GWAS599767_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS599767_H (hematocrit QTL GWAS599767 (human)) Homo sapiens

Symbol: GWAS599767_H
Name: hematocrit QTL GWAS599767 (human)
RGD ID: 406950791
Trait: hematocrit
Measurement Type: hematocrit   (CMO:0000037)    
LOD Score: Not Available
P Value: 1.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38577,184,008 - 77,184,009RGD_MAPPER_PIPELINEGRCh38
GRCh37576,479,833 - 76,479,834RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS599767_HHumanhematocrit  IAGPrs2928166405850206Based on the EFO term IDGWAS_CATALOGPMID:27863252

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS599767_HHumanhematocrit  IAGPrs2928166405850206 GWAS_CATALOGPMID:27863252
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement
hematocrit  (IAGP)

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1348334PDE8Bphosphodiesterase 8B57708671577428256Human

Position Markers

Peak: (rs2928166)
Human AssemblyChrPosition (strand)Source
GRCh38577,184,008 - 77,184,009RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406950791GWAS599767_Hhematocrit QTL GWAS599767 (human)1e-11hematocrithematocrit (CMO:0000037)57718400877184009Human
406979764GWAS628740_Hhematocrit QTL GWAS628740 (human)2e-18hematocrithematocrit (CMO:0000037)57718400877184009Human
406980165GWAS629141_Hhemoglobin measurement QTL GWAS629141 (human)8e-18hemoglobin measurementhemoglobin measurement (CMO:0000508)57718400877184009Human
406981402GWAS630378_Hhemoglobin measurement QTL GWAS630378 (human)9e-13hemoglobin measurementhemoglobin measurement (CMO:0000508)57718400877184009Human
406970168GWAS619144_Hhemoglobin measurement QTL GWAS619144 (human)3e-12hemoglobin measurementhemoglobin measurement (CMO:0000508)57718400877184009Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
None Available GCST004604 Hematocrit 173,039 European ancestry individuals C 0.1277 1E-11 11 rs2928166 0.03604599 hematocrit (EFO:0004348)
 PMID:27863252
None Available GCST010083 Hemoglobin levels 684,122 European ancestry individuals C NR 9E-13 12.046 rs2928166 0.024 hemoglobin measurement (EFO:0004509)
 PMID:32327693
None Available GCST004615 Hemoglobin concentration 172,925 European ancestry individuals C 0.1277 3E-12 11.523 rs2928166 0.03737965 hemoglobin measurement (EFO:0004509)
 PMID:27863252
None Available GCST90002383 Hematocrit 408,112 British individuals C 0.128237 2E-18 17.699 rs2928166 0.029044764 hematocrit (EFO:0004348)
 PMID:32888494
None Available GCST90002384 Hemoglobin 408,112 British individuals C 0.128202 8E-18 17.097 rs2928166 0.028547626 hemoglobin measurement (EFO:0004509)
 PMID:32888494
Database Acc Id Source(s)
GWAS Catalog GCST004604 GWAS Catalog

RGD Curation Notes
Note Type Note Reference