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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:abnormal tracheal cartilage morphology
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Accession:MP:0003120 term browser browse the term
Definition:any structural anomaly of the cartilaginous structures that support the trachea and prevent it from collapsing


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abnormal tracheal cartilage morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan IAGP MGI PMID:632744 NCBI chr 7:78,702,974...78,764,847
Ensembl chr 7:78,703,231...78,764,847 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 IAGP MGI PMID:12563036 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525 		JBrowse link
G Ano1 anoctamin 1, calcium activated chloride channel IAGP MGI PMID:18585372 PMID:24401273 NCBI chr 7:144,142,286...144,305,762
Ensembl chr 7:144,142,286...144,305,711 		JBrowse link
G Arsb arylsulfatase B IAGP MGI PMID:8710849 NCBI chr13:93,908,187...94,079,524
Ensembl chr13:93,908,138...94,079,524 		JBrowse link
G Bmper BMP-binding endothelial regulator IAGP MGI PMID:17035289 NCBI chr 9:23,134,372...23,396,511
Ensembl chr 9:23,134,372...23,396,496 		JBrowse link
G Cacna1h calcium channel, voltage-dependent, T type, alpha 1H subunit IAGP MGI PMID:24778262 NCBI chr17:25,593,259...25,655,308
Ensembl chr17:25,593,259...25,652,759 		JBrowse link
G Col11a1 collagen, type XI, alpha 1 IAGP MGI PMID:4100752 NCBI chr 3:113,823,933...114,014,405
Ensembl chr 3:113,824,189...114,014,367 		JBrowse link
G E2f1 E2F transcription factor 1 IAGP MGI PMID:35593225 NCBI chr 2:154,401,320...154,411,812
Ensembl chr 2:154,401,327...154,411,812 		JBrowse link
G Edil3 EGF-like repeats and discoidin I-like domains 3 IAGP MGI PMID:18367557 NCBI chr13:88,969,591...89,471,344
Ensembl chr13:88,969,591...89,471,342 		JBrowse link
G Efnb1 ephrin B1 IAGP MGI PMID:17223098 NCBI chr  X:98,179,667...98,192,628
Ensembl chr  X:98,179,736...98,192,597 		JBrowse link
G Efnb2 ephrin B2 IAGP MGI PMID:17223098 NCBI chr 8:8,667,235...8,711,242
Ensembl chr 8:8,667,434...8,711,242 		JBrowse link
G Fbn1 fibrillin 1 IAGP MGI PMID:176891 NCBI chr 2:125,142,514...125,348,417
Ensembl chr 2:125,142,514...125,349,913 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 IAGP MGI PMID:15975938 PMID:17132737 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079 		JBrowse link
G Foxc1 forkhead box C1 IEA MGI NCBI chr13:31,990,629...31,994,618
Ensembl chr13:31,990,616...31,996,459 		JBrowse link
G Fstl1 follistatin-like 1 IAGP MGI PMID:21482757 PMID:21826198 NCBI chr16:37,597,417...37,656,878
Ensembl chr16:37,597,235...37,656,876 		JBrowse link
G Gli2 GLI-Kruppel family member GLI2 IAGP MGI PMID:9731531 NCBI chr 1:118,761,791...118,987,578
Ensembl chr 1:118,761,862...118,981,349 		JBrowse link
G Gli3 GLI-Kruppel family member GLI3 IAGP MGI PMID:9731531 NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611 		JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:34184034 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
G Hif1a hypoxia inducible factor 1, alpha subunit IAGP MGI PMID:11691837 NCBI chr12:73,948,186...73,994,304
Ensembl chr12:73,948,149...73,994,304 		JBrowse link
G Hoxa5 homeobox A5 IAGP MGI PMID:9441679 PMID:17417799 NCBI chr 6:52,178,768...52,181,437
Ensembl chr 6:52,178,734...52,181,567 		JBrowse link
G Idh1 isocitrate dehydrogenase 1 (NADP+), soluble IAGP MGI PMID:25730874 NCBI chr 1:65,197,775...65,225,638
Ensembl chr 1:65,197,775...65,225,659 		JBrowse link
