GWAS625927_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS625927_H (testosterone measurement QTL GWAS625927 (human)) Homo sapiens

Symbol: GWAS625927_H
Name: testosterone measurement QTL GWAS625927 (human)
RGD ID: 406976951
Trait: testosterone measurement
Measurement Type: serum testosterone level   (CMO:0000568)    
LOD Score: Not Available
P Value: 1.0E-25
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38577,192,788 - 77,192,789RGD_MAPPER_PIPELINEGRCh38
GRCh37576,488,613 - 76,488,614RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS625927_HHumanserum testosterone level  IAGPrs1119208405850206Based on the EFO term IDGWAS_CATALOGPMID:32042192

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS625927_HHumantestosterone measurement  IAGPrs1119208405850206 GWAS_CATALOGPMID:32042192
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1348334PDE8Bphosphodiesterase 8B57708671577428256Human

Position Markers

Peak: (rs1119208)
Human AssemblyChrPosition (strand)Source
GRCh38577,192,788 - 77,192,789RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597156967GWAS1253041_Htestosterone measurement QTL GWAS1253041 (human)7e-15testosterone measurementserum testosterone level (CMO:0000568)57719278877192789Human
597096823GWAS1192897_Htestosterone measurement QTL GWAS1192897 (human)1e-25testosterone measurementserum testosterone level (CMO:0000568)57719278877192789Human
597156854GWAS1252928_Htestosterone measurement QTL GWAS1252928 (human)6e-11testosterone measurementserum testosterone level (CMO:0000568)57719278877192789Human
596962230GWAS1081749_Htestosterone measurement QTL GWAS1081749 (human)7e-15testosterone measurementserum testosterone level (CMO:0000568)57719278877192789Human
596962416GWAS1081935_Htestosterone measurement QTL GWAS1081935 (human)6e-11testosterone measurementserum testosterone level (CMO:0000568)57719278877192789Human
406976951GWAS625927_Htestosterone measurement QTL GWAS625927 (human)1e-25testosterone measurementserum testosterone level (CMO:0000568)57719278877192789Human
406976904GWAS625880_Htestosterone measurement QTL GWAS625880 (human)1e-11testosterone measurementserum testosterone level (CMO:0000568)57719278877192789Human
597105645GWAS1201719_Htestosterone measurement QTL GWAS1201719 (human)1e-11testosterone measurementserum testosterone level (CMO:0000568)57719278877192789Human
406967373GWAS616349_Htestosterone measurement QTL GWAS616349 (human)6e-11testosterone measurementserum testosterone level (CMO:0000568)57719278877192789Human
406967820GWAS616796_Htestosterone measurement QTL GWAS616796 (human)7e-15testosterone measurementserum testosterone level (CMO:0000568)57719278877192789Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1192897_H GCST90012112 Total testosterone levels 230,454 European ancestry women C 0.648496 1E-25 25 rs1119208 0.0304668 testosterone measurement (EFO:0004908)
 PMID:32042192
GWAS1201719_H GCST90012102 Bioavailable testosterone levels 188,507 European ancestry women C 0.648622 1E-11 11 rs1119208 0.0174527 testosterone measurement (EFO:0004908)
 PMID:32042192
GWAS1252928_H GCST90104276 Testosterone levels in postmenopausal women 84,003 European ancestry individuals T 0.349643 6E-11 10.222 rs1119208 0.0335395 testosterone measurement (EFO:0004908)
 PMID:35192695
GWAS1253041_H GCST90104272 Testosterone levels 182,648 European ancestry individuals T 0.349643 7E-15 14.155 rs1119208 0.0270882 testosterone measurement (EFO:0004908)
 PMID:35192695
None Available GCST90104296 Testosterone levels 4,229 African ancestry individuals, 182,648 European ancestry individuals ? NR 7E-15 14.155 rs1119208 7.783 testosterone measurement (EFO:0004908)
 PMID:35192695
Database Acc Id Source(s)
GWAS Catalog GCST90012112 GWAS Catalog

RGD Curation Notes
Note Type Note Reference