Zfhx4 (zinc finger homeodomain 4) - Rat Genome Database

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Gene: Zfhx4 (zinc finger homeodomain 4) Mus musculus
Analyze
Symbol: Zfhx4
Name: zinc finger homeodomain 4
RGD ID: 1557549
MGI Page MGI
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Located in nucleus. Is expressed in several structures, including genitourinary system; hemolymphoid system gland; nervous system; retina; and skin. Orthologous to human ZFHX4 (zinc finger homeobox 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A930021B15; C130041O22Rik; Zfh-4; Zfh4; zinc finger homeobox protein 4; zinc finger homeodomain protein 4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3935,276,268 - 5,480,921 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl35,283,586 - 5,480,917 (+)EnsemblGRCm39 Ensembl
GRCm3835,218,218 - 5,415,861 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl35,218,526 - 5,415,857 (+)EnsemblGRCm38mm10GRCm38
MGSCv3735,218,554 - 5,415,855 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3635,224,745 - 5,397,584 (+)NCBIMGSCv36mm8
Celera35,302,820 - 5,500,317 (+)NCBICelera
Cytogenetic Map3A1NCBI
cM Map31.96NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
6-propyl-2-thiouracil  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
casticin  (EXP)
CGP 52608  (ISO)
chloroprene  (ISO)
cisplatin  (ISO)
clobetasol  (EXP)
crotonaldehyde  (ISO)
Cuprizon  (ISO)
cytarabine  (ISO)
dexamethasone  (ISO)
dichloromethane  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
epoxiconazole  (EXP)
folic acid  (EXP,ISO)
FR900359  (ISO)
fulvestrant  (ISO)
geldanamycin  (ISO)
indole-3-methanol  (ISO)
indometacin  (ISO)
ketamine  (ISO)
melphalan  (ISO)
mercury atom  (EXP)
mercury(0)  (EXP)
methotrexate  (ISO)
methylmercury chloride  (ISO)
N-acetyl-L-cysteine  (ISO)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
oxaliplatin  (ISO)
paracetamol  (ISO)
PCB138  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (EXP)
potassium chromate  (ISO)
propiconazole  (EXP)
SB 431542  (ISO)
silicon dioxide  (EXP)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenite  (EXP)
Soman  (ISO)
succimer  (EXP)
sunitinib  (ISO)
temozolomide  (ISO)
tetrachloromethane  (EXP)
topotecan  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
triptonide  (EXP)
troglitazone  (EXP)
urethane  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA,IDA)

References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:7537552   PMID:8889548   PMID:10349636   PMID:10873665   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11812828   PMID:12477932   PMID:15226823   PMID:16096065   PMID:16141072  
PMID:16141073   PMID:16602821   PMID:16919269   PMID:16946494   PMID:18287559   PMID:18367606   PMID:20932939   PMID:21267068   PMID:21873635   PMID:22174793   PMID:23300874   PMID:24440720  
PMID:24952961   PMID:27163549   PMID:27655933   PMID:29031500   PMID:32098917   PMID:32325033   PMID:33475140   PMID:34321999   PMID:34732852   PMID:35177643   PMID:36596814   PMID:37298722  
PMID:38355793  