G Kl klotho IEA MGI NCBI chr 5:150,876,072...150,917,282
Ensembl chr 5:150,876,072...150,917,282 		JBrowse link
G Mgp matrix Gla protein IAGP MGI PMID:9052783 NCBI chr 6:136,849,433...136,852,821
Ensembl chr 6:136,849,433...136,852,821 		JBrowse link
G n-TUtca2 nuclear encoded tRNA selenocysteine 2 (anticodon TCA) IAGP MGI PMID:19696890 NCBI chr 7:19,035,169...19,035,255 JBrowse link
G Nkx2-1 NK2 homeobox 1 IAGP MGI PMID:10208743 NCBI chr12:56,578,741...56,583,570
Ensembl chr12:56,578,743...56,583,693 		JBrowse link
G Notum notum palmitoleoyl-protein carboxylesterase IAGP MGI PMID:29428562 NCBI chr11:120,544,614...120,552,019
Ensembl chr11:120,544,614...120,552,001 		JBrowse link
G Rara retinoic acid receptor, alpha IAGP MGI PMID:7607068 PMID:9240560 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768 		JBrowse link
G Rarb retinoic acid receptor, beta IAGP MGI PMID:7607068 PMID:9240560 NCBI chr14:5,387,365...6,038,924
Ensembl chr14:5,650,540...6,038,924 		JBrowse link
G Rarg retinoic acid receptor, gamma IAGP MGI PMID:7607068 PMID:9240560 NCBI chr15:102,143,373...102,165,891
Ensembl chr15:102,143,373...102,165,952 		JBrowse link
G Rbl1 RB transcriptional corepressor like 1 IAGP MGI PMID:8682294 NCBI chr 2:156,987,813...157,046,454
Ensembl chr 2:156,987,813...157,046,454 		JBrowse link
G Rbl2 RB transcriptional corepressor like 2 IAGP MGI PMID:8682294 NCBI chr 8:91,796,685...91,850,472
Ensembl chr 8:91,796,685...91,850,472 		JBrowse link
G Rspo2 R-spondin 2 IAGP MGI PMID:19233133 NCBI chr15:42,884,184...43,034,990
Ensembl chr15:42,884,190...43,034,222 		JBrowse link
G Shh sonic hedgehog IAGP MGI PMID:9768363 PMID:15305287 PMID:26329601 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
G Snrpb small nuclear ribonucleoprotein B IAGP MGI PMID:35593225 NCBI chr 2:130,013,560...130,031,184
Ensembl chr 2:130,013,555...130,021,323 		JBrowse link
G Sox9 SRY (sex determining region Y)-box 9 IAGP MGI PMID:11371614 NCBI chr11:112,673,036...112,678,583
Ensembl chr11:112,673,050...112,678,586 		JBrowse link
G Srsf3 serine and arginine-rich splicing factor 3 IAGP MGI PMID:34184034 NCBI chr17:29,251,634...29,262,346
Ensembl chr17:29,251,602...29,262,347 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor II IAGP MGI PMID:18990706 NCBI chr 9:115,916,763...116,004,431
Ensembl chr 9:115,913,361...116,004,428 		JBrowse link
G Traf4 TNF receptor associated factor 4 IAGP MGI PMID:10934170 PMID:11943846 NCBI chr11:78,049,249...78,056,405
Ensembl chr11:78,049,325...78,056,415 		JBrowse link
G Twist2 twist basic helix-loop-helix transcription factor 2 IAGP MGI PMID:18990706 NCBI chr 1:91,729,183...91,775,756
Ensembl chr 1:91,729,183...91,775,750 		JBrowse link
G Wnt7b wingless-type MMTV integration site family, member 7B IAGP MGI PMID:18367557 NCBI chr15:85,419,638...85,466,022
Ensembl chr15:85,419,638...85,466,674 		JBrowse link
G Yy1 YY1 transcription factor IAGP MGI PMID:26329601 NCBI chr12:108,758,841...108,786,074
Ensembl chr12:108,758,899...108,786,074 		JBrowse link
G Zfhx4 zinc finger homeodomain 4 IAGP MGI PMID:34732852 NCBI chr 3:5,276,268...5,480,921
Ensembl chr 3:5,283,586...5,480,917 		JBrowse link
absent tracheal cartilage rings term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmper BMP-binding endothelial regulator IAGP MGI PMID:17035289 PMID:18789316 NCBI chr 9:23,134,372...23,396,511
Ensembl chr 9:23,134,372...23,396,496 		JBrowse link
G Rara retinoic acid receptor, alpha IAGP MGI PMID:7607068 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768 		JBrowse link
