GWAS1081448_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL: GWAS1081448_H (HbA1c measurement QTL GWAS1081448 (human)) Homo sapiens

Symbol: GWAS1081448_H
Name: HbA1c measurement QTL GWAS1081448 (human)
RGD ID: 596961929
Trait: HbA1c measurement
LOD Score: Not Available
P Value: 7.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38577,139,179 - 77,139,180RGD_MAPPER_PIPELINEGRCh38
GRCh37576,435,004 - 76,435,005RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
6770267ZBED3-AS1ZBED3 antisense RNA 157708671577149301Human
1348334PDE8Bphosphodiesterase 8B57708671577428256Human


Peak: (rs7732130)
Human AssemblyChrPosition (strand)Source
GRCh38577,139,179 - 77,139,180RGD_MAPPER_PIPELINE


1 to 10 of 26 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
406976899GWAS625875_Htype 2 diabetes mellitus QTL GWAS625875 (human)2e-32type 2 diabetes mellitus57713917977139180Human
597587868GWAS1644728_Hdiabetic neuropathy QTL GWAS1644728 (human)3e-12diabetic neuropathy57713917977139180Human
597584984GWAS1641844_Hdiabetes mellitus QTL GWAS1641844 (human)1e-14pancreas integrity trait (VT:0010560)57713917977139180Human
406987077GWAS636053_Htype 2 diabetes mellitus QTL GWAS636053 (human)6e-18type 2 diabetes mellitus57713917977139180Human
597577881GWAS1634741_HBMI-adjusted waist-hip ratio QTL GWAS1634741 (human)3e-08body size trait (VT:0100005)57713917977139180Human
597598742GWAS1655602_HHbA1c measurement QTL GWAS1655602 (human)3e-24HbA1c measurementblood hemoglobin A1c level (CMO:0002786)57713917977139180Human
597598868GWAS1655728_HHbA1c measurement QTL GWAS1655728 (human)2e-23HbA1c measurementblood hemoglobin A1c level (CMO:0002786)57713917977139180Human
597590608GWAS1647468_Hdiabetes mellitus QTL GWAS1647468 (human)2e-16pancreas integrity trait (VT:0010560)57713917977139180Human
597578065GWAS1634925_Htype 2 diabetes mellitus QTL GWAS1634925 (human)2e-32type 2 diabetes mellitus57713917977139180Human
597605265GWAS1662125_Htype 2 diabetes mellitus QTL GWAS1662125 (human)6e-18type 2 diabetes mellitus57713917977139180Human

