GWAS1269592_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1269592_H (smoking initiation QTL GWAS1269592 (human)) Homo sapiens

Symbol: GWAS1269592_H
Name: smoking initiation QTL GWAS1269592 (human)
RGD ID: 597173518
Trait: smoking initiation
LOD Score: Not Available
P Value: 1.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38577,418,555 - 77,418,556RGD_MAPPER_PIPELINEGRCh38
GRCh37576,714,380 - 76,714,381RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1269592_HHumansmoking initiation  IAGPrs2242159405850206 GWAS_CATALOGPMID:36477530

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1348334PDE8Bphosphodiesterase 8B57708671577428256Human


Peak: (rs2242159)
Human AssemblyChrPosition (strand)Source
GRCh38577,418,555 - 77,418,556RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
596963079GWAS1082598_Hsmoking initiation QTL GWAS1082598 (human)1e-10smoking initiation57741855577418556Human
406944516GWAS593492_Hsmoking initiation QTL GWAS593492 (human)1e-10smoking initiation57741855577418556Human
597173518GWAS1269592_Hsmoking initiation QTL GWAS1269592 (human)1e-10smoking initiation57741855577418556Human
597581606GWAS1638466_Htype 2 diabetes mellitus QTL GWAS1638466 (human)3e-11type 2 diabetes mellitus57741855577418556Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1269592_H GCST90243985 Smoking initiation 3,382,012 European ancestry, East Asian ancestry, Hispanic or Latin American, African ancestry individuals T 0.454 1E-10 10 rs2242159 0.00498 smoking initiation (EFO:0005670)
 PMID:36477530
GWAS1638466_H GCST90492734 Type 2 diabetes 50,251 African American cases, 103,909 African American controls, 88,109 East Asian ancestry cases, 339,395 East Asian ancestry controls, 242,283 European ancestry cases, 1,569,734 European ancestry controls, 29,375 Hispanic cases, 59,368 Hispanic controls, 1,602 South African ancestry cases, 976 South African ancestry controls, 16,832 South Asian ancestry cases, 33,767 South Asian ancestry controls C 0.52319 3E-11 10.523 rs2242159 N/A PMID:38374256
Database
Acc Id
Source(s)
GWAS Catalog GCST90243985 GWAS Catalog

Note Type Note Reference