GWAS625867_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS625867_H (testosterone measurement QTL GWAS625867 (human)) Homo sapiens

Symbol: GWAS625867_H
Name: testosterone measurement QTL GWAS625867 (human)
RGD ID: 406976891
Trait: testosterone measurement
Measurement Type: serum testosterone level   (CMO:0000568)    
LOD Score: Not Available
P Value: 9.0E-18
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38577,165,881 - 77,165,882RGD_MAPPER_PIPELINEGRCh38
GRCh37576,461,706 - 76,461,707RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS625867_HHumanserum testosterone level  IAGPrs4431325405850206Based on the EFO term IDGWAS_CATALOGPMID:32042192

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS625867_HHumantestosterone measurement  IAGPrs4431325405850206 GWAS_CATALOGPMID:32042192
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1348334PDE8Bphosphodiesterase 8B57708671577428256Human

Position Markers

Peak: (rs4431325)
Human AssemblyChrPosition (strand)Source
GRCh38577,165,881 - 77,165,882RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406967813GWAS616789_Htestosterone measurement QTL GWAS616789 (human)4e-10testosterone measurementserum testosterone level (CMO:0000568)57716588177165882Human
406964471GWAS613447_Htestosterone measurement QTL GWAS613447 (human)1e-14testosterone measurementserum testosterone level (CMO:0000568)57716588177165882Human
406967369GWAS616345_Htestosterone measurement QTL GWAS616345 (human)0.000007testosterone measurementserum testosterone level (CMO:0000568)57716588177165882Human
406976891GWAS625867_Htestosterone measurement QTL GWAS625867 (human)9e-18testosterone measurementserum testosterone level (CMO:0000568)57716588177165882Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
None Available GCST90012112 Total testosterone levels 230,454 European ancestry women T 0.058979000000000004 9E-18 17.046 rs4431325 0.0496715 testosterone measurement (EFO:0004908)
 PMID:32042192
None Available GCST90012114 Total testosterone levels 425,097 European ancestry individuals T 0.05920499999999995 1E-14 14 rs4431325 0.0206225 testosterone measurement (EFO:0004908)
 PMID:32042192
None Available GCST90104296 Testosterone levels 4,229 African ancestry individuals, 182,648 European ancestry individuals ? NR 4E-10 9.398 rs4431325 6.237 testosterone measurement (EFO:0004908)
 PMID:35192695
None Available GCST90104272 Testosterone levels 182,648 European ancestry individuals T 0.0609325 4E-10 9.398 rs4431325 0.044017 testosterone measurement (EFO:0004908)
 PMID:35192695
None Available GCST90104276 Testosterone levels in postmenopausal women 84,003 European ancestry individuals T 0.0609325 0.000007 5.155 rs4431325 0.0468513 testosterone measurement (EFO:0004908)
 PMID:35192695
Database Acc Id Source(s)
GWAS Catalog GCST90012112 GWAS Catalog

RGD Curation Notes
Note Type Note Reference