Genomics

Comparative Map Data
Zfhx4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3935,276,268 - 5,480,921 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl35,283,586 - 5,480,917 (+)EnsemblGRCm39 Ensembl
GRCm3835,218,218 - 5,415,861 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl35,218,526 - 5,415,857 (+)EnsemblGRCm38mm10GRCm38
MGSCv3735,218,554 - 5,415,855 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3635,224,745 - 5,397,584 (+)NCBIMGSCv36mm8
Celera35,302,820 - 5,500,317 (+)NCBICelera
Cytogenetic Map3A1NCBI
cM Map31.96NCBI
ZFHX4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38876,681,247 - 76,867,281 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl876,681,239 - 76,867,281 (+)EnsemblGRCh38hg38GRCh38
GRCh37877,593,482 - 77,779,517 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36877,756,070 - 77,942,076 (+)NCBINCBI36Build 36hg18NCBI36
Build 34877,778,834 - 77,940,711NCBI
Celera873,586,882 - 73,772,899 (+)NCBICelera
Cytogenetic Map8q21.13NCBI
HuRef873,079,827 - 73,265,620 (+)NCBIHuRef
CHM1_1877,645,108 - 77,831,116 (+)NCBICHM1_1
T2T-CHM13v2.0877,110,392 - 77,296,418 (+)NCBIT2T-CHM13v2.0
Zfhx4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8298,131,996 - 98,321,070 (-)NCBIGRCr8
mRatBN7.2296,224,763 - 96,408,245 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl296,224,767 - 96,408,228 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2102,769,126 - 102,952,321 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02100,890,220 - 101,073,413 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0295,941,374 - 96,124,613 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0298,423,565 - 98,610,368 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl298,423,569 - 98,610,368 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02118,157,856 - 118,345,227 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4298,549,509 - 98,734,901 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera291,739,962 - 91,923,160 (-)NCBICelera
Cytogenetic Map2q23NCBI
Zfhx4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554443,938,830 - 4,116,076 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554443,938,830 - 4,116,076 (-)NCBIChiLan1.0ChiLan1.0
ZFHX4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2792,415,091 - 92,601,929 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1868,043,186 - 68,229,782 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0873,206,659 - 73,392,531 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1874,844,366 - 75,030,190 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl874,844,374 - 75,030,190 (+)Ensemblpanpan1.1panPan2
ZFHX4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12924,689,152 - 24,849,048 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2924,667,180 - 24,846,270 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2924,929,902 - 25,111,936 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02924,779,377 - 24,961,780 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2924,781,333 - 24,959,003 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12924,878,361 - 25,037,052 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02924,895,008 - 25,053,849 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02925,247,073 - 25,406,115 (+)NCBIUU_Cfam_GSD_1.0
Zfhx4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530354,302,796 - 54,487,818 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367021,694,685 - 1,872,942 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZFHX4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl459,387,007 - 59,575,073 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1459,384,202 - 59,580,913 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2464,861,519 - 65,053,217 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZFHX4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1872,206,263 - 72,396,852 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl872,208,282 - 72,396,818 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603968,883,502 - 69,071,916 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zfhx4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474414,400,990 - 14,597,276 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474414,401,079 - 14,597,220 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zfhx4
6045 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1541
Count of miRNA genes:625
Interacting mature miRNAs:742
Transcripts:ENSMUST00000026284, ENSMUST00000175641, ENSMUST00000175866, ENSMUST00000176175, ENSMUST00000176383, ENSMUST00000177488
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301256Skmw1_mskeletal muscle weight 1 (mouse)Not determined3125786432Mouse
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
1300559Thypr3_mthymocyte proliferative response 3 (mouse)Not determined3452541938525519Mouse

