004509)
 PMID:32888494
Database
Acc Id
Source(s)
GWAS Catalog GCST004604 GWAS Catalog

Note Type Note Reference