G Rarg retinoic acid receptor, gamma IAGP MGI PMID:7607068 NCBI chr15:102,143,373...102,165,891
Ensembl chr15:102,143,373...102,165,952 		JBrowse link
G Shh sonic hedgehog IAGP MGI PMID:15305287 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
G Trps1 transcriptional repressor GATA binding 1 IAGP MGI PMID:17997399 NCBI chr15:50,518,149...50,754,027
Ensembl chr15:50,518,148...50,753,859 		JBrowse link
cricoid and tracheal cartilage fusion term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa5 homeobox A5 IAGP MGI PMID:9441679 PMID:17417799 NCBI chr 6:52,178,768...52,181,437
Ensembl chr 6:52,178,734...52,181,567 		JBrowse link
G Rara retinoic acid receptor, alpha IAGP MGI PMID:7607068 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768 		JBrowse link
G Rarb retinoic acid receptor, beta IAGP MGI PMID:7607068 PMID:9240560 NCBI chr14:5,387,365...6,038,924
Ensembl chr14:5,650,540...6,038,924 		JBrowse link
G Rarg retinoic acid receptor, gamma IAGP MGI PMID:7607068 PMID:9240560 NCBI chr15:102,143,373...102,165,891
Ensembl chr15:102,143,373...102,165,952 		JBrowse link
decreased tracheal cartilage ring number term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 IAGP MGI PMID:12563036 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525 		JBrowse link
G Fstl1 follistatin-like 1 IAGP MGI PMID:21482757 NCBI chr16:37,597,417...37,656,878
Ensembl chr16:37,597,235...37,656,876 		JBrowse link
G Hoxa5 homeobox A5 IAGP MGI PMID:9441679 NCBI chr 6:52,178,768...52,181,437
Ensembl chr 6:52,178,734...52,181,567 		JBrowse link
G Nkx2-1 NK2 homeobox 1 IAGP MGI PMID:10208743 NCBI chr12:56,578,741...56,583,570
Ensembl chr12:56,578,743...56,583,693 		JBrowse link
G Notum notum palmitoleoyl-protein carboxylesterase IAGP MGI PMID:29428562 NCBI chr11:120,544,614...120,552,019
Ensembl chr11:120,544,614...120,552,001 		JBrowse link
G Shh sonic hedgehog IAGP MGI PMID:15305287 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor II IAGP MGI PMID:18990706 NCBI chr 9:115,916,763...116,004,431
Ensembl chr 9:115,913,361...116,004,428 		JBrowse link
G Twist2 twist basic helix-loop-helix transcription factor 2 IAGP MGI PMID:18990706 NCBI chr 1:91,729,183...91,775,756
Ensembl chr 1:91,729,183...91,775,750 		JBrowse link
G Wnt5a wingless-type MMTV integration site family, member 5A IAGP MGI PMID:12142021 NCBI chr14:28,224,962...28,249,405
Ensembl chr14:28,226,707...28,249,405 		JBrowse link
fused tracheal cartilage rings term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr2 fibroblast growth factor receptor 2 IAGP MGI PMID:15316116 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079 		JBrowse link
G Pax9 paired box 9 IAGP MGI PMID:34615475 NCBI chr12:56,738,478...56,759,609
Ensembl chr12:56,738,552...56,759,607 		JBrowse link
G Rarg retinoic acid receptor, gamma IAGP MGI PMID:7631783 PMID:8388780 PMID:9376317 NCBI chr15:102,143,373...102,165,891
Ensembl chr15:102,143,373...102,165,952 		JBrowse link
G Traf4 TNF receptor associated factor 4 IAGP MGI PMID:11943846 NCBI chr11:78,049,249...78,056,405
Ensembl chr11:78,049,325...78,056,415 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 16762
    respiratory system phenotype 1843
      abnormal respiratory system morphology 1272
        abnormal trachea morphology 107
          abnormal tracheal cartilage morphology 45
            cricoid and tracheal cartilage fusion 4
            decreased tracheal cartilage ring number + 13
            fused tracheal cartilage rings 4
paths to the root