1 to 10 of 26 rows


1 to 16 of 16 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1634741_H GCST90020025 Waist-to-hip ratio adjusted for BMI 219,872 British ancestry women G NR 3E-8 7.523 rs7732130 0.0168795 BMI-adjusted waist-hip ratio (EFO:0007788)
PMID:34021172
GWAS1634925_H GCST010557 Type 2 diabetes 148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls G 0.2954 2E-32 31.699 rs7732130 0.0554 PMID:32541925
GWAS1635019_H GCST90002244 Glycated hemoglobin levels 146,806 European ancestry individuals A 0.7109 7E-8 7.155 rs7732130 0.0083 HbA1c measurement (EFO:0004541)
PMID:34059833
GWAS1635146_H GCST90444202 Type 2 diabetes 51,256 African, African American, East Asian, South Asian, European, Middle Eastern, admixed American, other or other admixed ancestry cases, 370,487 African, African American, East Asian, South Asian, European, Middle Eastern, admixed American, other or other admixed ancestry controls G 0.31164 4E-23 22.398 rs7732130 0.084 PMID:39379762
GWAS1637992_H GCST90492734 Type 2 diabetes 50,251 African American cases, 103,909 African American controls, 88,109 East Asian ancestry cases, 339,395 East Asian ancestry controls, 242,283 European ancestry cases, 1,569,734 European ancestry controls, 29,375 Hispanic cases, 59,368 Hispanic controls, 1,602 South African ancestry cases, 976 South African ancestry controls, 16,832 South Asian ancestry cases, 33,767 South Asian ancestry controls G 0.21671 7E-55 54.155 rs7732130 N/A PMID:38374256
GWAS1641844_H GCST90479589 Diabetes / "Sugar" 16,718 African American or Afro-Caribbean cases, 38,787 African American or Afro-Caribbean controls, 8,910 Hispanic or Latin American cases, 20,404 Hispanic or Latin American controls, 1,007 East Asian ancestry cases, 2,540 East Asian ancestry controls, 80,160 European ancestry cases, 235,508 European ancestry controls G 0.2861 1E-14 14 rs7732130 0.05458 diabetes mellitus (EFO:0000400)
PMID:39024449
GWAS1644728_H GCST90475676 Type 2 diabetes with neurological manifestations (PheCode 250.24) 59,205 European ancestry cases, 375,439 European ancestry controls G 0.3201 3E-12 11.523 rs7732130 0.04281 diabetic neuropathy (EFO:1000783)
PMID:39024449
GWAS1645085_H GCST90479625 Glucose (fasting status unknown, maximum, inv-norm transformed) 117,850 African American or Afro-Caribbean individuals, 57,272 Hispanic or Latin American individuals, 6,318 East Asian ancestry individuals, 419,671 European ancestry individuals G 0.2724 2E-25 24.699 rs7732130 0.03347 glucose measurement (EFO:0004468)
PMID:39024449
GWAS1645663_H GCST90479626 Glucose (fasting status unknown, mean, inv-norm transformed) 118,233 African American or Afro-Caribbean individuals, 57,284 Hispanic or Latin American individuals, 6,317 East Asian ancestry individuals, 419,946 European ancestry individuals G 0.2723 3E-36 35.523 rs7732130 0.04207 glucose measurement (EFO:0004468)
PMID:39024449
GWAS1646923_H GCST90479885 Type 2 diabetes (PheCode 250.2) 51,551 African American or Afro-Caribbean cases, 64,463 African American or Afro-Caribbean controls, 22,274 Hispanic or Latin American cases, 35,406 Hispanic or Latin American controls, 2,272 East Asian ancestry cases, 4,333 East Asian ancestry controls, 154,194 European ancestry cases, 278,454 European ancestry controls G 0.2741 1E-16 16 rs7732130 0.04849 PMID:39024449
GWAS1647468_H GCST90479892 Diabetes mellitus (PheCode 250) 51,802 African American or Afro-Caribbean cases, 63,903 African American or Afro-Caribbean controls, 22,361 Hispanic or Latin American cases, 35,203 Hispanic or Latin American controls, 2,276 East Asian ancestry cases, 4,318 East Asian ancestry controls, 154,958 European ancestry cases, 276,347 European ancestry controls G 0.274 2E-16 15.699 rs7732130 0.04775 diabetes mellitus (EFO:0000400)
PMID:39024449
GWAS1655602_H GCST90479502 Hemoglobin A1c (HbA1c, minimum, inv-norm transformed) 98,578 African American or Afro-Caribbean individuals, 49,152 Hispanic or Latin American individuals, 5,466 East Asian ancestry individuals, 338,640 European ancestry individuals G 0.2725 3E-24 23.523 rs7732130 0.03738 HbA1c measurement (EFO:0004541)
PMID:39024449
GWAS1655728_H GCST90479501 Hemoglobin A1c (HbA1c, mean, inv-norm transformed) 98,735 African American or Afro-Caribbean individuals, 49,225 Hispanic or Latin American individuals, 5,475 East Asian ancestry individuals, 338,848 European ancestry individuals G 0.2724 2E-23 22.699 rs7732130 0.03789 HbA1c measurement (EFO:0004541)
PMID:39024449
GWAS1655774_H GCST90479500 Hemoglobin A1c (HbA1c, maximum, inv-norm transformed) 98,772 African American or Afro-Caribbean individuals, 49,229 Hispanic or Latin American individuals, 5,477 East Asian ancestry individuals, 338,857 European ancestry individuals G 0.2724 9E-22 21.046 rs7732130 0.0354 HbA1c measurement (EFO:0004541)
PMID:39024449
GWAS1662123_H GCST90132183 Type 2 diabetes 251,740 European ancestry individuals, 139,705 East Asian ancestry individuals, 40,737 South Asian ancestry individuals, 27,417 Hispanic individuals, 30,167 African American individuals, 2,426 Zulu ancestry individuals G NR 3E-20 19.523 rs7732130 1.06 PMID:35551307
GWAS1662125_H GCST90132184 Type 2 diabetes 251,740 European ancestry individuals G 0.301 6E-18 17.222 rs7732130 0.061 PMID:35551307
1 to 16 of 16 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90002244 GWAS Catalog

Note Type Note Reference