Markers in Region
19.MMHAP53FLG1.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3835,238,570 - 5,238,747UniSTSGRCm38
MGSCv3735,238,570 - 5,238,747UniSTSGRCm37
Celera35,322,812 - 5,322,989UniSTS
Cytogenetic Map3A1UniSTS
Whitehead_YAC3 UniSTS
D3Mit150  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3835,347,040 - 5,347,155UniSTSGRCm38
MGSCv3735,347,040 - 5,347,155UniSTSGRCm37
Celera35,431,338 - 5,431,453UniSTS
Cytogenetic Map3A1UniSTS
cM Map32.4UniSTS
Whitehead Genetic32.2UniSTS
Whitehead_YAC3 UniSTS
AI007855  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3835,412,256 - 5,412,426UniSTSGRCm38
MGSCv3735,412,256 - 5,412,426UniSTSGRCm37
Celera35,496,719 - 5,496,889UniSTS
Cytogenetic Map3A1UniSTS
C130041O22Rik  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3835,412,778 - 5,413,168UniSTSGRCm38
MGSCv3735,412,778 - 5,413,168UniSTSGRCm37
Celera35,497,241 - 5,497,631UniSTS
Cytogenetic Map3A1UniSTS
cM Map3 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001368671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_030708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB024499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC115031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC118246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK086581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC061199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI988177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L36173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000026284   ⟹   ENSMUSP00000026284
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl35,283,614 - 5,480,915 (+)Ensembl
GRCm38.p6 Ensembl35,218,554 - 5,415,855 (+)Ensembl
RefSeq Acc Id: ENSMUST00000175641
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl35,283,606 - 5,396,306 (+)Ensembl
GRCm38.p6 Ensembl35,218,546 - 5,331,246 (+)Ensembl
RefSeq Acc Id: ENSMUST00000175866   ⟹   ENSMUSP00000135827
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl35,283,586 - 5,478,225 (+)Ensembl
GRCm38.p6 Ensembl35,218,526 - 5,413,165 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176175   ⟹   ENSMUSP00000139253
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl35,286,565 - 5,307,078 (+)Ensembl
GRCm38.p6 Ensembl35,221,505 - 5,242,018 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176383   ⟹   ENSMUSP00000135289
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl35,306,732 - 5,480,917 (+)Ensembl
GRCm38.p6 Ensembl35,241,672 - 5,415,857 (+)Ensembl
RefSeq Acc Id: NM_001368671   ⟹   NP_001355600
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3935,286,256 - 5,480,915 (+)NCBI
GRCm3835,221,196 - 5,415,855 (+)NCBI
Sequence:
RefSeq Acc Id: NM_030708   ⟹   NP_109633
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3935,283,614 - 5,480,915 (+)NCBI
GRCm3835,218,554 - 5,415,855 (+)NCBI
MGSCv3735,218,554 - 5,415,855 (+)RGD
Celera35,302,820 - 5,500,317 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006530105   ⟹   XP_006530168
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3935,282,509 - 5,480,921 (+)NCBI
GRCm3835,218,218 - 5,415,861 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530106   ⟹   XP_006530169
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3935,286,299 - 5,480,921 (+)NCBI
GRCm3835,221,195 - 5,415,861 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017319816   ⟹   XP_017175305
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3935,302,860 - 5,480,921 (+)NCBI
GRCm3835,237,795 - 5,415,861 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163423   ⟹   XP_036019316
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3935,276,268 - 5,480,921 (+)NCBI
Sequence:
RefSeq Acc Id: NP_109633   ⟸   NM_030708
- Peptide Label: isoform 2
- UniProtKB: E9Q5A7 (UniProtKB/TrEMBL),   H3BLK8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006530168   ⟸   XM_006530105
- Peptide Label: isoform X1
- UniProtKB: H3BLK8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006530169   ⟸   XM_006530106
- Peptide Label: isoform X2
- UniProtKB: E9Q5A7 (UniProtKB/TrEMBL),   H3BLK8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017175305   ⟸   XM_017319816
- Peptide Label: isoform X1
- UniProtKB: H3BLK8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001355600   ⟸   NM_001368671
- Peptide Label: isoform 1
- UniProtKB: H3BLK8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000026284   ⟸   ENSMUST00000026284
RefSeq Acc Id: ENSMUSP00000135289   ⟸   ENSMUST00000176383
RefSeq Acc Id: ENSMUSP00000139253   ⟸   ENSMUST00000176175
RefSeq Acc Id: ENSMUSP00000135827   ⟸   ENSMUST00000175866
RefSeq Acc Id: XP_036019316   ⟸   XM_036163423
- Peptide Label: isoform X1
- UniProtKB: H3BLK8 (UniProtKB/TrEMBL)
Protein Domains
C2H2-type   Homeobox

Promoters
RGD ID:6834639
Promoter ID:MM_KWN:33696
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   Brain,   Liver,   MEF_B4,   MEF_B6
Transcripts:NM_030708
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3635,218,381 - 5,219,027 (+)MPROMDB
RGD ID:6880182
Promoter ID:EPDNEW_M3542
Type:initiation region
Name:Zfhx4_1
Description:Mus musculus zinc finger homeodomain 4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M3544  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3835,218,579 - 5,218,639EPDNEW
RGD ID:6880186
Promoter ID:EPDNEW_M3544
Type:initiation region
Name:Zfhx4_2
Description:Mus musculus zinc finger homeodomain 4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M3542  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3835,221,055 - 5,221,115EPDNEW
RGD ID:6834640
Promoter ID:MM_KWN:33698
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:ENSMUST00000081955
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3635,242,266 - 5,243,717 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2137668 AgrOrtholog
Ensembl Genes ENSMUSG00000025255 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000026284 ENTREZGENE
  ENSMUST00000026284.13 UniProtKB/TrEMBL
  ENSMUST00000175866 ENTREZGENE
  ENSMUST00000175866.8 UniProtKB/TrEMBL
  ENSMUST00000176175.2 UniProtKB/TrEMBL
  ENSMUST00000176383.3 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Matrin/U1-like-C_Znf_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2137668 ENTREZGENE
NCBI Gene 80892 ENTREZGENE
PANTHER ZINC FINGER HOMEOBOX PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC FINGER HOMEOBOX PROTEIN 4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Homeodomain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Zfhx4 PhenoGen
PROSITE HOMEOBOX_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_U1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt E9Q5A7 ENTREZGENE, UniProtKB/TrEMBL
  H3BLK8 ENTREZGENE, UniProtKB/TrEMBL
  Q6P8L4_MOUSE UniProtKB/TrEMBL
  Q8C4P4_MOUSE UniProtKB/TrEMBL
  Q8C8T0_MOUSE UniProtKB/TrEMBL
  Q9JJN2 ENTREZGENE
  V9GXP5_MOUSE UniProtKB/TrEMBL
  ZFHX4_MOUSE UniProtKB/Swiss-Prot