GWAS1069386_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1069386_H (Sjogren syndrome QTL GWAS1069386 (human)) Homo sapiens

Symbol: GWAS1069386_H
Name: Sjogren syndrome QTL GWAS1069386 (human)
RGD ID: 596949867
Trait: Sjogren syndrome
LOD Score: Not Available
P Value: 8.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38577,324,177 - 77,324,178RGD_MAPPER_PIPELINEGRCh38
GRCh37576,620,002 - 76,620,003RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1348334PDE8Bphosphodiesterase 8B57708671577428256Human


Peak: (rs10474500)
Human AssemblyChrPosition (strand)Source
GRCh38577,324,177 - 77,324,178RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597062812GWAS1158886_HSjogren syndrome QTL GWAS1158886 (human)0.000008Sjogren syndrome57732417777324178Human
406939423GWAS588399_HSjogren syndrome QTL GWAS588399 (human)0.000008Sjogren syndrome57732417777324178Human
596949867GWAS1069386_HSjogren syndrome QTL GWAS1069386 (human)0.000008Sjogren syndrome57732417777324178Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1158886_H GCST004061 Sjögren's syndrome 585 European ancestry cases, up to 51 African ancestry cases, up to 164 Hispanic/Native american cases, up to 570 Asian ancestry cases, up to 59 cases, 1,546 European ancestry controls, 495 African ancestry controls, 237 Hispanic/Native American controls, 306 Asian ancestry controls, 148 controls. ? NR 0.000008 5.097 rs10474500 1.3333333 Sjogren syndrome (EFO:0000699)
 PMID:28076899
Database
Acc Id
Source(s)
GWAS Catalog GCST004061 GWAS Catalog

Note Type Note Reference