GWAS591478_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS591478_H (type 2 diabetes mellitus QTL GWAS591478 (human)) Homo sapiens

Symbol: GWAS591478_H
Name: type 2 diabetes mellitus QTL GWAS591478 (human)
RGD ID: 406942502
Trait: type 2 diabetes mellitus
LOD Score: Not Available
P Value: 3.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38577,129,124 - 77,129,125RGD_MAPPER_PIPELINEGRCh38
GRCh37576,424,949 - 76,424,950RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
6770267ZBED3-AS1ZBED3 antisense RNA 157708671577149301Human
1348334PDE8Bphosphodiesterase 8B57708671577428256Human
151674313LOC124901008uncharacterized LOC12490100857712770877131128Human


Peak: (rs4457053)
Human AssemblyChrPosition (strand)Source
GRCh38577,129,124 - 77,129,125RGD_MAPPER_PIPELINE


1 to 10 of 11 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
406960609GWAS609585_Htype 2 diabetes mellitus QTL GWAS609585 (human)8e-18type 2 diabetes mellitus57712912477129125Human
596952388GWAS1071907_Htype 2 diabetes mellitus QTL GWAS1071907 (human)5e-10type 2 diabetes mellitus57712912477129125Human
597036372GWAS1132446_Htype 2 diabetes mellitus QTL GWAS1132446 (human)8e-18type 2 diabetes mellitus57712912477129125Human
597074820GWAS1170894_Htype 2 diabetes mellitus QTL GWAS1170894 (human)9e-11type 2 diabetes mellitus57712912477129125Human
406941637GWAS590613_Htype 2 diabetes mellitus QTL GWAS590613 (human)5e-10type 2 diabetes mellitus57712912477129125Human
406941636GWAS590612_Htype 2 diabetes mellitus QTL GWAS590612 (human)9e-11type 2 diabetes mellitus57712912477129125Human
597074355GWAS1170429_Htype 2 diabetes mellitus QTL GWAS1170429 (human)5e-10type 2 diabetes mellitus57712912477129125Human
596952626GWAS1072145_Htype 2 diabetes mellitus QTL GWAS1072145 (human)9e-11type 2 diabetes mellitus57712912477129125Human
406942502GWAS591478_Htype 2 diabetes mellitus QTL GWAS591478 (human)3e-12type 2 diabetes mellitus57712912477129125Human
596961267GWAS1080786_Htype 2 diabetes mellitus QTL GWAS1080786 (human)8e-18type 2 diabetes mellitus57712912477129125Human

1 to 10 of 11 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1132446_H GCST009379 Type 2 diabetes 74,124 European ancestry cases, 824,006 European ancestry controls G 0.3036 8E-18 17.097 rs4457053 1.06 PMID:30297969
GWAS1170429_H GCST004894 Type 2 diabetes 6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls A 0.67 5E-10 9.302 rs4457053 0.066 PMID:28869590
GWAS1170894_H GCST004894 Type 2 diabetes 6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls A 0.67 9E-11 10.046 rs4457053 0.0796 PMID:28869590
GWAS1081032_H GCST000712 Type 2 diabetes 8,130 European ancestry cases, 38,987 European ancestry controls G NR 3E-12 11.523 rs4457053 1.08 PMID:20581827
Database
Acc Id
Source(s)
GWAS Catalog GCST000712 GWAS Catalog

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