GWAS1036624_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1036624_H (acute myeloid leukemia QTL GWAS1036624 (human)) Homo sapiens

Symbol: GWAS1036624_H
Name: acute myeloid leukemia QTL GWAS1036624 (human)
RGD ID: 407387648
Trait: acute myeloid leukemia
LOD Score: Not Available
P Value: 1.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38577,376,223 - 77,376,224RGD_MAPPER_PIPELINEGRCh38
GRCh37576,672,048 - 76,672,049RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1348334PDE8Bphosphodiesterase 8B57708671577428256Human

Position Markers

Peak: (rs11750661)
Human AssemblyChrPosition (strand)Source
GRCh38577,376,223 - 77,376,224RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407387647GWAS1036623_Hacute myeloid leukemia QTL GWAS1036623 (human)4e-15acute myeloid leukemia57737622377376224Human
407387648GWAS1036624_Hacute myeloid leukemia QTL GWAS1036624 (human)1e-10acute myeloid leukemia57737622377376224Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1036623_H GCST008413 Core binding factor acute myeloid leukemia 175 European ancestry cases, 218 European ancestry controls G 0.0 4E-15 14.398 rs11750661 N/A acute myeloid leukemia (EFO:0000222)
 PMID:27903959
GWAS1036624_H GCST008413 Core binding factor acute myeloid leukemia 175 European ancestry cases, 218 European ancestry controls G 0.178 1E-10 10 rs11750661 N/A acute myeloid leukemia (EFO:0000222)
 PMID:27903959
Database Acc Id Source(s)
GWAS Catalog GCST008413 GWAS Catalog

RGD Curation Notes
Note Type Note Reference